Wall clock time and date at job start Tue Mar 31 2020 21:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35738 * 117.00009 * 2 1 4 4 C 1.39147 * 120.38582 * 0.03129 * 3 2 1 5 5 C 1.38378 * 118.46582 * 179.70442 * 4 3 2 6 6 C 1.39419 * 119.15813 * 0.50718 * 5 4 3 7 7 C 1.47916 * 119.65563 * 179.75301 * 6 5 4 8 8 O 1.21546 * 119.99461 * 359.72965 * 7 6 5 9 9 N 1.34777 * 120.00231 * 179.73180 * 7 6 5 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47054 * 324.99327 * 10 9 7 12 12 C 1.50697 * 109.47016 * 205.00057 * 10 9 7 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00021 * 180.02562 * 12 10 9 15 15 N 1.31519 * 119.99891 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47104 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47457 * 119.99350 * 16 14 12 19 19 H 1.48496 * 109.46986 * 239.99711 * 16 14 12 20 20 C 1.52997 * 109.47294 * 84.99596 * 10 9 7 21 21 F 1.39905 * 109.47157 * 179.97438 * 20 10 9 22 22 F 1.39900 * 109.47010 * 60.00333 * 20 10 9 23 23 F 1.39897 * 109.47422 * 300.00024 * 20 10 9 24 24 N 1.32848 * 120.69324 * 359.48009 * 6 5 4 25 25 C 1.31459 * 121.67805 * 0.27242 * 24 6 5 26 26 Cl 1.73602 * 119.61334 * 179.97438 * 25 24 6 27 27 H 1.08999 * 109.46670 * 299.98967 * 1 2 3 28 28 H 1.09000 * 109.47351 * 59.99420 * 1 2 3 29 29 H 1.08997 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.77041 * 359.97438 * 4 3 2 31 31 H 1.07998 * 120.42598 * 180.28087 * 5 4 3 32 32 H 0.97005 * 119.99645 * 359.97438 * 9 7 6 33 33 H 0.97001 * 120.00022 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2953 2.3815 0.0007 5 6 1.9645 3.5927 0.0069 6 6 3.3586 3.5985 0.0015 7 6 4.0851 4.8870 0.0026 8 8 3.4666 5.9333 0.0031 9 7 5.4328 4.9008 0.0029 10 6 6.1523 6.1769 0.0045 11 1 5.5976 6.9075 -0.5844 12 6 7.5208 5.9827 -0.5959 13 1 7.8244 5.0063 -0.9435 14 6 8.3857 7.0514 -0.7005 15 7 8.0161 8.2404 -0.2768 16 14 10.0818 6.8109 -1.4455 17 1 10.2513 5.3899 -1.8420 18 1 10.2249 7.6793 -2.6415 19 1 11.1176 7.1720 -0.4446 20 6 6.2929 6.6813 1.4420 21 9 6.9805 7.8997 1.4436 22 9 7.0049 5.7437 2.1977 23 9 5.0225 6.8616 1.9994 24 7 4.0415 2.4590 0.0009 25 6 3.4368 1.2918 0.0000 26 17 4.3822 -0.1642 -0.0015 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2158 2.3467 0.0008 31 1 1.4138 4.5217 0.0122 32 1 5.9264 4.0657 0.0028 33 1 8.6245 8.9923 -0.3507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:59 Heat of formation + Delta-G solvation = -194.243142 kcal Electronic energy + Delta-G solvation = -27274.309872 eV Core-core repulsion = 22525.756123 eV Total energy + Delta-G solvation = -4748.553749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.44075 -48.07718 -47.74300 -42.07483 -40.57386 -39.12508 -37.66678 -36.60183 -34.56255 -33.45013 -32.15266 -30.23883 -28.53899 -26.63164 -25.32692 -24.73828 -23.38853 -21.80655 -20.07674 -19.33130 -18.95762 -18.78829 -18.60236 -18.47311 -17.56107 -17.12049 -16.88832 -16.71188 -16.11838 -15.87503 -15.52413 -15.13743 -15.00412 -14.83269 -14.79616 -14.53786 -14.47934 -14.31473 -14.04954 -13.97197 -13.84952 -13.08961 -12.83825 -12.71811 -12.66016 -12.50869 -12.43277 -12.35241 -12.24240 -11.58703 -11.55493 -10.95980 -10.85669 -10.70700 -10.17208 -9.57571 -8.22971 -6.53444 -0.57758 -0.17336 0.66296 1.44933 1.46668 1.52242 1.60110 1.90314 2.06930 2.36814 2.45027 2.59789 2.92279 3.02182 3.47655 3.53355 3.71576 3.76888 3.83277 4.00672 4.18000 4.35070 4.43433 4.62844 4.66772 4.82628 4.88640 4.96653 5.31319 5.49979 5.62653 5.92318 6.24797 6.50459 6.64042 7.08461 7.21140 8.70048 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003505 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.252235 B = 7985.913147 C = 8858.118967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.303 6.303 3 C 0.130 3.870 4 C -0.144 4.144 5 C -0.058 4.058 6 C 0.038 3.962 7 C 0.563 3.437 8 O -0.559 6.559 9 N -0.690 5.690 10 C 0.250 3.750 11 H 0.057 0.943 12 C -0.563 4.563 13 H 0.087 0.913 14 C 0.018 3.982 15 N -0.871 5.871 16 Si 0.983 3.017 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.279 1.279 20 C 0.414 3.586 21 F -0.147 7.147 22 F -0.204 7.204 23 F -0.217 7.217 24 N -0.433 5.433 25 C 0.126 3.874 26 Cl -0.014 7.014 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.204 0.796 31 H 0.170 0.830 32 H 0.415 0.585 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 -16.334 -0.318 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.214 6.214 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.079 4.079 6 C -0.099 4.099 7 C 0.349 3.651 8 O -0.438 6.438 9 N -0.339 5.339 10 C 0.143 3.857 11 H 0.075 0.925 12 C -0.600 4.600 13 H 0.105 0.895 14 C -0.187 4.187 15 N -0.505 5.505 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.205 1.205 20 C 0.358 3.642 21 F -0.129 7.129 22 F -0.186 7.186 23 F -0.199 7.199 24 N -0.147 5.147 25 C -0.044 4.044 26 Cl 0.015 6.985 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.221 0.779 31 H 0.187 0.813 32 H 0.252 0.748 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.603 -15.640 -0.269 21.400 hybrid contribution 0.408 0.056 0.186 0.452 sum -14.195 -15.584 -0.084 21.080 Atomic orbital electron populations 1.23679 0.74655 1.06857 1.03517 1.86173 1.24793 1.23938 1.86521 1.19784 0.90640 0.87368 0.94327 1.22074 1.03204 0.88785 1.02862 1.22224 0.92331 1.01132 0.92178 1.20675 0.92600 0.89654 1.06981 1.18242 0.82515 0.88052 0.76268 1.90764 1.68033 1.33275 1.51684 1.45865 1.05828 1.10177 1.72018 1.19459 0.95225 0.84025 0.87005 0.92528 1.21216 0.97395 0.97656 1.43702 0.89513 1.25958 1.03458 0.94514 0.94818 1.70519 1.37798 1.00908 1.41314 0.85117 0.77353 0.79030 0.77888 1.18316 1.19921 1.20475 1.23246 0.72166 0.76811 0.91956 1.93384 1.78637 1.44596 1.96242 1.92993 1.79535 1.66573 1.79498 1.93056 1.42806 1.95616 1.88420 1.66751 1.41165 0.97175 1.09631 1.21060 0.87297 0.88880 1.07131 1.98405 1.73298 1.30146 1.96670 0.90360 0.90291 0.85475 0.77931 0.81259 0.74751 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.83 113.37 1.11 1.15 16 2 O -0.30 -4.66 9.96 -90.62 -0.90 -5.57 16 3 C 0.13 2.58 6.71 22.77 0.15 2.73 16 4 C -0.14 -2.31 9.12 22.52 0.21 -2.10 16 5 C -0.06 -1.38 9.62 22.59 0.22 -1.16 16 6 C 0.04 1.26 6.74 41.84 0.28 1.54 16 7 C 0.56 23.58 7.33 86.81 0.64 24.22 16 8 O -0.56 -26.15 14.89 -3.86 -0.06 -26.21 16 9 N -0.69 -30.84 4.97 -448.92 -2.23 -33.07 16 10 C 0.25 12.99 2.21 44.24 0.10 13.08 16 11 H 0.06 3.28 7.58 -2.39 -0.02 3.27 16 12 C -0.56 -29.63 8.47 25.60 0.22 -29.41 16 13 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 14 C 0.02 0.95 5.20 84.65 0.44 1.39 16 15 N -0.87 -48.63 9.50 21.45 0.20 -48.42 16 16 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.41 22.07 2.81 71.98 0.20 22.27 16 21 F -0.15 -8.40 12.91 44.97 0.58 -7.82 16 22 F -0.20 -10.49 16.94 44.97 0.76 -9.72 16 23 F -0.22 -11.32 15.68 44.97 0.70 -10.61 16 24 N -0.43 -13.84 9.50 -175.50 -1.67 -15.51 16 25 C 0.13 3.35 7.29 85.03 0.62 3.97 16 26 Cl -0.01 -0.34 28.66 -2.72 -0.08 -0.41 16 27 H 0.08 0.19 7.69 -2.39 -0.02 0.17 16 28 H 0.08 0.18 7.69 -2.39 -0.02 0.16 16 29 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.20 1.24 6.43 -2.91 -0.02 1.23 16 31 H 0.17 3.70 7.63 -2.91 -0.02 3.68 16 32 H 0.42 17.37 7.86 -92.70 -0.73 16.64 16 33 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.38 318.26 4.01 -64.37 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.48 Total: 11.69 kcal Atomic # 6 Polarization: 33.48 SS G_CDS: 4.19 Total: 37.67 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -3.70 Total: -97.00 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.96 Total: -31.77 kcal Atomic # 9 Polarization: -30.21 SS G_CDS: 2.05 Total: -28.16 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -68.38 4.01 -64.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.871 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds