Wall clock time and date at job start Tue Mar 31 2020 20:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46500 * 119.99805 * 2 1 4 4 C 1.50701 * 109.47353 * 270.00131 * 3 2 1 5 5 H 1.07997 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99608 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00595 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99764 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47463 * 59.99400 * 8 6 4 10 10 H 1.48504 * 109.47472 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46958 * 299.99772 * 8 6 4 12 12 C 1.34771 * 119.99882 * 180.02562 * 2 1 3 13 13 O 1.21555 * 119.99795 * 183.35131 * 12 2 1 14 14 C 1.47872 * 120.00050 * 3.34109 * 12 2 1 15 15 C 1.39893 * 125.69413 * 173.48455 * 14 12 2 16 16 C 1.38598 * 107.59066 * 180.02562 * 15 14 12 17 17 N 1.34114 * 132.31689 * 180.02562 * 16 15 14 18 18 C 1.31126 * 120.85261 * 179.97438 * 17 16 15 19 19 C 1.40415 * 120.28888 * 359.97438 * 18 17 16 20 20 Br 1.89095 * 120.27677 * 180.02562 * 19 18 17 21 21 C 1.35529 * 119.44485 * 0.02562 * 19 18 17 22 22 N 1.36690 * 119.12805 * 359.97438 * 21 19 18 23 23 N 1.32385 * 125.69559 * 353.50733 * 14 12 2 24 24 H 1.09002 * 109.46970 * 264.10113 * 1 2 3 25 25 H 1.09001 * 109.47085 * 24.09454 * 1 2 3 26 26 H 1.08999 * 109.47118 * 144.09259 * 1 2 3 27 27 H 1.09005 * 109.47190 * 30.00728 * 3 2 1 28 28 H 1.09002 * 109.46542 * 150.00038 * 3 2 1 29 29 H 0.96997 * 120.00054 * 179.97438 * 7 6 4 30 30 H 1.08000 * 126.20505 * 0.04416 * 15 14 12 31 31 H 1.08003 * 119.85422 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.43211 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.5542 3.6177 -0.6730 8 14 3.4376 3.4173 -3.4337 9 1 2.1399 3.5956 -4.1331 10 1 4.1802 4.7034 -3.4337 11 1 4.2394 2.3823 -4.1345 12 6 2.1389 -1.1672 -0.0005 13 8 3.3529 -1.1681 0.0610 14 6 1.4014 -2.4466 -0.0757 15 6 1.9776 -3.7140 -0.2133 16 6 0.9478 -4.6411 -0.2445 17 7 0.9391 -5.9773 -0.3596 18 6 -0.1897 -6.6445 -0.3631 19 6 -1.4136 -5.9664 -0.2451 20 35 -3.0412 -6.9291 -0.2495 21 6 -1.4186 -4.6162 -0.1282 22 7 -0.2284 -3.9440 -0.1272 23 7 0.0857 -2.5840 -0.0245 24 1 -0.3633 -0.1056 1.0222 25 1 -0.3633 0.9381 -0.4195 26 1 -0.3633 -0.8324 -0.6027 27 1 1.6085 2.0284 0.5140 28 1 3.1499 1.1383 0.5139 29 1 4.0316 4.4432 -0.8502 30 1 3.0333 -3.9307 -0.2824 31 1 -0.1780 -7.7204 -0.4571 32 1 -2.3507 -4.0786 -0.0361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900356298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:26 Heat of formation + Delta-G solvation = 85.867412 kcal Electronic energy + Delta-G solvation = -20242.556831 eV Core-core repulsion = 16865.871393 eV Total energy + Delta-G solvation = -3376.685438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.63674 -40.86901 -39.04400 -36.82932 -35.48022 -34.80497 -33.55950 -31.34521 -30.10711 -29.74882 -27.64898 -26.58608 -25.44314 -24.39239 -23.10815 -20.57635 -19.49535 -18.95106 -18.71839 -17.73772 -17.50807 -17.20751 -16.52931 -16.35046 -16.15758 -15.57330 -14.95764 -14.54066 -14.44126 -14.21141 -13.99998 -13.87166 -13.67891 -13.24400 -13.04498 -12.98164 -12.59443 -12.31640 -12.17956 -11.85941 -11.75543 -11.68258 -11.28052 -10.99486 -10.65572 -10.50136 -9.63805 -9.23621 -8.24800 -6.40082 -0.86860 -0.59949 -0.04904 0.54326 0.84850 1.37602 1.41804 1.49307 1.93056 2.01075 2.21119 2.38628 2.62595 2.69701 3.05444 3.14318 3.42667 3.71936 3.93937 4.12203 4.27590 4.44136 4.64130 4.70526 4.84469 4.89825 4.91402 5.11895 5.16532 5.47426 5.72699 5.87749 5.99732 6.28275 6.48347 6.66501 7.05182 7.31225 8.82727 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.002479 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.781900 B =11293.347609 C =11585.824831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.586 5.586 3 C 0.258 3.742 4 C -0.550 4.550 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.575 3.425 13 O -0.567 6.567 14 C 0.079 3.921 15 C -0.218 4.218 16 C 0.252 3.748 17 N -0.467 5.467 18 C 0.219 3.781 19 C -0.195 4.195 20 Br 0.037 6.963 21 C 0.197 3.803 22 N -0.311 5.311 23 N -0.267 5.267 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.008 0.992 29 H 0.269 0.731 30 H 0.169 0.831 31 H 0.228 0.772 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.986 -25.890 1.095 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.315 5.315 3 C 0.138 3.862 4 C -0.589 4.589 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.360 3.640 13 O -0.445 6.445 14 C -0.080 4.080 15 C -0.249 4.249 16 C 0.026 3.974 17 N -0.178 5.178 18 C 0.032 3.968 19 C -0.281 4.281 20 Br 0.121 6.879 21 C 0.061 3.939 22 N -0.084 5.084 23 N -0.097 5.097 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.245 0.755 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.954 -25.500 1.238 32.403 hybrid contribution 0.914 0.909 -0.622 1.431 sum -19.040 -24.592 0.616 31.107 Atomic orbital electron populations 1.22182 0.77322 1.03928 1.02839 1.48108 1.08879 1.06010 1.68529 1.18978 0.91460 0.79134 0.96677 1.21627 1.37574 1.06991 0.92677 0.92853 1.25835 0.94613 0.96171 1.02144 1.70031 1.38468 1.14796 1.33122 0.85450 0.78867 0.77459 0.78949 1.18524 1.20066 1.20261 1.17356 0.86109 0.82427 0.78153 1.90754 1.14478 1.86826 1.52412 1.21991 0.91450 0.94898 0.99633 1.21033 1.00138 0.88035 1.15721 1.20487 0.86369 0.89443 1.01121 1.68443 1.30020 1.02377 1.16993 1.24208 0.84043 1.02775 0.85725 1.22506 0.97354 0.93736 1.14527 1.96914 1.21983 1.71364 1.97680 1.22657 0.89330 0.91421 0.90466 1.47635 1.06936 1.07416 1.46418 1.78413 1.13006 0.88624 1.29667 0.91258 0.90465 0.88745 0.94728 0.97341 0.92164 0.81361 0.75548 0.76395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.79 9.60 127.77 1.23 4.01 16 2 N -0.59 -27.09 2.86 -854.51 -2.44 -29.53 16 3 C 0.26 14.26 5.16 85.63 0.44 14.71 16 4 C -0.55 -32.24 9.39 25.60 0.24 -32.00 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.70 5.46 84.65 0.46 1.16 16 7 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 8 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 C 0.57 26.97 7.68 86.80 0.67 27.64 16 13 O -0.57 -31.13 16.45 -3.89 -0.06 -31.19 16 14 C 0.08 2.98 6.76 42.01 0.28 3.26 16 15 C -0.22 -7.47 10.66 22.76 0.24 -7.23 16 16 C 0.25 7.03 7.90 133.01 1.05 8.08 16 17 N -0.47 -10.34 10.48 -192.53 -2.02 -12.36 16 18 C 0.22 2.79 11.05 85.33 0.94 3.73 16 19 C -0.20 -2.19 6.21 22.17 0.14 -2.06 16 20 Br 0.04 0.26 33.72 -20.37 -0.69 -0.43 16 21 C 0.20 2.93 11.03 83.31 0.92 3.85 16 22 N -0.31 -7.76 3.90 -192.44 -0.75 -8.51 16 23 N -0.27 -8.32 9.12 -48.79 -0.45 -8.76 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.08 2.65 8.03 -2.39 -0.02 2.64 16 26 H 0.09 3.05 5.33 -2.39 -0.01 3.04 16 27 H 0.03 1.91 8.07 -2.38 -0.02 1.89 16 28 H 0.01 0.53 7.38 -2.39 -0.02 0.51 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.17 5.75 8.06 -2.91 -0.02 5.73 16 31 H 0.23 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -76.27 308.80 3.69 -72.58 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 1.17 Total: 1.58 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 6.61 Total: 25.15 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -5.37 Total: -114.82 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.06 Total: -31.19 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -0.69 Total: -0.43 kcal Total: -76.27 3.69 -72.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900356298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.446 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds