Wall clock time and date at job start Tue Mar 31 2020 20:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47011 * 239.99925 * 3 2 1 5 5 H 1.48495 * 109.47583 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47131 * 120.00359 * 3 2 1 7 7 C 1.37873 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00269 * 185.58173 * 7 2 1 9 9 C 1.50696 * 120.00084 * 5.57900 * 7 2 1 10 10 C 1.53007 * 115.55283 * 279.36997 * 9 7 2 11 11 N 1.46494 * 109.46727 * 297.56199 * 10 9 7 12 12 C 1.34744 * 126.16839 * 93.29244 * 11 10 9 13 13 O 1.21583 * 125.27319 * 359.97438 * 12 11 10 14 14 O 1.34253 * 109.45098 * 179.97438 * 12 11 10 15 15 C 1.35414 * 109.01545 * 0.02562 * 14 12 11 16 16 C 1.38684 * 133.33225 * 179.97438 * 15 14 12 17 17 C 1.38787 * 118.28471 * 179.30118 * 16 15 14 18 18 Br 1.89102 * 120.32985 * 180.22755 * 17 16 15 19 19 C 1.38313 * 119.34476 * 0.63310 * 17 16 15 20 20 N 1.31898 * 121.06874 * 359.59217 * 19 17 16 21 21 C 1.32254 * 121.59016 * 0.02562 * 20 19 17 22 22 C 1.53009 * 117.50018 * 133.66468 * 9 7 2 23 23 C 1.53001 * 59.99875 * 252.50898 * 22 9 7 24 24 H 0.96999 * 119.99886 * 354.96237 * 1 2 3 25 25 H 1.08996 * 109.46606 * 57.56318 * 10 9 7 26 26 H 1.08999 * 109.47303 * 177.56426 * 10 9 7 27 27 H 1.08000 * 120.86066 * 0.02737 * 16 15 14 28 28 H 1.07997 * 119.46598 * 179.58078 * 19 17 16 29 29 H 1.08997 * 117.49418 * 359.97438 * 22 9 7 30 30 H 1.08994 * 117.50314 * 145.02324 * 22 9 7 31 31 H 1.09001 * 117.50143 * 252.51099 * 23 22 9 32 32 H 1.08997 * 117.50108 * 107.48588 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0807 -1.1964 0.0904 9 6 1.2564 -2.4959 -0.1280 10 6 0.6199 -3.0203 1.1608 11 7 1.6683 -3.2956 2.1462 12 6 2.1109 -2.4470 3.0946 13 8 1.7002 -1.3165 3.2722 14 8 3.0757 -3.0432 3.8131 15 6 3.2721 -4.2949 3.3351 16 6 4.1267 -5.3269 3.6926 17 6 4.0549 -6.5165 2.9814 18 35 5.1887 -7.9637 3.4240 19 6 3.1516 -6.6302 1.9401 20 7 2.3538 -5.6302 1.6188 21 6 2.3835 -4.4820 2.2745 22 6 1.7979 -3.5278 -1.1195 23 6 0.5145 -2.7589 -1.4400 24 1 -0.4850 0.8368 0.0738 25 1 -0.0650 -2.2714 1.5585 26 1 0.0713 -3.9378 0.9480 27 1 4.8220 -5.2121 4.5110 28 1 3.0988 -7.5527 1.3810 29 1 2.6950 -3.2648 -1.6799 30 1 1.7008 -4.5804 -0.8538 31 1 -0.4269 -3.3057 -1.3850 32 1 0.5675 -1.9902 -2.2109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902662631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:45 Heat of formation + Delta-G solvation = 35.337483 kcal Electronic energy + Delta-G solvation = -21383.249793 eV Core-core repulsion = 17972.080462 eV Total energy + Delta-G solvation = -3411.169331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.14495 -39.40610 -37.58384 -36.70868 -35.00526 -32.96846 -31.97451 -31.23122 -29.08451 -27.29088 -25.45674 -24.10927 -23.17895 -21.90193 -21.11385 -19.29792 -19.06949 -17.77645 -17.21400 -16.72394 -15.98706 -15.32446 -14.66372 -14.58683 -14.38032 -14.12955 -13.94087 -13.68701 -13.26651 -13.11471 -12.57162 -11.95476 -11.65311 -11.62286 -11.00509 -10.89266 -10.77466 -10.57950 -10.51124 -10.32294 -10.27345 -9.72589 -9.69474 -9.45230 -8.93976 -8.52769 -8.26902 -7.99612 -6.07336 -4.13871 0.63576 0.83318 1.20590 2.28246 2.89804 2.93827 3.33630 3.37246 3.41264 3.41845 4.01575 4.39020 4.42515 4.51161 4.71252 5.15334 5.22286 5.29535 5.47764 5.50952 5.83941 5.95664 6.15468 6.26832 6.34861 6.49419 6.71599 6.82166 6.97243 7.22305 7.37435 7.42139 7.63046 7.84323 8.11762 8.32663 8.84707 9.54762 11.01507 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.003665 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.305853 B = 7638.936740 C = 8166.636722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.085 3.915 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.167 3.833 11 N -0.502 5.502 12 C 0.642 3.358 13 O -0.443 6.443 14 O -0.240 6.240 15 C -0.014 4.014 16 C -0.009 4.009 17 C -0.162 4.162 18 Br -0.026 7.026 19 C 0.164 3.836 20 N -0.457 5.457 21 C 0.324 3.676 22 C -0.203 4.203 23 C -0.148 4.148 24 H 0.263 0.737 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.177 0.823 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -17.766 6.931 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.119 4.119 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.021 3.979 10 C 0.049 3.951 11 N -0.232 5.232 12 C 0.395 3.605 13 O -0.320 6.320 14 O -0.147 6.147 15 C -0.066 4.066 16 C -0.037 4.037 17 C -0.246 4.246 18 Br 0.058 6.942 19 C 0.002 3.998 20 N -0.172 5.172 21 C 0.089 3.911 22 C -0.241 4.241 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.174 0.826 28 H 0.194 0.806 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.943 -17.297 6.607 19.775 hybrid contribution 0.767 1.469 0.461 1.720 sum 7.710 -15.828 7.068 18.972 Atomic orbital electron populations 1.69894 1.05874 1.27178 1.48232 1.24847 0.94750 0.98791 0.93525 0.86711 0.79893 0.83220 0.78635 1.20321 1.21106 1.19992 1.20166 0.92396 0.88451 1.52507 0.92915 1.19122 0.98732 0.94213 0.85863 1.21617 0.85526 1.00010 0.87961 1.46111 1.36165 1.09346 1.31599 1.18331 0.78726 0.84882 0.78573 1.91216 1.58434 1.12789 1.69574 1.85024 1.52267 1.23801 1.53559 1.19579 1.01675 0.86916 0.98397 1.20199 0.96262 0.87992 0.99236 1.22335 1.03660 0.95036 1.03561 1.96732 1.63392 1.40631 1.93411 1.22648 0.88455 0.96368 0.92308 1.66765 1.24495 0.98108 1.27858 1.19017 0.91391 0.89004 0.91687 1.23007 0.97812 0.96139 1.07099 1.22535 0.93058 1.01489 1.01534 0.92753 0.87459 0.91291 0.82584 0.80610 0.90707 0.90582 0.91574 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 13.10 55.43 0.73 -23.67 16 2 C 0.09 2.35 5.42 -17.82 -0.10 2.25 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.50 -13.43 8.44 -34.44 -0.29 -13.72 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.52 1.51 -155.65 -0.23 0.28 16 10 C 0.17 3.61 5.91 -4.04 -0.02 3.59 16 11 N -0.50 -10.26 2.67 -120.85 -0.32 -10.58 16 12 C 0.64 13.91 8.82 54.04 0.48 14.39 16 13 O -0.44 -11.12 17.76 -18.99 -0.34 -11.46 16 14 O -0.24 -4.45 10.73 -21.61 -0.23 -4.68 16 15 C -0.01 -0.22 7.37 -38.90 -0.29 -0.51 16 16 C -0.01 -0.11 9.95 -39.21 -0.39 -0.50 16 17 C -0.16 -1.75 6.25 -39.35 -0.25 -2.00 16 18 Br -0.03 -0.22 33.73 -68.01 -2.29 -2.51 16 19 C 0.16 1.90 10.92 -17.50 -0.19 1.71 16 20 N -0.46 -7.00 10.39 -12.26 -0.13 -7.13 16 21 C 0.32 5.64 7.98 -154.84 -1.23 4.41 16 22 C -0.20 -4.28 9.95 -26.73 -0.27 -4.54 16 23 C -0.15 -3.28 9.68 -26.73 -0.26 -3.54 16 24 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 25 H 0.11 2.57 8.00 -51.93 -0.42 2.16 16 26 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 27 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -29.46 312.35 -8.86 -38.32 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.92 Total: -1.71 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -3.04 Total: 1.82 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.28 Total: -41.38 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.57 Total: -16.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.29 Total: -2.51 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.46 -8.86 -38.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902662631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.657 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds