Wall clock time and date at job start Tue Mar 31 2020 20:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46509 * 120.00008 * 2 1 4 4 C 1.50703 * 109.47080 * 274.99921 * 3 2 1 5 5 H 1.07998 * 119.99713 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00113 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00111 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99668 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47277 * 90.00228 * 8 6 4 10 10 H 1.48503 * 109.46854 * 209.99887 * 8 6 4 11 11 H 1.48495 * 109.47307 * 329.99456 * 8 6 4 12 12 S 1.65598 * 120.00096 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.39886 * 336.45928 * 12 2 1 14 14 O 1.42096 * 106.40080 * 203.54042 * 12 2 1 15 15 N 1.65606 * 107.21714 * 89.99924 * 12 2 1 16 16 C 1.48427 * 127.98120 * 270.08979 * 15 12 2 17 17 C 1.54395 * 104.65420 * 140.37125 * 16 15 12 18 18 H 1.08997 * 117.61464 * 244.78555 * 17 16 15 19 19 C 1.53000 * 118.12036 * 87.19060 * 17 16 15 20 20 H 1.08998 * 117.44561 * 16.10588 * 19 17 16 21 21 Br 1.96595 * 117.44040 * 160.81438 * 19 17 16 22 22 C 1.53003 * 60.55777 * 268.46083 * 19 17 16 23 23 H 1.08998 * 120.26550 * 248.53087 * 22 19 17 24 24 C 1.48146 * 127.83500 * 90.00208 * 15 12 2 25 25 H 1.08995 * 109.46909 * 270.00486 * 1 2 3 26 26 H 1.09003 * 109.46920 * 30.00264 * 1 2 3 27 27 H 1.08994 * 109.47096 * 149.99727 * 1 2 3 28 28 H 1.09000 * 109.46995 * 34.99846 * 3 2 1 29 29 H 1.08998 * 109.47027 * 155.00207 * 3 2 1 30 30 H 0.97005 * 119.99761 * 180.02562 * 7 6 4 31 31 H 1.09004 * 110.39413 * 21.57793 * 16 15 12 32 32 H 1.09006 * 110.49084 * 259.21824 * 16 15 12 33 33 H 1.09002 * 110.40776 * 100.80029 * 24 15 12 34 34 H 1.09002 * 110.40863 * 338.48437 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6664 7 7 3.1258 3.3843 -2.9016 8 14 3.7139 3.9403 -0.2519 9 1 5.1112 3.5055 0.0005 10 1 3.6999 5.3836 -0.6008 11 1 2.8981 3.7183 0.9689 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5449 15 7 2.5381 -1.8593 -1.5810 16 6 1.6592 -2.6773 -2.4537 17 6 1.7221 -1.9836 -3.8316 18 1 0.8037 -1.5405 -4.2165 19 6 2.8458 -2.3837 -4.7898 20 1 3.3800 -3.3100 -4.5787 21 35 2.6058 -1.9604 -6.6945 22 6 3.0584 -1.2124 -3.8286 23 1 3.1353 -0.1947 -4.2112 24 6 3.6859 -1.5077 -2.4492 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6502 2.0044 0.5894 29 1 3.1858 1.1177 0.4343 30 1 3.5893 4.2180 -3.0782 31 1 0.6377 -2.6749 -2.0733 32 1 2.0352 -3.6981 -2.5245 33 1 4.3803 -2.3450 -2.5189 34 1 4.1952 -0.6233 -2.0662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885702568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:09 Heat of formation + Delta-G solvation = -46.162880 kcal Electronic energy + Delta-G solvation = -20652.854263 eV Core-core repulsion = 17373.594762 eV Total energy + Delta-G solvation = -3279.259501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 338.009 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61668 -38.38020 -37.28647 -36.95901 -34.54081 -34.44540 -30.90370 -30.25659 -29.50801 -26.78927 -25.62154 -23.75883 -22.05895 -21.32746 -19.99264 -19.19310 -18.65442 -18.37540 -17.25247 -16.53503 -16.26648 -15.94591 -15.55523 -14.92951 -14.64859 -14.41751 -14.16713 -13.90801 -13.67525 -13.62206 -13.44160 -13.30303 -13.15532 -13.01496 -12.61599 -12.50569 -12.37480 -12.22034 -12.00654 -11.90413 -11.61835 -11.50135 -10.74030 -10.65766 -10.55771 -10.20391 -9.72972 -8.24798 -6.27755 -0.42588 0.59858 1.36908 1.41191 1.46953 1.88933 2.24116 2.36304 2.53146 3.09581 3.22436 3.45186 3.55653 3.65343 4.00619 4.11218 4.17423 4.47097 4.58773 4.64483 4.67782 4.72701 4.81896 4.91237 4.99396 5.00976 5.12094 5.20689 5.24193 5.38323 5.49723 5.79262 6.34743 6.78019 7.36028 8.89105 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.005334 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.485189 B = 5247.696717 C = 6842.467076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.998 5.998 3 C 0.219 3.781 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.028 3.972 7 N -0.930 5.930 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.247 1.247 12 S 2.817 3.183 13 O -0.994 6.994 14 O -1.006 7.006 15 N -1.021 6.021 16 C 0.152 3.848 17 C -0.146 4.146 18 H 0.129 0.871 19 C -0.064 4.064 20 H 0.165 0.835 21 Br -0.123 7.123 22 C -0.154 4.154 23 H 0.106 0.894 24 C 0.159 3.841 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -13.193 -4.330 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.838 5.838 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.172 4.172 7 N -0.570 5.570 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.170 1.170 12 S 2.826 3.174 13 O -0.979 6.979 14 O -0.991 6.991 15 N -0.860 5.860 16 C 0.027 3.973 17 C -0.167 4.167 18 H 0.147 0.853 19 C -0.160 4.160 20 H 0.183 0.817 21 Br -0.042 7.042 22 C -0.176 4.176 23 H 0.124 0.876 24 C 0.033 3.967 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.934 -13.359 -4.151 14.294 hybrid contribution 0.383 1.395 0.215 1.463 sum -2.552 -11.964 -3.936 12.851 Atomic orbital electron populations 1.21486 0.77735 1.03361 1.02204 1.57484 1.15817 1.21717 1.88822 1.19377 0.92168 0.82372 0.96711 1.21593 1.35746 1.06801 0.92709 0.92067 1.25515 0.96062 0.98359 0.97259 1.69998 1.43806 1.22645 1.20567 0.86197 0.79947 0.78423 0.81449 1.19891 1.20876 1.17024 1.00706 0.72162 0.72178 0.72317 1.93541 1.67213 1.60084 1.77017 1.93525 1.42537 1.85704 1.77349 1.59924 1.31462 1.65189 1.29424 1.21755 0.95318 0.94320 0.85859 1.24007 0.93821 1.02718 0.96132 0.85328 1.25722 1.04656 1.01722 0.83917 0.81715 1.97369 1.97767 1.95593 1.13424 1.23768 1.00912 0.96756 0.96131 0.87593 1.21452 0.87427 1.01221 0.86608 0.91757 0.90941 0.90639 0.93814 0.94931 0.92613 0.88565 0.87676 0.88171 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.98 10.31 127.77 1.32 4.30 16 2 N -1.00 -37.89 3.23 -543.21 -1.75 -39.64 16 3 C 0.22 9.74 4.48 85.63 0.38 10.13 16 4 C -0.53 -26.99 9.94 25.60 0.25 -26.74 16 5 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 6 C 0.03 1.48 5.47 84.65 0.46 1.95 16 7 N -0.93 -53.34 13.96 21.44 0.30 -53.04 16 8 Si 0.92 41.52 27.47 68.60 1.88 43.40 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 12 S 2.82 103.46 6.40 -56.49 -0.36 103.10 16 13 O -0.99 -36.53 16.93 -128.00 -2.17 -38.70 16 14 O -1.01 -43.51 16.39 -128.00 -2.10 -45.61 16 15 N -1.02 -31.34 3.79 -502.12 -1.90 -33.25 16 16 C 0.15 3.46 6.90 86.48 0.60 4.06 16 17 C -0.15 -3.45 6.95 -9.88 -0.07 -3.52 16 18 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 19 C -0.06 -1.38 6.53 30.60 0.20 -1.18 16 20 H 0.17 2.63 8.14 -2.39 -0.02 2.61 16 21 Br -0.12 -2.94 34.18 -20.37 -0.70 -3.64 16 22 C -0.15 -4.48 6.95 -9.88 -0.07 -4.55 16 23 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 24 C 0.16 4.81 6.87 86.53 0.59 5.41 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 27 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 28 H 0.04 1.88 7.17 -2.39 -0.02 1.87 16 29 H 0.03 1.53 6.34 -2.39 -0.02 1.51 16 30 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.98 16 32 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -64.38 318.37 -2.08 -66.45 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.05 Total: 11.07 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 3.67 Total: -10.15 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -3.36 Total: -125.93 kcal Atomic # 8 Polarization: -80.05 SS G_CDS: -4.26 Total: -84.31 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -0.36 Total: 103.10 kcal Atomic # 35 Polarization: -2.94 SS G_CDS: -0.70 Total: -3.64 kcal Total: -64.38 -2.08 -66.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885702568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.292 kcal (2) G-P(sol) polarization free energy of solvation -64.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds