Wall clock time and date at job start Tue Mar 31 2020 20:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34786 * 117.00165 * 2 1 4 4 O 1.21509 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.47365 * 119.99951 * 180.02562 * 3 2 1 6 6 N 1.29926 * 125.22666 * 180.02562 * 5 3 2 7 7 C 1.31763 * 116.09053 * 180.02562 * 6 5 3 8 8 C 1.47517 * 122.55215 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99678 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99780 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99626 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47243 * 324.99921 * 11 10 8 13 13 C 1.50694 * 109.46880 * 204.99620 * 11 10 8 14 14 H 1.07997 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99785 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00470 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00105 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47096 * 89.99879 * 17 15 13 19 19 H 1.48500 * 109.46996 * 209.99781 * 17 15 13 20 20 H 1.48503 * 109.47032 * 329.99865 * 17 15 13 21 21 C 1.53000 * 109.46814 * 84.99944 * 11 10 8 22 22 F 1.39896 * 109.47366 * 60.00080 * 21 11 10 23 23 F 1.39902 * 109.46908 * 179.97438 * 21 11 10 24 24 F 1.39898 * 109.47519 * 299.99688 * 21 11 10 25 25 C 1.36870 * 114.89398 * 359.97438 * 7 6 5 26 26 S 1.71035 * 108.89455 * 0.02562 * 25 7 6 27 27 H 1.08997 * 109.47740 * 59.99083 * 1 2 3 28 28 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46856 * 299.99450 * 1 2 3 30 30 H 0.97002 * 120.00381 * 359.97438 * 10 8 7 31 31 H 0.97003 * 120.00487 * 179.97438 * 16 15 13 32 32 H 1.08007 * 125.55232 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4022 2.2200 0.0005 5 6 3.5355 1.2780 -0.0006 6 7 4.2284 2.3771 -0.0001 7 6 5.5385 2.2362 -0.0013 8 6 6.4606 3.3876 -0.0016 9 8 7.6626 3.2038 -0.0032 10 7 5.9708 4.6432 -0.0001 11 6 6.8866 5.7867 0.0002 12 1 7.7713 5.5435 0.5888 13 6 6.1960 6.9832 0.6022 14 1 5.1770 6.9001 0.9501 15 6 6.8651 8.1840 0.7087 16 7 8.1062 8.2852 0.2854 17 14 6.0093 9.6671 1.4555 18 1 6.2463 9.6891 2.9213 19 1 6.5508 10.9091 0.8478 20 1 4.5505 9.5819 1.1912 21 6 7.3024 6.1074 -1.4369 22 9 6.1671 6.4195 -2.1923 23 9 8.1766 7.1997 -1.4367 24 9 7.9436 4.9966 -1.9958 25 6 5.9786 0.9402 -0.0023 26 16 4.6244 -0.1046 -0.0023 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 5.0119 4.7898 0.0008 31 1 8.5768 9.1301 0.3600 32 1 7.0126 0.6281 -0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:36 Heat of formation + Delta-G solvation = -199.075064 kcal Electronic energy + Delta-G solvation = -27088.527106 eV Core-core repulsion = 22341.807535 eV Total energy + Delta-G solvation = -4746.719570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.35119 -46.00448 -45.61239 -40.88789 -40.11745 -38.26324 -36.71127 -34.76275 -32.58615 -31.19006 -28.71583 -28.57498 -26.30705 -24.63157 -24.00897 -21.55798 -20.67619 -19.75520 -19.28456 -17.58192 -17.28004 -17.18368 -16.87065 -16.78561 -16.61346 -16.48398 -15.51630 -15.18237 -14.91070 -14.69395 -14.17910 -13.82098 -13.73264 -13.27473 -13.10036 -12.91645 -12.57315 -12.51952 -12.40531 -12.27818 -12.15084 -11.97448 -11.81511 -11.22700 -11.21262 -11.18153 -10.83304 -10.82512 -10.41802 -10.18904 -10.07269 -9.67522 -9.62656 -9.22725 -8.71656 -8.31706 -6.23150 -4.46617 -0.19086 0.77300 1.20158 1.47135 1.92639 2.47159 3.21088 3.27596 3.31580 3.60063 3.67444 4.13378 4.24324 4.47144 4.56643 4.73862 4.83783 4.93353 4.93926 5.06061 5.16635 5.58820 5.80840 5.83629 5.86476 6.20543 6.86567 6.94829 7.12829 7.34152 7.47400 7.63557 8.24970 8.49074 8.73224 9.20936 10.68611 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003545 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.170895 B = 7897.665048 C = 8933.320011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.353 6.353 3 C 0.547 3.453 4 O -0.461 6.461 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.020 3.980 8 C 0.582 3.418 9 O -0.526 6.526 10 N -0.688 5.688 11 C 0.243 3.757 12 H 0.088 0.912 13 C -0.551 4.551 14 H 0.080 0.920 15 C 0.066 3.934 16 N -0.840 5.840 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.417 3.583 22 F -0.207 7.207 23 F -0.135 7.135 24 F -0.218 7.218 25 C -0.196 4.196 26 S 0.257 5.743 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.410 0.590 31 H 0.268 0.732 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 -18.220 -0.083 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.270 6.270 3 C 0.385 3.615 4 O -0.344 6.344 5 C -0.287 4.287 6 N -0.082 5.082 7 C -0.120 4.120 8 C 0.364 3.636 9 O -0.403 6.403 10 N -0.337 5.337 11 C 0.138 3.862 12 H 0.106 0.894 13 C -0.588 4.588 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.474 5.474 17 Si 0.743 3.257 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.361 3.639 22 F -0.189 7.189 23 F -0.116 7.116 24 F -0.200 7.200 25 C -0.338 4.338 26 S 0.511 5.489 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.246 0.754 31 H 0.079 0.921 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.986 -18.452 -0.136 20.981 hybrid contribution -0.284 1.734 -0.026 1.757 sum -10.270 -16.719 -0.162 19.621 Atomic orbital electron populations 1.23395 0.74482 1.04248 1.03264 1.86495 1.24527 1.31204 1.84758 1.19228 0.85680 0.82283 0.74324 1.90947 1.64924 1.35730 1.42815 1.25624 0.96038 0.92012 1.15023 1.66364 1.05173 1.28664 1.08029 1.20825 0.88355 0.94758 1.08103 1.17101 0.86589 0.82208 0.77745 1.90820 1.13841 1.85080 1.50542 1.45972 1.11753 1.04575 1.71379 1.19842 0.93178 0.85073 0.88087 0.89409 1.20897 1.00908 0.93413 1.43613 0.90221 1.25075 0.95237 0.99382 0.94630 1.70395 1.09982 1.26761 1.40229 0.86188 0.79778 0.80676 0.79106 1.20160 1.20773 1.19394 1.23110 0.74820 0.74619 0.91373 1.93002 1.53013 1.93335 1.79555 1.93412 1.69351 1.52728 1.96129 1.93063 1.83181 1.55434 1.88341 1.27517 1.07143 0.96387 1.02778 1.83868 0.94274 1.09445 1.61278 0.91302 0.87391 0.91293 0.75434 0.92087 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.27 10.42 -40.73 -0.42 -3.70 16 3 C 0.55 6.91 7.96 34.44 0.27 7.19 16 4 O -0.46 -7.22 16.85 -19.27 -0.32 -7.54 16 5 C -0.01 -0.17 7.43 -14.65 -0.11 -0.28 16 6 N -0.36 -5.90 9.96 -7.97 -0.08 -5.97 16 7 C 0.02 0.32 6.69 -84.61 -0.57 -0.24 16 8 C 0.58 12.01 7.34 -12.48 -0.09 11.92 16 9 O -0.53 -12.04 15.26 5.28 0.08 -11.96 16 10 N -0.69 -15.19 4.98 -55.98 -0.28 -15.47 16 11 C 0.24 6.20 2.21 -69.08 -0.15 6.05 16 12 H 0.09 2.43 7.58 -51.93 -0.39 2.04 16 13 C -0.55 -14.48 8.46 -34.44 -0.29 -14.77 16 14 H 0.08 2.02 7.74 -52.49 -0.41 1.61 16 15 C 0.07 1.73 5.20 -17.82 -0.09 1.64 16 16 N -0.84 -23.18 9.50 55.43 0.53 -22.65 16 17 Si 0.92 20.53 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.42 10.91 2.81 37.16 0.10 11.01 16 22 F -0.21 -5.31 16.94 2.25 0.04 -5.27 16 23 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 24 F -0.22 -5.58 15.67 2.25 0.04 -5.55 16 25 C -0.20 -2.39 10.66 30.24 0.32 -2.07 16 26 S 0.26 2.35 23.02 -107.50 -2.47 -0.12 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.41 8.57 8.03 -40.82 -0.33 8.24 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.20 2.11 8.03 -52.48 -0.42 1.69 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -32.36 319.80 -4.56 -36.92 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -1.95 Total: 2.98 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 0.47 Total: 21.75 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.17 Total: -44.10 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.67 Total: -23.20 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 0.10 Total: -14.56 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.47 Total: -0.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.36 -4.56 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.157 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds