Wall clock time and date at job start Tue Mar 31 2020 20:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34786 * 117.00165 * 2 1 4 4 O 1.21509 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.47365 * 119.99951 * 180.02562 * 3 2 1 6 6 N 1.29926 * 125.22666 * 180.02562 * 5 3 2 7 7 C 1.31763 * 116.09053 * 180.02562 * 6 5 3 8 8 C 1.47517 * 122.55215 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99678 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99780 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99626 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47243 * 324.99921 * 11 10 8 13 13 C 1.50694 * 109.46880 * 204.99620 * 11 10 8 14 14 H 1.07997 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99785 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00470 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00105 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47096 * 89.99879 * 17 15 13 19 19 H 1.48500 * 109.46996 * 209.99781 * 17 15 13 20 20 H 1.48503 * 109.47032 * 329.99865 * 17 15 13 21 21 C 1.53000 * 109.46814 * 84.99944 * 11 10 8 22 22 F 1.39896 * 109.47366 * 60.00080 * 21 11 10 23 23 F 1.39902 * 109.46908 * 179.97438 * 21 11 10 24 24 F 1.39898 * 109.47519 * 299.99688 * 21 11 10 25 25 C 1.36870 * 114.89398 * 359.97438 * 7 6 5 26 26 S 1.71035 * 108.89455 * 0.02562 * 25 7 6 27 27 H 1.08997 * 109.47740 * 59.99083 * 1 2 3 28 28 H 1.09002 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46856 * 299.99450 * 1 2 3 30 30 H 0.97002 * 120.00381 * 359.97438 * 10 8 7 31 31 H 0.97003 * 120.00487 * 179.97438 * 16 15 13 32 32 H 1.08007 * 125.55232 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4022 2.2200 0.0005 5 6 3.5355 1.2780 -0.0006 6 7 4.2284 2.3771 -0.0001 7 6 5.5385 2.2362 -0.0013 8 6 6.4606 3.3876 -0.0016 9 8 7.6626 3.2038 -0.0032 10 7 5.9708 4.6432 -0.0001 11 6 6.8866 5.7867 0.0002 12 1 7.7713 5.5435 0.5888 13 6 6.1960 6.9832 0.6022 14 1 5.1770 6.9001 0.9501 15 6 6.8651 8.1840 0.7087 16 7 8.1062 8.2852 0.2854 17 14 6.0093 9.6671 1.4555 18 1 6.2463 9.6891 2.9213 19 1 6.5508 10.9091 0.8478 20 1 4.5505 9.5819 1.1912 21 6 7.3024 6.1074 -1.4369 22 9 6.1671 6.4195 -2.1923 23 9 8.1766 7.1997 -1.4367 24 9 7.9436 4.9966 -1.9958 25 6 5.9786 0.9402 -0.0023 26 16 4.6244 -0.1046 -0.0023 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 5.0119 4.7898 0.0008 31 1 8.5768 9.1301 0.3600 32 1 7.0126 0.6281 -0.0029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928800843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:35 Heat of formation + Delta-G solvation = -222.466639 kcal Electronic energy + Delta-G solvation = -27089.541440 eV Core-core repulsion = 22341.807535 eV Total energy + Delta-G solvation = -4747.733905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.46678 -48.10316 -47.76713 -41.91499 -41.25302 -39.70078 -37.60853 -36.62013 -34.52147 -32.27802 -30.54203 -29.30885 -27.31738 -26.63103 -25.35247 -23.21963 -22.05694 -20.93831 -20.55257 -19.19009 -18.95592 -18.71914 -18.38376 -18.23908 -18.02184 -17.71615 -17.16322 -16.87781 -16.37495 -16.14672 -15.36873 -15.08908 -14.99187 -14.95362 -14.64976 -14.53704 -14.49099 -14.33276 -14.18427 -14.06704 -13.90995 -13.25050 -13.09301 -13.04021 -12.81858 -12.64488 -12.28034 -12.18763 -11.91563 -11.64271 -11.32559 -11.11301 -11.01653 -10.71538 -10.32411 -10.06585 -8.25153 -6.55970 -1.14455 -0.12289 0.22844 0.28785 1.09899 1.40398 1.44164 1.45992 1.57356 2.08148 2.17312 2.37082 2.49982 2.89855 3.05543 3.54254 3.69794 3.78003 3.86416 3.99275 4.15451 4.30442 4.36872 4.44571 4.74927 4.83560 5.03273 5.26786 5.46637 5.59970 5.98523 6.43281 6.47351 6.58548 7.04239 7.18059 8.67728 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003545 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.170895 B = 7897.665048 C = 8933.320011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.343 6.343 3 C 0.552 3.448 4 O -0.502 6.502 5 C -0.048 4.048 6 N -0.400 5.400 7 C -0.014 4.014 8 C 0.580 3.420 9 O -0.558 6.558 10 N -0.692 5.692 11 C 0.251 3.749 12 H 0.058 0.942 13 C -0.566 4.566 14 H 0.085 0.915 15 C 0.019 3.981 16 N -0.871 5.871 17 Si 0.983 3.017 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.415 3.585 22 F -0.205 7.205 23 F -0.147 7.147 24 F -0.217 7.217 25 C -0.194 4.194 26 S 0.409 5.591 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.067 0.933 30 H 0.414 0.586 31 H 0.271 0.729 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 -20.673 0.298 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.258 6.258 3 C 0.391 3.609 4 O -0.389 6.389 5 C -0.321 4.321 6 N -0.120 5.120 7 C -0.154 4.154 8 C 0.364 3.636 9 O -0.437 6.437 10 N -0.341 5.341 11 C 0.144 3.856 12 H 0.076 0.924 13 C -0.603 4.603 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.504 5.504 17 Si 0.806 3.194 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.189 1.189 21 C 0.359 3.641 22 F -0.187 7.187 23 F -0.128 7.128 24 F -0.199 7.199 25 C -0.338 4.338 26 S 0.664 5.336 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.086 0.914 30 H 0.250 0.750 31 H 0.081 0.919 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.525 -20.967 0.245 23.927 hybrid contribution 0.143 2.217 -0.170 2.228 sum -11.382 -18.750 0.075 21.934 Atomic orbital electron populations 1.23787 0.72494 1.06775 1.03190 1.86492 1.26339 1.29082 1.83914 1.19322 0.85606 0.82642 0.73287 1.90922 1.65812 1.37234 1.44890 1.25811 0.96941 0.93689 1.15620 1.66231 1.05263 1.31157 1.09371 1.20144 0.88238 0.94317 1.12686 1.17666 0.87028 0.82695 0.76165 1.90779 1.15392 1.85665 1.51821 1.45873 1.11371 1.04616 1.72263 1.19456 0.92771 0.86284 0.87078 0.92403 1.21174 1.01231 0.93977 1.43881 0.89742 1.25946 0.95800 1.02117 0.94774 1.70503 1.11282 1.27510 1.41134 0.85171 0.78744 0.76975 0.78541 1.19213 1.20455 1.18868 1.23230 0.74677 0.74339 0.91900 1.92993 1.52819 1.93329 1.79510 1.93384 1.69782 1.53391 1.96229 1.93056 1.83183 1.55257 1.88355 1.27925 1.09780 0.96014 1.00039 1.83370 0.89333 1.04337 1.56552 0.91488 0.83454 0.91427 0.74954 0.91918 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.34 -5.44 10.42 -56.97 -0.59 -6.03 16 3 C 0.55 13.28 7.96 70.22 0.56 13.84 16 4 O -0.50 -15.80 16.85 19.81 0.33 -15.46 16 5 C -0.05 -1.18 7.43 87.38 0.65 -0.54 16 6 N -0.40 -12.95 9.96 -179.14 -1.78 -14.73 16 7 C -0.01 -0.45 6.69 41.28 0.28 -0.18 16 8 C 0.58 24.62 7.34 86.69 0.64 25.26 16 9 O -0.56 -26.28 15.26 -4.01 -0.06 -26.35 16 10 N -0.69 -31.72 4.98 -449.29 -2.24 -33.95 16 11 C 0.25 13.25 2.21 44.24 0.10 13.35 16 12 H 0.06 3.39 7.58 -2.39 -0.02 3.37 16 13 C -0.57 -30.36 8.46 25.60 0.22 -30.14 16 14 H 0.08 4.34 7.74 -2.91 -0.02 4.32 16 15 C 0.02 1.03 5.20 84.65 0.44 1.47 16 16 N -0.87 -48.96 9.50 21.45 0.20 -48.76 16 17 Si 0.98 42.17 29.54 68.60 2.03 44.19 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.41 22.35 2.81 71.98 0.20 22.55 16 22 F -0.20 -10.70 16.94 44.97 0.76 -9.93 16 23 F -0.15 -8.43 12.91 44.97 0.58 -7.84 16 24 F -0.22 -11.39 15.67 44.97 0.70 -10.68 16 25 C -0.19 -4.31 10.66 67.50 0.72 -3.59 16 26 S 0.41 5.86 23.02 -56.49 -1.30 4.56 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.41 18.03 8.03 -92.71 -0.74 17.29 16 31 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.22 3.98 8.03 -2.91 -0.02 3.96 16 Total: -1.00 -73.18 319.80 4.11 -69.07 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.48 Total: 12.40 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 4.99 Total: 43.52 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.82 Total: -97.45 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.32 Total: -47.84 kcal Atomic # 9 Polarization: -30.51 SS G_CDS: 2.05 Total: -28.46 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.30 Total: 4.56 kcal Total: -73.18 4.11 -69.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.394 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds