Wall clock time and date at job start Tue Mar 31 2020 20:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47010 * 117.80742 * 3 2 1 5 5 N 1.46498 * 109.47080 * 179.97438 * 4 3 2 6 6 C 1.46505 * 120.00088 * 272.22848 * 5 4 3 7 7 C 1.50706 * 109.46695 * 265.08943 * 6 5 4 8 8 H 1.07995 * 120.00470 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99656 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00046 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47197 * 89.99904 * 11 9 7 13 13 H 1.48502 * 109.47079 * 210.00210 * 11 9 7 14 14 H 1.48501 * 109.46913 * 329.99938 * 11 9 7 15 15 C 1.34777 * 120.00132 * 92.22775 * 5 4 3 16 16 O 1.21473 * 119.99772 * 354.61309 * 15 5 4 17 17 C 1.48494 * 119.99993 * 174.89178 * 15 5 4 18 18 N 1.32477 * 119.17188 * 352.80947 * 17 15 5 19 19 C 1.32079 * 120.77957 * 179.75843 * 18 17 15 20 20 C 1.38916 * 119.14727 * 0.51473 * 19 18 17 21 21 Br 1.89108 * 120.75826 * 179.72302 * 20 19 18 22 22 C 1.38921 * 118.48884 * 359.74518 * 20 19 18 23 23 N 1.32086 * 119.14523 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.46976 * 357.80516 * 3 2 1 25 25 H 1.09007 * 109.46715 * 237.80634 * 3 2 1 26 26 H 1.09007 * 109.46785 * 60.00011 * 4 3 2 27 27 H 1.08994 * 109.47256 * 299.99847 * 4 3 2 28 28 H 1.09008 * 109.47088 * 25.08299 * 6 5 4 29 29 H 1.08994 * 109.47311 * 145.09050 * 6 5 4 30 30 H 0.96998 * 120.00142 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.42743 * 180.26303 * 19 18 17 32 32 H 1.07995 * 120.42987 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1177 0.6738 -1.2759 5 7 4.5827 0.6750 -1.2756 6 6 5.3142 1.7741 -0.6406 7 6 5.6700 2.8067 -1.6790 8 1 5.3807 2.6590 -2.7089 9 6 6.3651 3.9403 -1.3140 10 7 6.7170 4.1205 -0.0597 11 14 6.8055 5.2206 -2.6009 12 1 5.7133 6.2222 -2.6968 13 1 8.0674 5.8999 -2.2117 14 1 6.9860 4.5575 -3.9173 15 6 5.2576 -0.3350 -1.8596 16 8 4.6551 -1.2937 -2.2994 17 6 6.7380 -0.2786 -1.9597 18 7 7.3677 0.8306 -1.6018 19 6 8.6839 0.9138 -1.6735 20 6 9.4063 -0.1767 -2.1411 21 35 11.2916 -0.1045 -2.2699 22 6 8.7123 -1.3214 -2.5124 23 7 7.3954 -1.3367 -2.4103 24 1 2.9718 -1.0260 0.0394 25 1 2.9711 0.5484 0.8697 26 1 2.7539 1.7006 -1.3152 27 1 2.7547 0.1262 -2.1455 28 1 4.6893 2.2309 0.1269 29 1 6.2259 1.3882 -0.1847 30 1 7.2063 4.9178 0.1970 31 1 9.1917 1.8194 -1.3763 32 1 9.2424 -2.1872 -2.8805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930478088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:09 Heat of formation + Delta-G solvation = 56.723917 kcal Electronic energy + Delta-G solvation = -20777.215041 eV Core-core repulsion = 17399.265846 eV Total energy + Delta-G solvation = -3377.949195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34157 -40.41609 -37.92821 -36.93427 -34.91473 -34.54052 -34.25838 -32.50088 -30.84937 -28.94066 -26.68564 -25.77004 -24.97904 -24.25109 -21.11840 -19.10466 -18.72523 -18.48315 -18.13157 -17.23192 -16.79008 -16.45976 -16.27737 -15.94069 -15.52006 -15.39662 -14.80777 -14.65206 -14.38913 -14.15238 -13.59258 -13.57737 -13.29940 -12.97818 -12.70748 -12.69590 -12.47512 -12.20427 -12.00075 -11.92899 -11.73321 -11.59777 -11.52661 -11.02004 -10.38570 -10.24724 -9.91187 -9.53410 -7.98374 -5.98838 -0.80020 0.03631 0.28515 1.44211 1.50215 1.52562 1.54728 1.64134 1.81000 1.96438 2.52415 2.73481 2.94087 3.07106 3.29437 3.37683 3.39055 3.70060 3.86205 4.12133 4.14946 4.55828 4.58449 4.84179 4.98122 5.01417 5.08319 5.56151 5.75600 5.83867 5.94207 6.33038 6.41022 6.57087 6.79810 7.02053 7.18388 7.61744 9.08990 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.004490 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.977917 B = 6234.603602 C = 8134.026611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.122 3.878 5 N -0.570 5.570 6 C 0.250 3.750 7 C -0.489 4.489 8 H 0.037 0.963 9 C 0.041 3.959 10 N -0.910 5.910 11 Si 0.923 3.077 12 H -0.285 1.285 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.578 3.422 16 O -0.553 6.553 17 C 0.267 3.733 18 N -0.422 5.422 19 C 0.161 3.839 20 C -0.182 4.182 21 Br 0.007 6.993 22 C 0.168 3.832 23 N -0.486 5.486 24 H 0.121 0.879 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.181 0.819 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.116 -7.762 -1.123 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.072 4.072 4 C -0.002 4.002 5 N -0.300 5.300 6 C 0.130 3.870 7 C -0.528 4.528 8 H 0.055 0.945 9 C -0.159 4.159 10 N -0.551 5.551 11 Si 0.751 3.249 12 H -0.211 1.211 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.362 3.638 16 O -0.430 6.430 17 C -0.002 4.002 18 N -0.137 5.137 19 C -0.007 4.007 20 C -0.266 4.266 21 Br 0.091 6.909 22 C -0.001 4.001 23 N -0.201 5.201 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.198 0.802 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.832 -8.120 -1.205 12.058 hybrid contribution 1.298 1.174 -0.774 1.914 sum 10.130 -6.946 -1.979 12.441 Atomic orbital electron populations 1.81218 1.14279 1.10906 1.10294 1.29152 0.94993 0.91328 0.91603 1.19691 0.80188 1.05739 1.01570 1.21365 0.78767 1.02691 0.97385 1.48074 1.06573 1.22185 1.53142 1.19647 0.92129 0.82792 0.92422 1.21238 1.34059 1.03349 0.94187 0.94513 1.25083 0.96119 0.98807 0.95898 1.69954 1.40387 1.28222 1.16537 0.86129 0.77813 0.80551 0.80398 1.21092 1.20750 1.20907 1.17407 0.84396 0.82837 0.79119 1.90712 1.68595 1.33527 1.50190 1.23031 0.96621 0.86115 0.94409 1.69772 1.09394 1.22661 1.11893 1.23821 0.89504 0.97533 0.89828 1.24190 0.95039 1.00016 1.07398 1.96771 0.98175 1.98860 1.97063 1.23863 0.88287 0.97055 0.90849 1.68318 1.09783 1.28920 1.13078 0.86068 0.84877 0.88476 0.89951 0.94988 0.92395 0.92959 0.80185 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.45 18.54 20.01 0.37 -15.08 16 2 C 0.25 6.47 15.43 89.44 1.38 7.86 16 3 C -0.03 -0.70 6.03 28.79 0.17 -0.53 16 4 C 0.12 3.54 5.33 86.38 0.46 4.00 16 5 N -0.57 -20.50 2.47 -828.82 -2.05 -22.54 16 6 C 0.25 10.25 4.75 85.63 0.41 10.65 16 7 C -0.49 -22.66 7.42 25.60 0.19 -22.47 16 8 H 0.04 1.80 7.81 -2.91 -0.02 1.78 16 9 C 0.04 1.93 5.46 84.66 0.46 2.40 16 10 N -0.91 -44.92 13.29 21.45 0.28 -44.63 16 11 Si 0.92 39.35 29.54 68.60 2.03 41.38 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 15 C 0.58 22.40 7.65 86.98 0.67 23.06 16 16 O -0.55 -22.75 16.47 -3.63 -0.06 -22.81 16 17 C 0.27 10.03 7.41 137.66 1.02 11.05 16 18 N -0.42 -15.92 4.79 -189.05 -0.91 -16.82 16 19 C 0.16 5.06 11.09 84.82 0.94 6.00 16 20 C -0.18 -4.60 6.28 22.60 0.14 -4.46 16 21 Br 0.01 0.14 33.77 -20.37 -0.69 -0.55 16 22 C 0.17 4.25 11.09 84.82 0.94 5.19 16 23 N -0.49 -16.32 10.13 -189.04 -1.92 -18.24 16 24 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.13 2.62 8.14 -2.38 -0.02 2.60 16 26 H 0.10 2.76 8.09 -2.38 -0.02 2.74 16 27 H 0.08 2.45 7.44 -2.39 -0.02 2.44 16 28 H 0.03 1.34 8.04 -2.38 -0.02 1.32 16 29 H 0.06 2.54 5.73 -2.39 -0.01 2.52 16 30 H 0.26 12.51 8.31 -92.71 -0.77 11.74 16 31 H 0.18 5.43 8.06 -2.91 -0.02 5.40 16 32 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -59.10 316.06 5.02 -54.08 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.17 Total: 2.47 kcal Atomic # 6 Polarization: 35.97 SS G_CDS: 6.78 Total: 42.75 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -4.21 Total: -117.32 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.55 kcal Total: -59.10 5.02 -54.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930478088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.799 kcal (2) G-P(sol) polarization free energy of solvation -59.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds