Wall clock time and date at job start Tue Mar 31 2020 20:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46509 * 120.00008 * 2 1 4 4 C 1.50703 * 109.47080 * 274.99921 * 3 2 1 5 5 H 1.07998 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00113 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00111 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99668 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47277 * 90.00228 * 8 6 4 10 10 H 1.48503 * 109.46854 * 209.99887 * 8 6 4 11 11 H 1.48495 * 109.47307 * 329.99456 * 8 6 4 12 12 S 1.65598 * 120.00096 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.39886 * 336.45928 * 12 2 1 14 14 O 1.42096 * 106.40080 * 203.54042 * 12 2 1 15 15 N 1.65606 * 107.21714 * 89.99924 * 12 2 1 16 16 C 1.48427 * 127.98120 * 270.08979 * 15 12 2 17 17 C 1.54395 * 104.65420 * 140.37125 * 16 15 12 18 18 H 1.08997 * 117.61464 * 244.78555 * 17 16 15 19 19 C 1.53000 * 118.12036 * 87.19060 * 17 16 15 20 20 H 1.08998 * 117.44561 * 16.10588 * 19 17 16 21 21 Br 1.96595 * 117.44040 * 160.81438 * 19 17 16 22 22 C 1.53003 * 60.55777 * 268.46083 * 19 17 16 23 23 H 1.08998 * 120.26550 * 248.53087 * 22 19 17 24 24 C 1.48146 * 127.83500 * 90.00208 * 15 12 2 25 25 H 1.08995 * 109.46909 * 270.00486 * 1 2 3 26 26 H 1.09003 * 109.46920 * 30.00264 * 1 2 3 27 27 H 1.08994 * 109.47096 * 149.99727 * 1 2 3 28 28 H 1.09000 * 109.46995 * 34.99846 * 3 2 1 29 29 H 1.08998 * 109.47027 * 155.00207 * 3 2 1 30 30 H 0.97005 * 119.99761 * 180.02562 * 7 6 4 31 31 H 1.09004 * 110.39413 * 21.57793 * 16 15 12 32 32 H 1.09006 * 110.49084 * 259.21824 * 16 15 12 33 33 H 1.09002 * 110.40776 * 100.80029 * 24 15 12 34 34 H 1.09002 * 110.40863 * 338.48437 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6664 7 7 3.1258 3.3843 -2.9016 8 14 3.7139 3.9403 -0.2519 9 1 5.1112 3.5055 0.0005 10 1 3.6999 5.3836 -0.6008 11 1 2.8981 3.7183 0.9689 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5449 15 7 2.5381 -1.8593 -1.5810 16 6 1.6592 -2.6773 -2.4537 17 6 1.7221 -1.9836 -3.8316 18 1 0.8037 -1.5405 -4.2165 19 6 2.8458 -2.3837 -4.7898 20 1 3.3800 -3.3100 -4.5787 21 35 2.6058 -1.9604 -6.6945 22 6 3.0584 -1.2124 -3.8286 23 1 3.1353 -0.1947 -4.2112 24 6 3.6859 -1.5077 -2.4492 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6502 2.0044 0.5894 29 1 3.1858 1.1177 0.4343 30 1 3.5893 4.2180 -3.0782 31 1 0.6377 -2.6749 -2.0733 32 1 2.0352 -3.6981 -2.5245 33 1 4.3803 -2.3450 -2.5189 34 1 4.1952 -0.6233 -2.0662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885702568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:10 Heat of formation + Delta-G solvation = -25.814701 kcal Electronic energy + Delta-G solvation = -20651.971900 eV Core-core repulsion = 17373.594762 eV Total energy + Delta-G solvation = -3278.377138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 338.009 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.48356 -36.82204 -35.67777 -35.38808 -33.35466 -32.48713 -29.86048 -28.56091 -28.29307 -25.24989 -24.42158 -21.96609 -20.98457 -20.17244 -18.57107 -17.58078 -16.94860 -16.77978 -15.69771 -15.31917 -14.85165 -14.49738 -14.01988 -13.57897 -13.17371 -12.86928 -12.59977 -12.48703 -12.44343 -12.29354 -11.90529 -11.76724 -11.43801 -11.43075 -11.30078 -11.22054 -10.83725 -10.77755 -10.52779 -10.43053 -10.26071 -9.63682 -9.60645 -9.50885 -8.95585 -8.69037 -8.15289 -6.20241 -4.20803 1.03471 1.60780 3.22706 3.28043 3.32138 3.33564 3.34514 3.99047 4.31378 4.48028 4.52883 4.74590 4.82902 5.10020 5.12737 5.32451 5.41868 5.52640 5.62460 5.72797 5.94984 5.98202 6.07460 6.12254 6.29167 6.32860 6.48409 6.51539 6.78929 7.05211 7.31926 7.49509 8.36669 8.83763 9.40696 10.91479 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.005334 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.485189 B = 5247.696717 C = 6842.467076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.990 5.990 3 C 0.212 3.788 4 C -0.542 4.542 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.866 3.134 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.265 1.265 12 S 2.805 3.195 13 O -0.991 6.991 14 O -0.974 6.974 15 N -1.018 6.018 16 C 0.157 3.843 17 C -0.156 4.156 18 H 0.130 0.870 19 C -0.091 4.091 20 H 0.135 0.865 21 Br -0.118 7.118 22 C -0.132 4.132 23 H 0.143 0.857 24 C 0.158 3.842 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -11.584 -4.844 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.831 5.831 3 C 0.089 3.911 4 C -0.581 4.581 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.693 3.307 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.189 1.189 12 S 2.814 3.186 13 O -0.975 6.975 14 O -0.959 6.959 15 N -0.855 5.855 16 C 0.031 3.969 17 C -0.177 4.177 18 H 0.148 0.852 19 C -0.187 4.187 20 H 0.152 0.848 21 Br -0.036 7.036 22 C -0.153 4.153 23 H 0.161 0.839 24 C 0.032 3.968 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.275 -11.736 -4.682 12.839 hybrid contribution 0.237 0.956 0.460 1.087 sum -2.038 -10.780 -4.221 11.755 Atomic orbital electron populations 1.21248 0.79610 1.02491 1.00685 1.57484 1.14437 1.22757 1.88394 1.19630 0.91984 0.80840 0.98668 1.21447 1.37233 1.07556 0.91828 0.89820 1.24830 0.95323 0.97050 0.95360 1.69878 1.42211 1.22004 1.18711 0.86997 0.80562 0.79781 0.83355 1.19737 1.21056 1.18914 1.01244 0.72982 0.72480 0.71895 1.93552 1.67313 1.60281 1.76403 1.93571 1.40938 1.85302 1.76044 1.60128 1.30548 1.64941 1.29833 1.21437 0.94997 0.93502 0.86974 1.23964 0.94478 1.03593 0.95642 0.85209 1.25646 1.05907 1.02374 0.84817 0.84756 1.97347 1.97794 1.95397 1.13083 1.24108 0.98575 0.97304 0.95299 0.83888 1.21440 0.87269 1.01401 0.86718 0.93600 0.90529 0.92708 0.94587 0.94013 0.92484 0.89687 0.90907 0.91364 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.72 10.31 59.85 0.62 2.33 16 2 N -0.99 -19.27 3.23 -123.05 -0.40 -19.67 16 3 C 0.21 4.78 4.48 -5.19 -0.02 4.76 16 4 C -0.54 -13.62 9.94 -34.44 -0.34 -13.96 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -24.86 13.96 55.43 0.77 -24.09 16 8 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 12 S 2.80 53.12 6.40 -107.50 -0.69 52.44 16 13 O -0.99 -19.29 16.93 -57.17 -0.97 -20.26 16 14 O -0.97 -21.19 16.39 -57.17 -0.94 -22.13 16 15 N -1.02 -16.34 3.79 -110.06 -0.42 -16.76 16 16 C 0.16 2.01 6.90 -2.25 -0.02 2.00 16 17 C -0.16 -1.99 6.95 -89.21 -0.62 -2.61 16 18 H 0.13 1.66 8.14 -51.93 -0.42 1.23 16 19 C -0.09 -1.08 6.53 -26.73 -0.17 -1.25 16 20 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 21 Br -0.12 -1.48 34.18 -68.01 -2.32 -3.81 16 22 C -0.13 -1.93 6.95 -89.22 -0.62 -2.55 16 23 H 0.14 2.49 8.14 -51.93 -0.42 2.07 16 24 C 0.16 2.43 6.87 -2.41 -0.02 2.41 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 28 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 29 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -29.87 318.37 -10.62 -40.49 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.50 Total: 0.36 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.29 Total: -6.91 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.04 Total: -60.52 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.91 Total: -42.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.69 Total: 52.44 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -2.32 Total: -3.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.87 -10.62 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885702568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.673 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds