Wall clock time and date at job start Tue Mar 31 2020 20:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.70925 * 125.56915 * 2 1 4 4 C 1.70771 * 91.14737 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 124.72940 * 180.02562 * 4 3 2 6 6 N 1.28769 * 110.54585 * 0.02562 * 4 3 2 7 7 C 1.33654 * 115.71829 * 359.97438 * 6 4 3 8 8 C 1.47245 * 123.13784 * 180.02562 * 7 6 4 9 9 O 1.21636 * 120.00074 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99856 * 359.97438 * 8 7 6 11 11 S 1.65598 * 119.99873 * 179.97438 * 10 8 7 12 12 O 1.42099 * 104.28157 * 181.07066 * 11 10 8 13 13 O 1.42107 * 104.27526 * 308.92527 * 11 10 8 14 14 C 1.81404 * 104.45284 * 64.99636 * 11 10 8 15 15 C 1.52999 * 109.47352 * 180.02562 * 14 11 10 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00363 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99487 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00287 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46696 * 90.00316 * 20 18 16 22 22 H 1.48501 * 109.47053 * 210.00293 * 20 18 16 23 23 H 1.48497 * 109.47115 * 330.00296 * 20 18 16 24 24 H 1.08994 * 109.46986 * 270.04002 * 1 2 3 25 25 H 1.08998 * 109.46949 * 30.03805 * 1 2 3 26 26 H 1.09003 * 109.47280 * 150.03905 * 1 2 3 27 27 H 0.96998 * 120.00139 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.46855 * 300.00147 * 14 11 10 29 29 H 1.09000 * 109.46900 * 59.99987 * 14 11 10 30 30 H 1.08997 * 109.46815 * 300.00381 * 15 14 11 31 31 H 1.09007 * 109.47039 * 59.99755 * 15 14 11 32 32 H 0.97006 * 119.99639 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5013 1.3903 0.0000 4 6 3.9100 0.4250 0.0008 5 17 5.5323 1.0428 0.0018 6 7 3.6012 -0.8251 0.0004 7 6 2.2931 -1.0994 0.0001 8 6 1.7583 -2.4713 0.0003 9 8 0.5560 -2.6554 0.0005 10 7 2.6011 -3.5231 0.0002 11 16 1.9997 -5.0660 0.0011 12 8 3.1552 -5.8926 0.0265 13 8 1.0667 -5.0778 1.0729 14 6 1.1427 -5.2187 -1.5905 15 6 0.5358 -6.6180 -1.7108 16 6 -0.1766 -6.7446 -3.0326 17 1 -0.1944 -5.9106 -3.7186 18 6 -0.8049 -7.9255 -3.3669 19 7 -0.7827 -8.9414 -2.5318 20 14 -1.6874 -8.0827 -5.0058 21 1 -0.7393 -8.5856 -6.0322 22 1 -2.8194 -9.0341 -4.8691 23 1 -2.2049 -6.7535 -5.4187 24 1 -0.3633 0.0007 1.0276 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3634 -0.8903 -0.5132 27 1 3.5599 -3.3763 -0.0003 28 1 0.3499 -4.4729 -1.6492 29 1 1.8525 -5.0591 -2.4021 30 1 1.3283 -7.3640 -1.6518 31 1 -0.1741 -6.7772 -0.8990 32 1 -1.2244 -9.7723 -2.7671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892933209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:18 Heat of formation + Delta-G solvation = -103.590391 kcal Electronic energy + Delta-G solvation = -22110.344882 eV Core-core repulsion = 18349.942600 eV Total energy + Delta-G solvation = -3760.402282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10237 -40.17276 -38.35031 -38.04168 -37.29634 -35.99302 -35.79977 -33.74468 -33.19744 -29.17474 -27.66302 -25.87318 -24.70049 -23.61961 -21.70113 -20.83732 -19.95390 -19.36631 -18.56654 -18.00989 -17.53377 -17.21624 -16.89396 -16.70375 -16.54505 -15.99878 -15.73097 -15.22085 -14.61742 -14.50153 -14.23081 -14.12608 -13.79830 -13.60371 -13.43457 -13.32846 -13.06606 -12.95065 -12.85716 -12.78070 -12.60560 -12.35400 -12.28060 -12.06552 -11.78405 -11.55760 -11.15868 -11.09260 -10.65405 -10.63639 -10.09084 -8.27204 -6.41416 -1.10334 -0.88219 -0.50318 0.18795 0.28574 0.62092 1.31190 1.40910 1.43179 1.54445 1.72253 2.36725 2.50044 2.72828 3.03173 3.06578 3.42247 3.61768 3.75418 3.96666 3.99619 4.18005 4.64092 4.66089 4.72933 5.20311 5.21460 5.21542 5.40478 5.66240 5.89035 6.02972 6.24251 6.70963 7.28521 8.85291 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002912 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.952678 B = 9613.854737 C =10100.824430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.174 4.174 3 S 0.396 5.604 4 C 0.019 3.981 5 Cl 0.044 6.956 6 N -0.448 5.448 7 C -0.028 4.028 8 C 0.620 3.380 9 O -0.502 6.502 10 N -1.032 6.032 11 S 2.597 3.403 12 O -0.969 6.969 13 O -0.970 6.970 14 C -0.573 4.573 15 C 0.023 3.977 16 C -0.540 4.540 17 H 0.075 0.925 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.976 3.024 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.259 1.259 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.448 0.552 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.014 0.986 31 H 0.009 0.991 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 28.836 3.746 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.299 4.299 3 S 0.650 5.350 4 C -0.285 4.285 5 Cl 0.072 6.928 6 N -0.166 5.166 7 C -0.164 4.164 8 C 0.406 3.594 9 O -0.375 6.375 10 N -0.797 5.797 11 S 2.696 3.304 12 O -0.959 6.959 13 O -0.960 6.960 14 C -0.707 4.707 15 C -0.016 4.016 16 C -0.579 4.579 17 H 0.093 0.907 18 C -0.201 4.201 19 N -0.572 5.572 20 Si 0.799 3.201 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.183 1.183 24 H 0.119 0.881 25 H 0.129 0.871 26 H 0.108 0.892 27 H 0.287 0.713 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.033 0.967 31 H 0.027 0.973 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.575 28.646 4.535 30.244 hybrid contribution 0.131 -1.476 -0.965 1.769 sum 8.705 27.170 3.569 28.753 Atomic orbital electron populations 1.20817 0.83648 1.06039 1.05360 1.26288 1.05470 0.97159 1.01010 1.82671 0.88810 1.02632 1.60936 1.27284 0.96851 0.93696 1.10683 1.98457 1.14382 1.83303 1.96666 1.66506 1.16675 1.19168 1.14261 1.19458 0.87621 0.94203 1.15090 1.17210 0.85062 0.84090 0.73060 1.90973 1.14068 1.85313 1.47150 1.54803 1.20593 1.24422 1.79836 1.05569 0.74315 0.72167 0.78329 1.93565 1.49318 1.64957 1.88099 1.93551 1.65128 1.84733 1.52622 1.30220 1.13600 1.08124 1.18754 1.18846 0.95786 0.88129 0.98852 1.21462 1.34360 0.99644 1.02471 0.90674 1.26119 0.97034 0.95253 1.01706 1.70102 1.44627 1.04271 1.38202 0.85279 0.77945 0.78605 0.78229 1.19401 1.20717 1.18256 0.88114 0.87085 0.89217 0.71267 0.84085 0.83202 0.96731 0.97273 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.65 71.24 0.69 -0.73 16 2 C -0.17 -2.88 6.40 24.97 0.16 -2.72 16 3 S 0.40 3.73 22.93 -56.49 -1.30 2.44 16 4 C 0.02 0.30 7.98 130.69 1.04 1.34 16 5 Cl 0.04 0.58 29.33 -2.72 -0.08 0.50 16 6 N -0.45 -9.67 10.13 -183.80 -1.86 -11.53 16 7 C -0.03 -0.65 6.70 40.52 0.27 -0.38 16 8 C 0.62 18.18 7.53 86.61 0.65 18.84 16 9 O -0.50 -16.91 12.19 12.22 0.15 -16.76 16 10 N -1.03 -30.48 5.60 -176.00 -0.99 -31.47 16 11 S 2.60 100.23 5.11 -56.49 -0.29 99.94 16 12 O -0.97 -40.74 18.08 -127.65 -2.31 -43.05 16 13 O -0.97 -44.20 17.04 -120.72 -2.06 -46.26 16 14 C -0.57 -23.28 5.82 71.98 0.42 -22.86 16 15 C 0.02 1.23 4.98 29.85 0.15 1.38 16 16 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 19 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 20 Si 0.98 43.66 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 1.80 5.99 -2.39 -0.01 1.79 16 27 H 0.45 10.90 8.31 -96.75 -0.80 10.10 16 28 H 0.14 5.46 7.19 -2.39 -0.02 5.44 16 29 H 0.15 5.16 8.14 -2.39 -0.02 5.14 16 30 H 0.01 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -78.87 326.44 -1.94 -80.81 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.40 Total: 11.61 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.08 Total: -35.08 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -2.56 Total: -99.84 kcal Atomic # 8 Polarization: -101.85 SS G_CDS: -4.22 Total: -106.06 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 103.97 SS G_CDS: -1.58 Total: 102.38 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -0.08 Total: 0.50 kcal Total: -78.87 -1.94 -80.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892933209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.781 kcal (2) G-P(sol) polarization free energy of solvation -78.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds