Wall clock time and date at job start Tue Mar 31 2020 20:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39610 * 120.13279 * 307.48725 * 3 2 1 5 5 C 1.38403 * 119.79907 * 180.29791 * 4 3 2 6 6 O 1.35925 * 119.96973 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00054 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47226 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99431 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00458 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00393 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47184 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99903 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99888 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99840 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47085 * 89.99654 * 16 14 12 18 18 H 1.48499 * 109.46918 * 209.99817 * 16 14 12 19 19 H 1.48506 * 109.46962 * 329.99540 * 16 14 12 20 20 C 1.38875 * 120.06323 * 359.97438 * 5 4 3 21 21 C 1.38215 * 120.26668 * 0.02562 * 20 5 4 22 22 C 1.38101 * 120.20386 * 0.02562 * 21 20 5 23 23 Br 1.89103 * 120.03726 * 179.97438 * 22 21 20 24 24 H 1.07994 * 120.09948 * 0.25513 * 4 3 2 25 25 H 1.08993 * 109.47632 * 300.00394 * 7 6 5 26 26 H 1.09003 * 109.46902 * 60.00373 * 7 6 5 27 27 H 0.97007 * 119.99939 * 0.02562 * 10 8 7 28 28 H 1.08993 * 109.47130 * 300.00436 * 11 10 8 29 29 H 1.09003 * 109.46947 * 60.00135 * 11 10 8 30 30 H 0.96994 * 119.99665 * 179.97438 * 15 14 12 31 31 H 1.08007 * 119.86382 * 179.97438 * 20 5 4 32 32 H 1.08001 * 119.89937 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.7339 0.9581 5 6 4.6531 -0.7234 0.9555 6 8 5.3393 -1.4368 1.8870 7 6 6.7658 -1.3813 1.8254 8 6 7.3496 -2.2275 2.9274 9 8 6.6161 -2.8201 3.6901 10 7 8.6866 -2.3256 3.0654 11 6 9.2541 -3.1486 4.1363 12 6 10.7586 -3.0900 4.0714 13 1 11.2435 -2.4985 3.3089 14 6 11.5159 -3.7907 4.9860 15 7 12.8289 -3.7391 4.9297 16 14 10.6771 -4.8132 6.3052 17 1 10.4616 -6.1927 5.7998 18 1 11.5347 -4.8581 7.5167 19 1 9.3680 -4.2013 6.6479 20 6 5.3415 0.0154 0.0021 21 6 4.6500 0.7435 -0.9477 22 6 3.2690 0.7417 -0.9546 23 35 2.3277 1.7402 -2.2558 24 1 2.7332 -1.3079 1.6994 25 1 7.1029 -1.7594 0.8602 26 1 7.0948 -0.3492 1.9462 27 1 9.2733 -1.8514 2.4555 28 1 8.9167 -2.7717 5.1017 29 1 8.9255 -4.1808 4.0143 30 1 13.3616 -4.2317 5.5733 31 1 6.4215 0.0216 0.0033 32 1 5.1913 1.3156 -1.6867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901712466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:15 Heat of formation + Delta-G solvation = -12.626055 kcal Electronic energy + Delta-G solvation = -19159.678310 eV Core-core repulsion = 15746.429123 eV Total energy + Delta-G solvation = -3413.249186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85931 -39.25961 -38.02465 -36.58045 -34.49441 -32.57183 -32.44734 -32.03965 -30.06249 -28.85611 -27.13856 -24.54898 -22.90240 -22.20571 -20.31906 -19.76324 -17.88907 -17.21491 -16.65278 -16.57631 -16.44427 -15.75534 -15.24113 -14.80626 -14.64415 -14.28697 -14.22503 -13.81604 -13.49912 -13.09378 -13.02079 -12.86111 -12.47178 -12.43747 -12.39133 -11.75381 -11.68975 -11.13044 -10.86076 -10.77748 -10.76882 -10.06033 -9.67030 -9.62126 -9.46911 -8.88669 -8.70950 -8.37158 -6.30598 -4.34188 0.07197 0.61410 1.05403 2.13501 2.43293 2.50273 2.89176 3.20810 3.23787 3.28034 3.35288 3.35979 3.90868 4.09354 4.25322 4.33308 4.53967 4.72335 4.75266 4.89323 5.04855 5.06288 5.19811 5.24332 5.48675 5.63300 5.80716 6.63221 6.80802 6.93014 7.00220 7.02046 7.23968 7.95350 8.31917 8.58252 8.70741 9.28339 10.81028 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.001990 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.755420 B =14070.363217 C =14827.669422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.249 3.751 3 C 0.042 3.958 4 C -0.098 4.098 5 C 0.155 3.845 6 O -0.278 6.278 7 C 0.036 3.964 8 C 0.502 3.498 9 O -0.533 6.533 10 N -0.698 5.698 11 C 0.222 3.778 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.890 5.890 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.179 4.179 21 C -0.045 4.045 22 C -0.097 4.097 23 Br -0.036 7.036 24 H 0.154 0.846 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.399 0.601 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.269 0.731 31 H 0.149 0.851 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 12.573 -16.410 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.068 4.068 3 C 0.036 3.964 4 C -0.120 4.120 5 C 0.107 3.893 6 O -0.189 6.189 7 C -0.042 4.042 8 C 0.285 3.715 9 O -0.410 6.410 10 N -0.349 5.349 11 C 0.100 3.900 12 C -0.585 4.585 13 H 0.099 0.901 14 C -0.125 4.125 15 N -0.526 5.526 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.199 4.199 21 C -0.064 4.064 22 C -0.179 4.179 23 Br 0.050 6.950 24 H 0.171 0.829 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.233 0.767 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.590 12.311 -16.071 28.171 hybrid contribution 0.974 -0.440 0.534 1.195 sum -18.616 11.871 -15.537 26.997 Atomic orbital electron populations 1.81240 1.11528 1.06797 1.06666 1.25261 0.92283 0.94657 0.94555 1.15407 0.84652 0.99604 0.96712 1.20386 0.91317 1.00825 0.99472 1.18895 0.91386 0.90575 0.88422 1.86244 1.19084 1.64588 1.48952 1.22749 0.78992 1.01969 1.00534 1.19837 0.83601 0.82695 0.85416 1.90729 1.59488 1.46278 1.44549 1.46060 1.04567 1.49817 1.34444 1.19566 0.94403 0.90258 0.85737 1.21040 0.88066 1.32136 1.17273 0.90124 1.24789 0.94717 0.95831 0.97203 1.69869 1.04426 1.41733 1.36621 0.86825 0.80218 0.81207 0.81507 1.19765 1.20809 1.18457 1.21594 1.01549 1.00224 0.96583 1.20857 0.91056 0.96820 0.97704 1.21683 0.94938 1.03153 0.98162 1.96796 1.75174 1.70873 1.52164 0.82875 0.88572 0.88569 0.76746 0.95387 0.95844 0.92127 0.83320 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.72 18.54 41.84 0.78 -3.95 16 2 C 0.25 2.57 14.19 -22.47 -0.32 2.25 16 3 C 0.04 0.36 5.73 -106.91 -0.61 -0.25 16 4 C -0.10 -0.86 9.69 -39.01 -0.38 -1.24 16 5 C 0.15 1.40 6.68 -39.28 -0.26 1.13 16 6 O -0.28 -3.32 9.67 -39.41 -0.38 -3.70 16 7 C 0.04 0.38 5.22 36.01 0.19 0.57 16 8 C 0.50 8.34 7.91 -10.99 -0.09 8.25 16 9 O -0.53 -11.43 16.50 -14.36 -0.24 -11.66 16 10 N -0.70 -12.32 5.55 -61.47 -0.34 -12.66 16 11 C 0.22 5.05 4.50 -5.19 -0.02 5.03 16 12 C -0.55 -14.08 9.83 -34.44 -0.34 -14.42 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 16 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 20 C -0.18 -1.17 9.03 -39.35 -0.36 -1.52 16 21 C -0.04 -0.27 9.77 -39.64 -0.39 -0.66 16 22 C -0.10 -0.75 6.25 -39.08 -0.24 -1.00 16 23 Br -0.04 -0.28 32.62 -68.01 -2.22 -2.50 16 24 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 25 H 0.10 0.71 7.66 -51.93 -0.40 0.31 16 26 H 0.10 0.71 7.65 -51.93 -0.40 0.31 16 27 H 0.40 5.78 8.32 -40.82 -0.34 5.44 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 29 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.15 0.62 6.28 -52.48 -0.33 0.29 16 32 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -32.48 316.26 -7.10 -39.58 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -2.65 Total: -1.32 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.92 Total: 0.18 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 1.21 Total: -41.20 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.62 Total: -15.37 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.22 Total: -2.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.48 -7.10 -39.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901712466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.955 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds