Wall clock time and date at job start Tue Mar 31 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47150 * 2 1 4 4 C 1.36844 * 120.00681 * 278.97267 * 3 2 1 5 5 H 1.08000 * 120.00535 * 166.93536 * 4 3 2 6 6 C 1.39042 * 119.99651 * 346.92928 * 4 3 2 7 7 N 1.31369 * 120.00008 * 31.68072 * 6 4 3 8 8 Si 1.86804 * 120.00125 * 211.67895 * 6 4 3 9 9 H 1.48504 * 109.46935 * 60.00306 * 8 6 4 10 10 H 1.48500 * 109.47031 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46876 * 300.00304 * 8 6 4 12 12 C 1.34782 * 119.99641 * 98.96764 * 3 2 1 13 13 O 1.21673 * 120.00256 * 186.57888 * 12 3 2 14 14 C 1.47156 * 119.99872 * 6.58938 * 12 3 2 15 15 C 1.39169 * 120.87825 * 324.64318 * 14 12 3 16 16 C 1.39649 * 119.21003 * 179.97438 * 15 14 12 17 17 Br 1.89101 * 119.47898 * 180.02562 * 16 15 14 18 18 C 1.35403 * 121.03631 * 0.02562 * 16 15 14 19 19 N 1.35754 * 121.67126 * 359.95511 * 18 16 15 20 20 N 1.40249 * 133.23735 * 180.33776 * 19 18 16 21 21 C 1.31158 * 107.07742 * 180.10827 * 20 19 18 22 22 N 1.32731 * 109.59724 * 359.62511 * 21 20 19 23 23 C 1.32289 * 109.65500 * 0.23910 * 22 21 20 24 24 H 1.09001 * 109.47291 * 308.83897 * 1 2 3 25 25 H 1.09001 * 109.47246 * 68.83267 * 1 2 3 26 26 H 1.08999 * 109.47309 * 188.83720 * 1 2 3 27 27 H 1.09000 * 109.46953 * 240.00663 * 2 1 3 28 28 H 1.08999 * 109.47041 * 120.00277 * 2 1 3 29 29 H 0.96999 * 120.00027 * 180.02562 * 7 6 4 30 30 H 1.07994 * 120.39495 * 359.95751 * 15 14 12 31 31 H 1.07998 * 119.15754 * 179.97438 * 18 16 15 32 32 H 1.08005 * 125.20218 * 179.88484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0722 2.0880 -1.1705 5 1 2.2266 3.1567 -1.1495 6 6 1.9283 1.4303 -2.3870 7 7 1.1676 0.3625 -2.4705 8 14 2.8168 2.0648 -3.9028 9 1 4.2817 2.0524 -3.6594 10 1 2.4999 1.1939 -5.0631 11 1 2.3745 3.4528 -4.1909 12 6 2.4145 1.9559 1.1530 13 8 2.7062 3.1369 1.1754 14 6 2.4945 1.1548 2.3848 15 6 1.5767 0.1395 2.6374 16 6 1.6855 -0.5994 3.8174 17 35 0.4430 -1.9812 4.1680 18 6 2.6666 -0.3420 4.7144 19 7 3.5823 0.6386 4.5073 20 7 4.6787 1.1015 5.2494 21 6 5.2177 2.0841 4.5681 22 7 4.5408 2.2683 3.4413 23 6 3.5412 1.4043 3.3764 24 1 -0.3634 0.6445 0.8005 25 1 -0.3634 0.3711 -0.9583 26 1 -0.3634 -1.0154 0.1579 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.0675 -0.0966 -3.3190 30 1 0.7897 -0.0742 1.9295 31 1 2.7221 -0.9320 5.6173 32 1 6.0828 2.6533 4.8748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930621363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:43 Heat of formation + Delta-G solvation = 118.584225 kcal Electronic energy + Delta-G solvation = -21330.693609 eV Core-core repulsion = 17955.426879 eV Total energy + Delta-G solvation = -3375.266730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.81786 -40.84093 -38.81930 -37.14772 -34.97301 -33.79026 -33.30483 -31.83084 -31.12858 -30.19546 -27.47953 -25.56736 -24.50130 -23.99214 -23.50082 -21.20974 -19.26770 -18.93865 -18.74172 -17.61184 -17.34272 -17.09334 -16.64515 -15.98488 -15.74271 -15.27255 -15.09236 -14.91417 -14.08808 -13.96814 -13.88891 -13.56314 -13.10842 -12.96951 -12.67798 -12.65567 -12.42933 -12.18695 -12.10643 -11.91486 -11.62592 -11.55460 -11.24738 -10.71722 -10.52664 -10.41346 -9.90607 -9.41279 -8.51783 -5.82556 -0.91012 -0.43266 -0.02009 1.03336 1.31013 1.42728 1.45533 1.52062 1.76488 2.18276 2.32513 2.61310 2.75452 2.96563 3.11265 3.36670 3.62479 3.75862 4.00852 4.27365 4.35321 4.46221 4.70739 4.77948 4.81651 4.99836 5.10436 5.20384 5.33764 5.40906 5.50818 5.88970 5.99246 6.44731 6.78360 7.09116 7.32187 7.96767 8.45035 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.005254 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.314655 B = 5327.707009 C = 7254.153948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 N -0.421 5.421 4 C -0.352 4.352 5 H 0.076 0.924 6 C 0.025 3.975 7 N -0.834 5.834 8 Si 0.972 3.028 9 H -0.281 1.281 10 H -0.260 1.260 11 H -0.274 1.274 12 C 0.457 3.543 13 O -0.624 6.624 14 C -0.096 4.096 15 C -0.040 4.040 16 C -0.132 4.132 17 Br 0.033 6.967 18 C 0.157 3.843 19 N -0.294 5.294 20 N -0.342 5.342 21 C 0.238 3.762 22 N -0.561 5.561 23 C 0.296 3.704 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.283 0.717 30 H 0.187 0.813 31 H 0.217 0.783 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -12.048 12.577 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.037 4.037 3 N -0.136 5.136 4 C -0.479 4.479 5 H 0.094 0.906 6 C -0.183 4.183 7 N -0.469 5.469 8 Si 0.796 3.204 9 H -0.207 1.207 10 H -0.184 1.184 11 H -0.199 1.199 12 C 0.247 3.753 13 O -0.513 6.513 14 C -0.104 4.104 15 C -0.067 4.067 16 C -0.216 4.216 17 Br 0.117 6.883 18 C 0.027 3.973 19 N -0.069 5.069 20 N -0.171 5.171 21 C -0.061 4.061 22 N -0.290 5.290 23 C 0.039 3.961 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.204 0.796 31 H 0.234 0.766 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -2.457 -12.056 12.998 17.898 hybrid contribution 0.600 0.980 -1.019 1.535 sum -1.857 -11.077 11.979 16.421 Atomic orbital electron populations 1.22037 0.94334 1.01620 1.02360 1.22459 0.96232 0.82158 1.02809 1.43913 1.51136 1.12873 1.05706 1.19495 1.51255 0.93771 0.83336 0.90590 1.25855 0.95075 0.96496 1.00832 1.70123 1.28533 1.19983 1.28231 0.85339 0.78930 0.78849 0.77325 1.20729 1.18442 1.19913 1.17467 0.87030 0.87332 0.83439 1.90631 1.57872 1.17241 1.85517 1.20206 0.95571 0.99871 0.94792 1.22603 0.97777 0.90470 0.95890 1.21129 1.00353 1.02649 0.97479 1.96818 1.53845 1.42540 1.95080 1.21905 0.85758 0.88637 1.01037 1.47898 1.20636 1.23598 1.14769 1.78424 1.00485 1.19703 1.18537 1.27209 0.99272 0.92700 0.86878 1.70947 1.08833 1.25852 1.23364 1.22611 0.95200 0.89901 0.88413 0.94692 0.90855 0.89786 0.88591 0.90894 0.90581 0.79600 0.76613 0.71481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 8.50 71.98 0.61 -4.70 16 2 C 0.09 3.52 4.88 86.38 0.42 3.94 16 3 N -0.42 -21.54 2.64 -639.55 -1.69 -23.23 16 4 C -0.35 -19.47 9.29 84.10 0.78 -18.69 16 5 H 0.08 4.65 7.38 -2.91 -0.02 4.63 16 6 C 0.02 1.22 5.11 84.95 0.43 1.65 16 7 N -0.83 -38.28 8.31 21.68 0.18 -38.10 16 8 Si 0.97 40.10 29.65 68.60 2.03 42.14 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 C 0.46 24.12 7.37 86.58 0.64 24.76 16 13 O -0.62 -38.61 16.48 -4.26 -0.07 -38.68 16 14 C -0.10 -4.05 5.61 -18.61 -0.10 -4.16 16 15 C -0.04 -1.29 7.23 22.83 0.17 -1.13 16 16 C -0.13 -3.23 6.16 21.96 0.14 -3.10 16 17 Br 0.03 0.58 33.64 -20.37 -0.69 -0.11 16 18 C 0.16 3.79 10.83 83.43 0.90 4.69 16 19 N -0.29 -9.56 3.90 -188.45 -0.73 -10.29 16 20 N -0.34 -10.59 12.78 -61.30 -0.78 -11.37 16 21 C 0.24 7.48 12.98 180.79 2.35 9.83 16 22 N -0.56 -23.88 11.17 -193.53 -2.16 -26.04 16 23 C 0.30 12.19 7.75 135.77 1.05 13.24 16 24 H 0.03 1.24 7.14 -2.39 -0.02 1.22 16 25 H 0.07 3.10 6.27 -2.39 -0.01 3.09 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.10 4.25 5.71 -2.39 -0.01 4.24 16 28 H 0.07 2.63 4.33 -2.39 -0.01 2.62 16 29 H 0.28 11.98 8.31 -92.71 -0.77 11.21 16 30 H 0.19 5.75 3.22 -2.91 -0.01 5.74 16 31 H 0.22 3.30 8.05 -2.91 -0.02 3.27 16 32 H 0.27 5.33 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -71.50 292.24 4.67 -66.83 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.20 Total: 12.50 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 7.39 Total: 26.34 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.19 Total: -109.03 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.07 Total: -38.68 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 35 Polarization: 0.58 SS G_CDS: -0.69 Total: -0.11 kcal Total: -71.50 4.67 -66.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930621363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.414 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds