Wall clock time and date at job start Tue Mar 31 2020 20:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39610 * 120.13279 * 307.48725 * 3 2 1 5 5 C 1.38403 * 119.79907 * 180.29791 * 4 3 2 6 6 O 1.35925 * 119.96973 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00054 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47226 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99431 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00458 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00393 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47184 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00302 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99903 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99888 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99840 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47085 * 89.99654 * 16 14 12 18 18 H 1.48499 * 109.46918 * 209.99817 * 16 14 12 19 19 H 1.48506 * 109.46962 * 329.99540 * 16 14 12 20 20 C 1.38875 * 120.06323 * 359.97438 * 5 4 3 21 21 C 1.38215 * 120.26668 * 0.02562 * 20 5 4 22 22 C 1.38101 * 120.20386 * 0.02562 * 21 20 5 23 23 Br 1.89103 * 120.03726 * 179.97438 * 22 21 20 24 24 H 1.07994 * 120.09948 * 0.25513 * 4 3 2 25 25 H 1.08993 * 109.47632 * 300.00394 * 7 6 5 26 26 H 1.09003 * 109.46902 * 60.00373 * 7 6 5 27 27 H 0.97007 * 119.99939 * 0.02562 * 10 8 7 28 28 H 1.08993 * 109.47130 * 300.00436 * 11 10 8 29 29 H 1.09003 * 109.46947 * 60.00135 * 11 10 8 30 30 H 0.96994 * 119.99665 * 179.97438 * 15 14 12 31 31 H 1.08007 * 119.86382 * 179.97438 * 20 5 4 32 32 H 1.08001 * 119.89937 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.7339 0.9581 5 6 4.6531 -0.7234 0.9555 6 8 5.3393 -1.4368 1.8870 7 6 6.7658 -1.3813 1.8254 8 6 7.3496 -2.2275 2.9274 9 8 6.6161 -2.8201 3.6901 10 7 8.6866 -2.3256 3.0654 11 6 9.2541 -3.1486 4.1363 12 6 10.7586 -3.0900 4.0714 13 1 11.2435 -2.4985 3.3089 14 6 11.5159 -3.7907 4.9860 15 7 12.8289 -3.7391 4.9297 16 14 10.6771 -4.8132 6.3052 17 1 10.4616 -6.1927 5.7998 18 1 11.5347 -4.8581 7.5167 19 1 9.3680 -4.2013 6.6479 20 6 5.3415 0.0154 0.0021 21 6 4.6500 0.7435 -0.9477 22 6 3.2690 0.7417 -0.9546 23 35 2.3277 1.7402 -2.2558 24 1 2.7332 -1.3079 1.6994 25 1 7.1029 -1.7594 0.8602 26 1 7.0948 -0.3492 1.9462 27 1 9.2733 -1.8514 2.4555 28 1 8.9167 -2.7717 5.1017 29 1 8.9255 -4.1808 4.0143 30 1 13.3616 -4.2317 5.5733 31 1 6.4215 0.0216 0.0033 32 1 5.1913 1.3156 -1.6867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901712466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:14 Heat of formation + Delta-G solvation = -34.155375 kcal Electronic energy + Delta-G solvation = -19160.611891 eV Core-core repulsion = 15746.429123 eV Total energy + Delta-G solvation = -3414.182768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59424 -40.43095 -38.93082 -37.39339 -36.16304 -34.42322 -33.13836 -32.64005 -31.14766 -29.92143 -28.38748 -25.28551 -24.04473 -23.41111 -21.70418 -20.49982 -19.34558 -18.13118 -17.93614 -17.42452 -17.13743 -16.87557 -16.66605 -15.92390 -15.88610 -15.25657 -15.21440 -14.87985 -14.51243 -14.35941 -14.18979 -14.04167 -13.75350 -13.59433 -13.09763 -12.99379 -12.73059 -12.52502 -12.30969 -11.92706 -11.62903 -11.42573 -11.37486 -10.90048 -10.86774 -10.25194 -9.97463 -9.34267 -8.37771 -6.44231 -0.55646 0.04126 0.45688 1.32306 1.34758 1.38632 1.49084 1.62700 1.64866 1.74018 2.29805 2.53722 2.57310 2.91308 2.98234 3.51949 3.71959 3.81980 4.08633 4.13227 4.18093 4.20589 4.58620 4.70022 4.80758 4.94857 5.04564 5.07032 5.26076 5.29164 5.47168 6.06606 6.17931 6.23591 6.57292 6.80399 7.17470 7.37466 8.76465 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.001990 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.755420 B =14070.363217 C =14827.669422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.265 3.735 3 C 0.030 3.970 4 C -0.103 4.103 5 C 0.141 3.859 6 O -0.310 6.310 7 C 0.046 3.954 8 C 0.498 3.502 9 O -0.588 6.588 10 N -0.696 5.696 11 C 0.231 3.769 12 C -0.543 4.543 13 H 0.066 0.934 14 C 0.027 3.973 15 N -0.930 5.930 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.160 4.160 21 C -0.036 4.036 22 C -0.097 4.097 23 Br -0.040 7.040 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.416 0.584 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.272 0.728 31 H 0.182 0.818 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 13.591 -17.784 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.050 4.050 3 C 0.024 3.976 4 C -0.125 4.125 5 C 0.094 3.906 6 O -0.222 6.222 7 C -0.031 4.031 8 C 0.285 3.715 9 O -0.468 6.468 10 N -0.348 5.348 11 C 0.107 3.893 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.184 1.184 20 C -0.180 4.180 21 C -0.056 4.056 22 C -0.179 4.179 23 Br 0.046 6.954 24 H 0.166 0.834 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.252 0.748 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.200 0.800 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.326 13.360 -17.487 29.288 hybrid contribution 0.901 -0.696 0.884 1.441 sum -18.425 12.664 -16.604 27.848 Atomic orbital electron populations 1.81244 1.12687 1.08340 1.08104 1.25551 0.92616 0.93467 0.93374 1.15379 0.83657 1.00860 0.97688 1.20375 0.91797 1.00864 0.99437 1.18948 0.91147 0.91486 0.88978 1.86180 1.19737 1.65833 1.50448 1.22758 0.78544 1.02708 0.99137 1.20878 0.82513 0.82119 0.86005 1.90706 1.60534 1.48592 1.46991 1.45811 1.05735 1.49525 1.33686 1.19125 0.92622 0.90573 0.86952 1.21279 0.89609 1.30922 1.16295 0.91553 1.25552 0.95204 0.97175 0.99394 1.69968 1.05732 1.43238 1.37922 0.85935 0.79198 0.79893 0.79331 1.19169 1.20163 1.18434 1.21922 1.03053 0.98175 0.94843 1.21199 0.90160 0.96316 0.97884 1.21848 0.95802 1.02666 0.97607 1.96812 1.75603 1.70844 1.52140 0.83393 0.84522 0.84531 0.74763 0.96855 0.96964 0.91920 0.80037 0.80470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.59 18.54 19.00 0.35 -10.23 16 2 C 0.27 5.43 14.19 88.33 1.25 6.69 16 3 C 0.03 0.48 5.73 -21.35 -0.12 0.35 16 4 C -0.10 -1.68 9.69 22.64 0.22 -1.46 16 5 C 0.14 2.14 6.68 22.46 0.15 2.29 16 6 O -0.31 -6.62 9.67 -73.66 -0.71 -7.33 16 7 C 0.05 0.77 5.22 71.24 0.37 1.15 16 8 C 0.50 15.61 7.91 87.66 0.69 16.31 16 9 O -0.59 -24.97 16.50 15.99 0.26 -24.71 16 10 N -0.70 -23.34 5.55 -466.79 -2.59 -25.93 16 11 C 0.23 10.39 4.50 85.63 0.38 10.78 16 12 C -0.54 -27.82 9.83 25.60 0.25 -27.57 16 13 H 0.07 3.51 7.84 -2.91 -0.02 3.49 16 14 C 0.03 1.47 5.47 84.66 0.46 1.93 16 15 N -0.93 -53.27 13.96 21.45 0.30 -52.97 16 16 Si 0.93 42.28 27.47 68.60 1.88 44.16 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 20 C -0.16 -1.32 9.03 22.42 0.20 -1.12 16 21 C -0.04 -0.29 9.77 22.23 0.22 -0.07 16 22 C -0.10 -1.27 6.25 22.59 0.14 -1.13 16 23 Br -0.04 -0.56 32.62 -20.37 -0.66 -1.23 16 24 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 25 H 0.14 1.24 7.66 -2.39 -0.02 1.23 16 26 H 0.14 1.25 7.65 -2.39 -0.02 1.23 16 27 H 0.42 10.99 8.32 -92.70 -0.77 10.22 16 28 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 29 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.18 0.30 6.28 -2.91 -0.02 0.28 16 32 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -72.78 316.26 3.42 -69.36 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 0.36 Total: 0.73 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.23 Total: 8.15 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -1.94 Total: -89.13 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.45 Total: -32.04 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.66 Total: -1.23 kcal Total: -72.78 3.42 -69.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901712466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.206 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds