Wall clock time and date at job start Tue Mar 31 2020 20:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 N 1.65595 * 107.21978 * 90.00190 * 14 12 2 18 18 C 1.46497 * 120.00400 * 64.99328 * 17 14 12 19 19 C 1.50697 * 109.47604 * 165.00270 * 18 17 14 20 20 C 1.33407 * 122.54582 * 260.02902 * 19 18 17 21 21 S 1.75878 * 109.60747 * 179.97438 * 20 19 18 22 22 C 1.75882 * 90.98242 * 0.02562 * 21 20 19 23 23 C 1.33438 * 109.59783 * 359.73371 * 22 21 20 24 24 Cl 1.73601 * 122.55075 * 180.24252 * 23 22 21 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 30 30 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 31 31 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 32 32 H 0.96999 * 120.00264 * 245.00142 * 17 14 12 33 33 H 1.09000 * 109.47562 * 285.00952 * 18 17 14 34 34 H 1.09004 * 109.46835 * 45.00073 * 18 17 14 35 35 H 1.08001 * 125.18981 * 0.03336 * 20 19 18 36 36 H 1.08000 * 125.19741 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8091 3.3998 18 6 1.1508 -0.0351 4.2817 19 6 0.6166 0.7950 5.4204 20 6 1.1735 0.7933 6.6327 21 16 0.2822 1.8771 7.6931 22 6 -0.8302 2.2834 6.3928 23 6 -0.4864 1.6215 5.2863 24 17 -1.3587 1.7801 3.7938 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 2.4157 -2.7377 0.9718 30 1 1.6237 -2.2852 2.5003 31 1 0.6904 -2.3002 0.9847 32 1 1.9053 1.7751 3.4682 33 1 0.3187 -0.4566 3.7177 34 1 1.7668 -0.8422 4.6782 35 1 2.0399 0.2155 6.9188 36 1 -1.6620 2.9673 6.4760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885488249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:09 Heat of formation + Delta-G solvation = -35.164014 kcal Electronic energy + Delta-G solvation = -23479.215703 eV Core-core repulsion = 19857.613706 eV Total energy + Delta-G solvation = -3621.601997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.09101 -36.79818 -36.46704 -36.38008 -35.33105 -34.51543 -32.48693 -30.12563 -30.02725 -26.49626 -25.79165 -24.98928 -23.35918 -20.94349 -19.47846 -18.87319 -18.29076 -17.41963 -17.12158 -16.59548 -16.11778 -15.60285 -15.14263 -14.46401 -14.36791 -14.00794 -13.65818 -13.48852 -13.33631 -12.95658 -12.80844 -12.71750 -12.29238 -12.17329 -11.92999 -11.85190 -11.62009 -11.58991 -11.48539 -11.24457 -11.17340 -11.08088 -11.04006 -10.46971 -10.14409 -9.62874 -9.42890 -9.38985 -9.22282 -8.74777 -8.62304 -8.11461 -6.11401 -4.11634 0.44695 0.94812 1.06133 1.35847 2.04530 2.32497 3.23007 3.35508 3.37179 3.43929 4.02795 4.34138 4.35919 4.55039 4.88729 4.98114 5.07100 5.18491 5.26962 5.36231 5.46852 5.70613 5.81197 5.92451 6.01818 6.20025 6.25961 6.34155 6.50391 6.57738 6.81690 7.01665 7.30710 7.42123 7.64792 8.48380 8.93169 9.48723 11.01629 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.004116 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.906659 B = 6801.303728 C = 7771.472805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.241 3.759 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.881 3.119 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.294 1.294 12 N -0.983 5.983 13 C 0.108 3.892 14 S 2.782 3.218 15 O -0.989 6.989 16 O -0.972 6.972 17 N -1.128 6.128 18 C 0.181 3.819 19 C -0.108 4.108 20 C -0.184 4.184 21 S 0.142 5.858 22 C -0.214 4.214 23 C -0.038 4.038 24 Cl -0.036 7.036 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.178 0.822 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 4.345 22.977 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.825 5.825 13 C -0.039 4.039 14 S 2.790 3.210 15 O -0.973 6.973 16 O -0.956 6.956 17 N -0.887 5.887 18 C 0.052 3.948 19 C -0.122 4.122 20 C -0.321 4.321 21 S 0.406 5.594 22 C -0.350 4.350 23 C -0.077 4.077 24 Cl -0.007 7.007 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.195 0.805 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.910 4.628 24.156 25.548 hybrid contribution -1.404 0.814 -1.838 2.452 sum -8.315 5.442 22.318 24.431 Atomic orbital electron populations 1.22483 0.99153 1.01389 0.99054 1.19068 0.90323 0.93599 0.83375 0.92559 1.21164 1.32453 1.14251 0.88192 0.89974 1.24898 0.95733 0.96499 0.95721 1.69875 1.45240 1.40161 0.97941 0.86969 0.80474 0.83957 0.77527 1.20443 1.18905 1.22118 1.57417 1.70041 1.20000 1.35000 1.21222 1.02100 0.81737 0.98804 1.01922 0.73493 0.73165 0.72404 1.93549 1.68732 1.60627 1.74366 1.93617 1.74132 1.56011 1.71799 1.56268 1.62278 1.17507 1.52652 1.19824 0.95247 0.91565 0.88183 1.18662 0.96277 1.01093 0.96142 1.25613 1.05173 1.05051 0.96272 1.84393 1.22105 1.40137 1.12803 1.25550 1.06332 1.07505 0.95655 1.19782 0.96936 1.01422 0.89609 1.98417 1.74683 1.96842 1.30797 0.93366 0.92183 0.94779 0.92476 0.92669 0.93147 0.90836 0.75363 0.90274 0.89266 0.80477 0.80756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.65 37.16 0.32 -2.95 16 2 C 0.24 5.53 2.21 -69.08 -0.15 5.38 16 3 H 0.06 1.38 5.97 -51.93 -0.31 1.07 16 4 C -0.52 -14.33 8.95 -34.44 -0.31 -14.63 16 5 H 0.08 2.44 7.89 -52.49 -0.41 2.03 16 6 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 8 Si 0.88 21.55 24.37 -169.99 -4.14 17.40 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.09 16 10 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 N -0.98 -19.20 3.12 -115.84 -0.36 -19.56 16 13 C 0.11 1.80 9.53 59.85 0.57 2.37 16 14 S 2.78 51.26 6.09 -107.50 -0.66 50.60 16 15 O -0.99 -19.30 16.68 -57.17 -0.95 -20.25 16 16 O -0.97 -21.62 16.70 -57.17 -0.95 -22.58 16 17 N -1.13 -15.43 6.05 -11.66 -0.07 -15.50 16 18 C 0.18 2.04 6.07 -5.20 -0.03 2.01 16 19 C -0.11 -1.07 5.20 -106.22 -0.55 -1.63 16 20 C -0.18 -1.51 10.95 29.04 0.32 -1.19 16 21 S 0.14 0.99 23.34 -107.50 -2.51 -1.52 16 22 C -0.21 -1.73 11.08 29.05 0.32 -1.41 16 23 C -0.04 -0.38 6.26 -41.17 -0.26 -0.64 16 24 Cl -0.04 -0.40 28.24 -51.86 -1.46 -1.87 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 31 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 32 H 0.41 5.20 8.64 -34.47 -0.30 4.90 16 33 H 0.08 0.87 7.76 -51.93 -0.40 0.47 16 34 H 0.09 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -33.73 336.21 -9.09 -42.82 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.95 Total: 2.27 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.13 Total: -10.67 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.34 Total: -61.27 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.91 Total: -42.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.40 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -3.16 Total: 49.08 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.46 Total: -1.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.73 -9.09 -42.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885488249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds