Wall clock time and date at job start Tue Mar 31 2020 20:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99805 * 2 1 4 4 C 1.50701 * 109.47353 * 270.00131 * 3 2 1 5 5 H 1.07997 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99608 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00595 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99764 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47463 * 59.99400 * 8 6 4 10 10 H 1.48504 * 109.47472 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46958 * 299.99772 * 8 6 4 12 12 C 1.34771 * 119.99882 * 180.02562 * 2 1 3 13 13 O 1.21555 * 119.99795 * 183.35131 * 12 2 1 14 14 C 1.47872 * 120.00050 * 3.34109 * 12 2 1 15 15 C 1.39893 * 125.69413 * 173.48455 * 14 12 2 16 16 C 1.38598 * 107.59066 * 180.02562 * 15 14 12 17 17 N 1.34114 * 132.31689 * 180.02562 * 16 15 14 18 18 C 1.31126 * 120.85261 * 179.97438 * 17 16 15 19 19 C 1.40415 * 120.28888 * 359.97438 * 18 17 16 20 20 Br 1.89095 * 120.27677 * 180.02562 * 19 18 17 21 21 C 1.35529 * 119.44485 * 0.02562 * 19 18 17 22 22 N 1.36690 * 119.12805 * 359.97438 * 21 19 18 23 23 N 1.32385 * 125.69559 * 353.50733 * 14 12 2 24 24 H 1.09002 * 109.46970 * 264.10113 * 1 2 3 25 25 H 1.09001 * 109.47085 * 24.09454 * 1 2 3 26 26 H 1.08999 * 109.47118 * 144.09259 * 1 2 3 27 27 H 1.09005 * 109.47190 * 30.00728 * 3 2 1 28 28 H 1.09002 * 109.46542 * 150.00038 * 3 2 1 29 29 H 0.96997 * 120.00054 * 179.97438 * 7 6 4 30 30 H 1.08000 * 126.20505 * 0.04416 * 15 14 12 31 31 H 1.08003 * 119.85422 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.43211 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.5542 3.6177 -0.6730 8 14 3.4376 3.4173 -3.4337 9 1 2.1399 3.5956 -4.1331 10 1 4.1802 4.7034 -3.4337 11 1 4.2394 2.3823 -4.1345 12 6 2.1389 -1.1672 -0.0005 13 8 3.3529 -1.1681 0.0610 14 6 1.4014 -2.4466 -0.0757 15 6 1.9776 -3.7140 -0.2133 16 6 0.9478 -4.6411 -0.2445 17 7 0.9391 -5.9773 -0.3596 18 6 -0.1897 -6.6445 -0.3631 19 6 -1.4136 -5.9664 -0.2451 20 35 -3.0412 -6.9291 -0.2495 21 6 -1.4186 -4.6162 -0.1282 22 7 -0.2284 -3.9440 -0.1272 23 7 0.0857 -2.5840 -0.0245 24 1 -0.3633 -0.1056 1.0222 25 1 -0.3633 0.9381 -0.4195 26 1 -0.3633 -0.8324 -0.6027 27 1 1.6085 2.0284 0.5140 28 1 3.1499 1.1383 0.5139 29 1 4.0316 4.4432 -0.8502 30 1 3.0333 -3.9307 -0.2824 31 1 -0.1780 -7.7204 -0.4571 32 1 -2.3507 -4.0786 -0.0361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900356298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:26 Heat of formation + Delta-G solvation = 107.549929 kcal Electronic energy + Delta-G solvation = -20241.616607 eV Core-core repulsion = 16865.871393 eV Total energy + Delta-G solvation = -3375.745213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.58766 -39.33782 -37.85638 -35.01929 -34.55563 -32.90651 -32.44853 -30.32451 -29.04655 -27.94011 -26.12913 -25.33840 -24.05939 -23.08343 -21.65929 -19.25237 -18.38823 -17.68454 -16.76708 -16.62793 -16.37236 -15.44506 -15.24907 -14.79658 -14.56006 -14.29490 -13.81925 -13.42902 -13.17749 -12.83239 -12.47405 -12.27491 -12.19479 -12.09364 -11.34934 -11.22147 -11.08069 -10.93756 -10.82056 -10.59218 -10.23792 -10.11446 -9.74022 -9.55903 -9.40470 -8.46637 -8.24201 -7.74859 -6.08005 -4.13590 0.01473 0.32523 0.67499 1.80199 1.83950 2.94539 3.31177 3.33329 3.35494 3.39802 3.61375 3.74740 3.80754 3.94800 4.39072 4.43669 4.79428 4.82351 5.17132 5.26343 5.38553 5.62446 5.83948 5.91068 6.02021 6.12920 6.40010 6.90411 7.06336 7.18271 7.33641 7.42921 7.87375 8.15891 8.21983 8.73077 8.92838 9.51520 11.00097 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.002479 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.781900 B =11293.347609 C =11585.824831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.578 5.578 3 C 0.244 3.756 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.578 3.422 13 O -0.517 6.517 14 C 0.098 3.902 15 C -0.188 4.188 16 C 0.240 3.760 17 N -0.440 5.440 18 C 0.199 3.801 19 C -0.213 4.213 20 Br 0.002 6.998 21 C 0.209 3.791 22 N -0.316 5.316 23 N -0.263 5.263 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.177 0.823 31 H 0.186 0.814 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.948 -23.406 2.162 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.308 5.308 3 C 0.125 3.875 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.360 3.640 13 O -0.391 6.391 14 C -0.063 4.063 15 C -0.218 4.218 16 C 0.016 3.984 17 N -0.150 5.150 18 C 0.011 3.989 19 C -0.299 4.299 20 Br 0.086 6.914 21 C 0.072 3.928 22 N -0.088 5.088 23 N -0.092 5.092 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.194 0.806 31 H 0.203 0.797 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.831 -22.989 2.298 28.584 hybrid contribution 0.230 0.486 -1.001 1.136 sum -16.602 -22.503 1.296 27.994 Atomic orbital electron populations 1.22006 0.80284 1.03260 1.01137 1.48131 1.07089 1.07155 1.68466 1.19461 0.92762 0.77329 0.97909 1.21373 1.37030 1.06615 0.92030 0.92346 1.24924 0.95173 0.96244 0.97591 1.69917 1.38041 1.14366 1.30863 0.86527 0.78407 0.77870 0.84456 1.20215 1.21096 1.20068 1.16905 0.86371 0.81201 0.79503 1.90810 1.12240 1.85716 1.50378 1.22840 0.90423 0.96531 0.96476 1.21118 0.99648 0.87850 1.13211 1.20564 0.86674 0.88609 1.02543 1.68320 1.28238 1.03731 1.14742 1.23371 0.84885 1.01105 0.89553 1.22227 0.96044 0.94081 1.17573 1.96825 1.24235 1.72442 1.97946 1.21938 0.89674 0.90691 0.90536 1.47590 1.05800 1.08305 1.47131 1.78625 1.14671 0.87004 1.28936 0.93385 0.90547 0.90193 0.94331 0.93301 0.92526 0.80582 0.79666 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.60 59.85 0.57 1.92 16 2 N -0.58 -12.77 2.86 -184.06 -0.53 -13.30 16 3 C 0.24 6.39 5.16 -5.19 -0.03 6.36 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.58 12.77 7.68 -12.32 -0.09 12.67 16 13 O -0.52 -13.15 16.45 5.32 0.09 -13.06 16 14 C 0.10 1.78 6.76 -83.07 -0.56 1.22 16 15 C -0.19 -3.08 10.66 -38.83 -0.41 -3.50 16 16 C 0.24 3.44 7.90 -155.43 -1.23 2.21 16 17 N -0.44 -5.35 10.48 -12.21 -0.13 -5.47 16 18 C 0.20 1.67 11.05 -17.03 -0.19 1.48 16 19 C -0.21 -1.64 6.21 -39.73 -0.25 -1.88 16 20 Br 0.00 0.01 33.72 -68.01 -2.29 -2.28 16 21 C 0.21 1.92 11.03 -16.35 -0.18 1.74 16 22 N -0.32 -4.20 3.90 -12.18 -0.05 -4.25 16 23 N -0.26 -4.16 9.12 33.23 0.30 -3.86 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 26 H 0.08 1.31 5.33 -51.93 -0.28 1.03 16 27 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.18 2.75 8.06 -52.49 -0.42 2.33 16 31 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -33.21 308.80 -7.75 -40.96 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -2.73 Total: -3.08 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.79 Total: 8.53 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.34 Total: -52.48 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.21 -7.75 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900356298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.509 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds