Wall clock time and date at job start Tue Mar 31 2020 20:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46652 * 199.81883 * 3 2 1 5 5 C 1.36901 * 119.99496 * 83.21137 * 4 3 2 6 6 H 1.08002 * 119.99563 * 166.40610 * 5 4 3 7 7 C 1.38991 * 120.00295 * 346.40356 * 5 4 3 8 8 N 1.31411 * 119.99952 * 359.71894 * 7 5 4 9 9 Si 1.86797 * 120.00237 * 179.71843 * 7 5 4 10 10 H 1.48504 * 109.47371 * 89.99802 * 9 7 5 11 11 H 1.48495 * 109.47398 * 210.00247 * 9 7 5 12 12 H 1.48507 * 109.47048 * 330.00005 * 9 7 5 13 13 C 1.34777 * 120.00179 * 263.20547 * 4 3 2 14 14 O 1.21740 * 119.99855 * 184.80065 * 13 4 3 15 15 C 1.46464 * 119.99993 * 4.79312 * 13 4 3 16 16 S 1.76216 * 126.16619 * 85.41486 * 15 13 4 17 17 C 1.70925 * 90.38468 * 179.97438 * 16 15 13 18 18 Cl 1.73594 * 124.70535 * 180.02562 * 17 16 15 19 19 N 1.29532 * 110.58324 * 0.34839 * 17 16 15 20 20 C 1.30942 * 117.42884 * 359.72523 * 19 17 16 21 21 C 1.50700 * 123.03307 * 180.02562 * 20 19 17 22 22 F 1.39902 * 109.46898 * 272.96465 * 21 20 19 23 23 F 1.39904 * 109.46820 * 32.95677 * 21 20 19 24 24 F 1.39893 * 109.47582 * 152.96046 * 21 20 19 25 25 H 4.40634 * 5.51349 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47361 * 319.82010 * 3 2 1 27 27 H 1.09008 * 109.47153 * 79.82627 * 3 2 1 28 28 H 0.96996 * 119.99559 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3004 0.4683 5 6 3.2296 1.5522 1.8106 6 1 3.7859 2.4091 2.1608 7 6 2.6109 0.7053 2.7225 8 7 1.9293 -0.3342 2.2962 9 14 2.7482 1.0445 4.5543 10 1 1.6259 1.9181 4.9815 11 1 2.6894 -0.2377 5.3010 12 1 4.0387 1.7229 4.8367 13 6 3.4881 2.2479 -0.4222 14 8 3.9751 3.2947 -0.0358 15 6 3.2874 2.0183 -1.8547 16 16 1.8058 2.3219 -2.7591 17 6 2.5569 1.7774 -4.1947 18 17 1.7873 1.7121 -5.7493 19 7 3.7779 1.4139 -3.9603 20 6 4.2141 1.5229 -2.7305 21 6 5.6112 1.1378 -2.3172 22 9 5.6446 -0.2241 -1.9987 23 9 6.4958 1.3919 -3.3708 24 9 5.9902 1.8877 -1.1988 25 1 -1.0501 -0.0005 0.0000 26 1 3.0098 -0.7843 0.6630 27 1 3.0095 -0.1807 -1.0116 28 1 1.4972 -0.9250 2.9326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890401256.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:30 Heat of formation + Delta-G solvation = -70.883404 kcal Electronic energy + Delta-G solvation = -25211.568951 eV Core-core repulsion = 20775.284259 eV Total energy + Delta-G solvation = -4436.284692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 337.984 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.36699 -48.87413 -48.84460 -41.59430 -40.29074 -38.23179 -37.31148 -34.04487 -33.23263 -32.43255 -29.24710 -28.30873 -26.58062 -25.99001 -23.16527 -21.58557 -20.37960 -19.89557 -19.77855 -19.45621 -18.42308 -18.35632 -18.04365 -17.28128 -16.55099 -16.42031 -15.91856 -15.76972 -15.61261 -15.59659 -15.25451 -14.98117 -14.94890 -14.82789 -14.34972 -14.32324 -14.14762 -13.35724 -13.13151 -12.99046 -12.87154 -12.81747 -12.56438 -12.15326 -11.51355 -11.42275 -11.22722 -10.86935 -10.76785 -10.63531 -10.33832 -10.02999 -8.35176 -6.06042 -1.22330 -0.82238 -0.15841 0.37884 0.71094 1.22614 1.40458 1.43969 1.54602 1.75153 1.96975 2.26825 2.28595 2.41295 2.73352 2.86485 3.01471 3.10159 3.56300 3.61348 3.80061 3.96492 4.44897 5.01882 5.36792 5.42216 5.71817 5.82905 6.25533 6.93765 7.12082 7.18670 7.65953 8.53617 Molecular weight = 337.98amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.005376 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.803276 B = 5206.884567 C = 6300.854113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.143 4.143 3 C 0.232 3.768 4 N -0.416 5.416 5 C -0.340 4.340 6 H 0.090 0.910 7 C 0.009 3.991 8 N -0.864 5.864 9 Si 0.996 3.004 10 H -0.273 1.273 11 H -0.268 1.268 12 H -0.272 1.272 13 C 0.486 3.514 14 O -0.595 6.595 15 C -0.202 4.202 16 S 0.369 5.631 17 C 0.050 3.950 18 Cl 0.072 6.928 19 N -0.440 5.440 20 C 0.000 4.000 21 C 0.546 3.454 22 F -0.165 7.165 23 F -0.160 7.160 24 F -0.164 7.164 25 H 0.237 0.763 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -0.956 -11.027 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.131 5.131 5 C -0.468 4.468 6 H 0.108 0.892 7 C -0.195 4.195 8 N -0.501 5.501 9 Si 0.819 3.181 10 H -0.199 1.199 11 H -0.192 1.192 12 H -0.197 1.197 13 C 0.272 3.728 14 O -0.483 6.483 15 C -0.330 4.330 16 S 0.624 5.376 17 C -0.251 4.251 18 Cl 0.099 6.901 19 N -0.156 5.156 20 C -0.140 4.140 21 C 0.489 3.511 22 F -0.147 7.147 23 F -0.141 7.141 24 F -0.145 7.145 25 H 0.254 0.746 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.547 -0.486 -11.157 12.058 hybrid contribution 1.113 -0.281 0.944 1.486 sum -3.434 -0.767 -10.213 10.802 Atomic orbital electron populations 1.25081 0.96084 0.99480 1.05144 1.22839 0.94180 1.00811 0.96687 1.18510 0.86029 0.86835 0.97577 1.43817 1.52385 1.11090 1.05827 1.19825 1.33422 1.13211 0.80313 0.89240 1.26080 0.94069 0.94887 1.04461 1.70034 1.30296 1.13828 1.35908 0.84875 0.78774 0.78131 0.76284 1.19878 1.19236 1.19671 1.16549 0.87928 0.85318 0.82971 1.90692 1.50646 1.28014 1.78909 1.26209 0.99650 1.05857 1.01288 1.84062 1.07169 1.53159 0.93214 1.27375 0.93854 1.06443 0.97399 1.98446 1.75552 1.96487 1.19582 1.65216 1.13522 1.18098 1.18728 1.20087 0.95999 1.08958 0.88927 1.17107 0.83827 0.75070 0.75079 1.93236 1.96702 1.31886 1.92845 1.93214 1.70338 1.93811 1.56741 1.93325 1.91872 1.76331 1.52997 0.74644 0.86835 0.92033 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.54 19.24 74.32 1.43 -7.11 15 2 C -0.14 -5.90 11.00 31.13 0.34 -5.56 15 3 C 0.23 10.21 5.12 84.57 0.43 10.64 15 4 N -0.42 -20.51 2.60 -650.15 -1.69 -22.20 15 5 C -0.34 -17.93 9.46 84.08 0.80 -17.14 15 6 H 0.09 5.04 7.22 -2.91 -0.02 5.02 15 7 C 0.01 0.45 5.36 84.94 0.45 0.90 15 8 N -0.86 -40.66 7.98 21.67 0.17 -40.49 15 9 Si 1.00 39.39 29.55 68.60 2.03 41.42 15 10 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 11 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 13 C 0.49 23.45 5.70 86.39 0.49 23.95 15 14 O -0.60 -32.81 16.15 -4.48 -0.07 -32.88 15 15 C -0.20 -7.95 4.39 24.07 0.11 -7.85 15 16 S 0.37 10.77 23.20 -56.49 -1.31 9.46 15 17 C 0.05 1.39 8.02 130.58 1.05 2.43 15 18 Cl 0.07 1.47 29.33 -2.72 -0.08 1.39 15 19 N -0.44 -14.51 10.35 -180.46 -1.87 -16.38 15 20 C 0.00 0.00 5.99 42.35 0.25 0.25 15 21 C 0.55 20.57 3.45 71.24 0.25 20.82 15 22 F -0.17 -6.02 17.30 44.97 0.78 -5.24 15 23 F -0.16 -5.53 17.19 44.97 0.77 -4.76 15 24 F -0.16 -7.03 14.85 44.97 0.67 -6.36 15 25 H 0.24 6.25 7.80 -4.41 -0.03 6.22 15 26 H 0.11 5.33 6.34 -2.39 -0.02 5.31 15 27 H 0.06 2.48 6.51 -2.38 -0.02 2.46 15 28 H 0.28 12.40 8.31 -92.71 -0.77 11.63 15 Total: -1.00 -59.85 303.74 6.26 -53.59 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.26 Total: 1.11 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 5.60 Total: 21.33 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -3.38 Total: -79.06 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.07 Total: -32.88 kcal Atomic # 9 Polarization: -18.58 SS G_CDS: 2.22 Total: -16.36 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 10.77 SS G_CDS: -1.31 Total: 9.46 kcal Atomic # 17 Polarization: 1.47 SS G_CDS: -0.08 Total: 1.39 kcal Total: -59.85 6.26 -53.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401256.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.297 kcal (2) G-P(sol) polarization free energy of solvation -59.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds