Wall clock time and date at job start Tue Mar 31 2020 20:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21267 * 119.99837 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.38445 * 119.99866 * 180.02562 * 13 11 10 15 15 N 1.30858 * 125.05825 * 180.02562 * 14 13 11 16 16 C 1.35722 * 109.48008 * 180.02562 * 15 14 13 17 17 C 1.39808 * 133.72683 * 179.97438 * 16 15 14 18 18 C 1.38310 * 118.15922 * 179.97438 * 17 16 15 19 19 Br 1.89104 * 120.23865 * 179.97438 * 18 17 16 20 20 C 1.38629 * 119.52612 * 0.02562 * 18 17 16 21 21 N 1.31749 * 121.32858 * 0.02562 * 20 18 17 22 22 C 1.32280 * 121.61458 * 359.97438 * 21 20 18 23 23 N 1.36583 * 125.05696 * 359.72775 * 14 13 11 24 24 H 0.97000 * 126.29738 * 359.97438 * 23 14 13 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 31 31 H 1.07996 * 120.91659 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.33509 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5866 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.5868 -3.8040 -0.0003 15 7 8.3384 -4.8752 -0.0013 16 6 9.6458 -4.5108 0.0002 17 6 10.8479 -5.2245 0.0005 18 6 12.0317 -4.5092 0.0016 19 35 13.6917 -5.4149 0.0028 20 6 11.9926 -3.1235 0.0030 21 7 10.8483 -2.4705 0.0038 22 6 9.6877 -3.1052 0.0027 23 7 8.3713 -2.6860 -0.0045 24 1 8.0612 -1.7670 -0.0086 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6578 -3.1508 0.8896 30 1 5.7173 -4.6439 -0.0016 31 1 10.8521 -6.3045 -0.0002 32 1 12.9187 -2.5680 0.0044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908464460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:00 Heat of formation + Delta-G solvation = 53.429392 kcal Electronic energy + Delta-G solvation = -19708.850754 eV Core-core repulsion = 16330.758698 eV Total energy + Delta-G solvation = -3378.092056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.78310 -40.28804 -38.54213 -35.08174 -34.12064 -33.80436 -32.44526 -31.57821 -30.54981 -28.97434 -26.74996 -24.18075 -23.31397 -22.20072 -21.47384 -20.35018 -19.11795 -18.00978 -17.45962 -16.86027 -16.51019 -16.20167 -16.15406 -15.43044 -14.87857 -14.31719 -13.99728 -13.72244 -13.63533 -13.11822 -12.96084 -12.74997 -11.99230 -11.69338 -11.39014 -11.17877 -11.06220 -10.77107 -10.70598 -10.55938 -10.34187 -10.12693 -9.85755 -9.60764 -9.39442 -9.07415 -8.66526 -8.36851 -6.17834 -4.18805 0.37641 0.67395 1.12801 1.82391 1.95451 2.67888 2.78304 3.25764 3.33799 3.34396 3.40448 3.96079 4.19570 4.32794 4.35946 4.43218 4.74725 4.83513 5.16730 5.29542 5.42581 5.54873 5.64458 5.70721 5.75239 5.96807 6.29592 6.65891 6.94886 7.07247 7.14414 7.47102 7.48826 7.55512 7.73542 8.33542 8.83474 9.43497 10.94548 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.047665 B = 0.002029 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.297296 B =13796.124265 C =14362.973490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.116 4.116 11 C 0.522 3.478 12 O -0.519 6.519 13 N -0.635 5.635 14 C 0.541 3.459 15 N -0.513 5.513 16 C 0.035 3.965 17 C 0.003 3.997 18 C -0.154 4.154 19 Br -0.030 7.030 20 C 0.156 3.844 21 N -0.463 5.463 22 C 0.250 3.750 23 N -0.574 5.574 24 H 0.444 0.556 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.438 0.562 31 H 0.152 0.848 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.875 -13.167 0.028 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.094 0.906 9 C -0.038 4.038 10 C -0.155 4.155 11 C 0.313 3.687 12 O -0.391 6.391 13 N -0.289 5.289 14 C 0.184 3.816 15 N -0.242 5.242 16 C -0.088 4.088 17 C -0.027 4.027 18 C -0.238 4.238 19 Br 0.055 6.945 20 C -0.013 4.013 21 N -0.176 5.176 22 C 0.012 3.988 23 N -0.201 5.201 24 H 0.294 0.706 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.279 0.721 31 H 0.170 0.830 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 27.254 -12.470 0.029 29.971 hybrid contribution -0.201 1.016 -0.024 1.036 sum 27.053 -11.454 0.005 29.378 Atomic orbital electron populations 1.69895 1.06292 1.27205 1.50185 1.24967 0.94734 0.99249 0.94133 0.86804 0.80519 0.83452 0.78788 1.20161 1.21267 1.18669 1.21002 0.88775 0.94792 1.52318 0.90643 1.19441 0.97057 0.89278 0.98014 1.21806 0.84276 1.04594 1.04859 1.22376 0.92811 0.81069 0.72456 1.90478 1.69808 1.31335 1.47513 1.43266 0.99886 1.12898 1.72823 1.19535 0.85243 0.81990 0.94797 1.70601 1.00019 1.24586 1.29017 1.19347 0.92130 0.91359 1.05996 1.20532 0.87288 1.00664 0.94195 1.22483 0.92615 0.96016 1.12724 1.96741 1.23048 1.76906 1.97850 1.22531 0.94805 0.89308 0.94693 1.66479 0.95656 1.40114 1.15302 1.18888 0.85889 0.91020 1.02996 1.43290 1.02911 1.11324 1.62621 0.70613 0.92491 0.95541 0.95978 0.88016 0.87981 0.72082 0.82989 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -13.97 9.66 -34.44 -0.33 -14.31 16 8 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.00 0.00 3.33 -27.89 -0.09 -0.09 16 10 C -0.12 -1.81 5.64 -27.88 -0.16 -1.97 16 11 C 0.52 7.64 7.79 -10.98 -0.09 7.55 16 12 O -0.52 -9.16 13.39 5.57 0.07 -9.08 16 13 N -0.63 -7.40 5.38 -12.58 -0.07 -7.47 16 14 C 0.54 7.36 8.71 -319.34 -2.78 4.57 16 15 N -0.51 -6.97 11.31 -11.37 -0.13 -7.10 16 16 C 0.03 0.46 7.24 -84.66 -0.61 -0.16 16 17 C 0.00 0.03 9.97 -38.97 -0.39 -0.36 16 18 C -0.15 -1.45 6.24 -39.41 -0.25 -1.69 16 19 Br -0.03 -0.22 33.72 -68.01 -2.29 -2.51 16 20 C 0.16 1.56 10.91 -17.44 -0.19 1.37 16 21 N -0.46 -6.03 10.38 -12.19 -0.13 -6.16 16 22 C 0.25 3.52 8.45 -155.38 -1.31 2.20 16 23 N -0.57 -8.26 5.82 -12.56 -0.07 -8.33 16 24 H 0.44 6.63 6.33 -40.82 -0.26 6.38 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.61 7.16 -51.93 -0.37 0.23 16 27 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 28 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.44 3.63 8.82 -40.82 -0.36 3.27 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -31.61 304.14 -10.88 -42.50 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.66 Total: 3.74 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -6.30 Total: -0.98 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.38 Total: -54.81 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.29 Total: -2.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.61 -10.88 -42.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908464460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.926 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds