Wall clock time and date at job start Tue Mar 31 2020 20:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21267 * 119.99837 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.38445 * 119.99866 * 180.02562 * 13 11 10 15 15 N 1.30858 * 125.05825 * 180.02562 * 14 13 11 16 16 C 1.35722 * 109.48008 * 180.02562 * 15 14 13 17 17 C 1.39808 * 133.72683 * 179.97438 * 16 15 14 18 18 C 1.38310 * 118.15922 * 179.97438 * 17 16 15 19 19 Br 1.89104 * 120.23865 * 179.97438 * 18 17 16 20 20 C 1.38629 * 119.52612 * 0.02562 * 18 17 16 21 21 N 1.31749 * 121.32858 * 0.02562 * 20 18 17 22 22 C 1.32280 * 121.61458 * 359.97438 * 21 20 18 23 23 N 1.36583 * 125.05696 * 359.72775 * 14 13 11 24 24 H 0.97000 * 126.29738 * 359.97438 * 23 14 13 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 31 31 H 1.07996 * 120.91659 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.33509 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5866 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.5868 -3.8040 -0.0003 15 7 8.3384 -4.8752 -0.0013 16 6 9.6458 -4.5108 0.0002 17 6 10.8479 -5.2245 0.0005 18 6 12.0317 -4.5092 0.0016 19 35 13.6917 -5.4149 0.0028 20 6 11.9926 -3.1235 0.0030 21 7 10.8483 -2.4705 0.0038 22 6 9.6877 -3.1052 0.0027 23 7 8.3713 -2.6860 -0.0045 24 1 8.0612 -1.7670 -0.0086 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6578 -3.1508 0.8896 30 1 5.7173 -4.6439 -0.0016 31 1 10.8521 -6.3045 -0.0002 32 1 12.9187 -2.5680 0.0044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908464460.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:59 Heat of formation + Delta-G solvation = 34.389409 kcal Electronic energy + Delta-G solvation = -19709.676389 eV Core-core repulsion = 16330.758698 eV Total energy + Delta-G solvation = -3378.917692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.74735 -41.39743 -39.49607 -36.15443 -35.65697 -34.99798 -33.50990 -33.18928 -31.42557 -29.89688 -28.32877 -25.33281 -24.23951 -23.47750 -22.61054 -21.71446 -20.11501 -19.33605 -18.77952 -18.02820 -17.55824 -17.46648 -17.06943 -16.57923 -16.25710 -15.73934 -15.38677 -14.86637 -14.70320 -14.46133 -14.21304 -13.88643 -13.48237 -12.96029 -12.86722 -12.37440 -12.21228 -12.03732 -11.99533 -11.80252 -11.58807 -11.47433 -11.44231 -11.35032 -10.78133 -10.51336 -9.91857 -9.31905 -8.31170 -6.34327 -0.50930 -0.19736 0.38350 0.84577 0.87800 1.33544 1.37130 1.48443 1.65585 1.74334 2.33935 2.45093 3.03496 3.05234 3.29557 3.41399 3.63294 3.67464 3.98810 4.28446 4.37952 4.42968 4.50288 4.67506 4.87529 4.91520 5.08572 5.32265 5.40281 5.59585 5.69942 5.94184 6.22208 6.47996 6.56658 6.63566 6.76098 7.31056 8.84144 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.047665 B = 0.002029 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.297296 B =13796.124265 C =14362.973490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.000 4.000 10 C -0.107 4.107 11 C 0.533 3.467 12 O -0.552 6.552 13 N -0.613 5.613 14 C 0.527 3.473 15 N -0.512 5.512 16 C 0.013 3.987 17 C 0.009 3.991 18 C -0.150 4.150 19 Br -0.003 7.003 20 C 0.163 3.837 21 N -0.488 5.488 22 C 0.229 3.771 23 N -0.582 5.582 24 H 0.439 0.561 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.454 0.546 31 H 0.173 0.827 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.444 -14.260 0.006 32.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.038 4.038 10 C -0.147 4.147 11 C 0.323 3.677 12 O -0.426 6.426 13 N -0.269 5.269 14 C 0.170 3.830 15 N -0.242 5.242 16 C -0.109 4.109 17 C -0.021 4.021 18 C -0.235 4.235 19 Br 0.081 6.919 20 C -0.006 4.006 21 N -0.201 5.201 22 C -0.008 4.008 23 N -0.208 5.208 24 H 0.287 0.713 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.298 0.702 31 H 0.190 0.810 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 29.844 -13.626 0.006 32.808 hybrid contribution -0.817 1.226 -0.017 1.473 sum 29.027 -12.400 -0.011 31.565 Atomic orbital electron populations 1.70019 1.07856 1.28033 1.52455 1.25799 0.95433 1.02833 0.94472 0.85867 0.79394 0.79674 0.78978 1.19607 1.21022 1.18036 1.21396 0.91151 0.93791 1.50178 0.92640 1.19305 0.94128 0.93320 0.97062 1.21586 0.85087 1.00909 1.07080 1.21957 0.92272 0.81271 0.72155 1.90483 1.70254 1.32711 1.49200 1.42856 0.99376 1.12767 1.71854 1.19620 0.85540 0.81985 0.95859 1.70559 1.00377 1.24505 1.28747 1.19651 0.92632 0.91404 1.07216 1.20835 0.86651 1.01680 0.92914 1.22625 0.93467 0.96029 1.11336 1.96784 1.21059 1.76354 1.97707 1.23116 0.94906 0.89977 0.92596 1.66522 0.96075 1.40979 1.16544 1.19122 0.86053 0.91613 1.04031 1.43320 1.03441 1.11209 1.62861 0.71253 0.92477 0.96549 0.96667 0.85865 0.85877 0.70154 0.80969 0.78022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 13.96 21.45 0.30 -56.43 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 44.06 27.47 68.60 1.88 45.95 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.53 -27.82 9.66 25.60 0.25 -27.57 16 8 H 0.06 3.08 7.99 -2.91 -0.02 3.05 16 9 C 0.00 0.00 3.33 29.85 0.10 0.09 16 10 C -0.11 -3.18 5.64 29.85 0.17 -3.01 16 11 C 0.53 14.93 7.79 87.66 0.68 15.61 16 12 O -0.55 -19.22 13.39 -2.99 -0.04 -19.26 16 13 N -0.61 -13.42 5.38 -312.10 -1.68 -15.10 16 14 C 0.53 13.89 8.71 260.27 2.27 16.15 16 15 N -0.51 -13.35 11.31 -189.89 -2.15 -15.50 16 16 C 0.01 0.34 7.24 39.50 0.29 0.62 16 17 C 0.01 0.16 9.97 22.67 0.23 0.39 16 18 C -0.15 -2.47 6.24 22.38 0.14 -2.33 16 19 Br 0.00 -0.04 33.72 -20.37 -0.69 -0.73 16 20 C 0.16 2.93 10.91 84.80 0.93 3.85 16 21 N -0.49 -12.26 10.38 -192.49 -2.00 -14.26 16 22 C 0.23 6.31 8.45 133.75 1.13 7.44 16 23 N -0.58 -16.67 5.82 -193.64 -1.13 -17.80 16 24 H 0.44 13.30 6.33 -92.71 -0.59 12.71 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.02 0.73 7.16 -2.39 -0.02 0.72 16 27 H 0.01 0.67 7.53 -2.38 -0.02 0.65 16 28 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.45 6.59 8.82 -92.71 -0.82 5.78 16 31 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -68.70 304.14 0.88 -67.82 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.25 Total: 12.89 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.64 Total: 12.42 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -6.65 Total: -119.09 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.69 Total: -0.73 kcal Total: -68.70 0.88 -67.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908464460.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.209 kcal (2) G-P(sol) polarization free energy of solvation -68.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds