Wall clock time and date at job start Tue Mar 31 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47491 * 2 1 4 4 C 1.50698 * 109.47693 * 240.00000 * 2 1 3 5 5 H 1.08003 * 120.00248 * 275.01180 * 4 2 1 6 6 C 1.37879 * 120.00061 * 95.00170 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.92370 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.91820 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 N 1.46500 * 109.46835 * 120.00006 * 2 1 3 13 13 C 1.34781 * 120.00238 * 274.99456 * 12 2 1 14 14 O 1.21623 * 119.99381 * 0.02562 * 13 12 2 15 15 C 1.47292 * 120.00150 * 180.02562 * 13 12 2 16 16 C 1.39061 * 120.87631 * 359.72083 * 15 13 12 17 17 C 1.39677 * 119.22217 * 179.79323 * 16 15 13 18 18 Br 1.89098 * 119.48609 * 180.23649 * 17 16 15 19 19 C 1.35376 * 121.02781 * 0.50268 * 17 16 15 20 20 N 1.35730 * 121.65945 * 359.73398 * 19 17 16 21 21 N 1.40238 * 133.24173 * 180.02562 * 20 19 17 22 22 C 1.31160 * 107.08490 * 180.02562 * 21 20 19 23 23 N 1.32729 * 109.59424 * 359.97438 * 22 21 20 24 24 C 1.32297 * 109.66343 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47365 * 175.03440 * 1 2 3 26 26 H 1.09001 * 109.46944 * 55.03325 * 1 2 3 27 27 H 1.08998 * 109.47309 * 295.04120 * 1 2 3 28 28 H 0.96997 * 119.99915 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99838 * 95.00168 * 12 2 1 30 30 H 1.08000 * 120.39070 * 0.02562 * 16 15 13 31 31 H 1.07995 * 119.16726 * 179.75873 * 19 17 16 32 32 H 1.07997 * 125.20583 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8574 1.1617 2.4118 15 6 2.6385 -0.7125 3.5597 16 6 2.9693 -2.0626 3.5192 17 6 3.4362 -2.6854 4.6790 18 35 3.8946 -4.5193 4.6306 19 6 3.5605 -1.9978 5.8385 20 7 3.2441 -0.6806 5.9231 21 7 3.2777 0.2501 6.9716 22 6 2.8570 1.3934 6.4856 23 7 2.5603 1.2484 5.2001 24 6 2.7852 -0.0016 4.8295 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3634 0.4350 0.9310 28 1 2.9365 -0.1048 -4.2555 29 1 2.2489 -1.6318 1.1526 30 1 2.8701 -2.6221 2.6008 31 1 3.9208 -2.5102 6.7182 32 1 2.7660 2.3123 7.0457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:20 Heat of formation + Delta-G solvation = 74.103261 kcal Electronic energy + Delta-G solvation = -20530.080487 eV Core-core repulsion = 17152.884917 eV Total energy + Delta-G solvation = -3377.195570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.90293 -40.74937 -39.01696 -36.74853 -34.96121 -34.31267 -33.47051 -32.18474 -31.00258 -30.14564 -27.31303 -26.25966 -24.62053 -23.88323 -22.58092 -21.46759 -19.76206 -19.06401 -18.46866 -18.07849 -17.53298 -17.11784 -16.80497 -16.10884 -15.80830 -15.33043 -15.11324 -14.54438 -14.44387 -14.28603 -14.08025 -13.86474 -13.30702 -13.08418 -13.02185 -12.77902 -12.48211 -12.40356 -11.91362 -11.86078 -11.60602 -11.30200 -11.21500 -10.97195 -10.80569 -10.61842 -9.93439 -9.50579 -8.37042 -6.42616 -1.08343 -0.49922 -0.07041 0.96251 1.25858 1.31164 1.36715 1.46790 1.61770 2.13272 2.29095 2.34693 2.58302 2.88195 3.06825 3.20583 3.53883 3.63792 3.92344 4.18870 4.32766 4.46926 4.61150 4.75552 4.84251 4.91689 5.11258 5.12705 5.29373 5.37295 5.47387 5.67948 6.12855 6.61920 6.70367 6.79731 7.21604 7.35176 8.77321 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.004156 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.325315 B = 6736.373800 C = 8558.455000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.235 3.765 3 H 0.030 0.970 4 C -0.522 4.522 5 H 0.066 0.934 6 C 0.039 3.961 7 N -0.926 5.926 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.257 1.257 12 N -0.691 5.691 13 C 0.551 3.449 14 O -0.564 6.564 15 C -0.126 4.126 16 C 0.021 3.979 17 C -0.146 4.146 18 Br 0.033 6.967 19 C 0.186 3.814 20 N -0.300 5.300 21 N -0.340 5.340 22 C 0.243 3.757 23 N -0.552 5.552 24 C 0.302 3.698 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.270 0.730 29 H 0.407 0.593 30 H 0.186 0.814 31 H 0.218 0.782 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -9.980 21.841 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.132 3.868 3 H 0.048 0.952 4 C -0.561 4.561 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.564 5.564 8 Si 0.744 3.256 9 H -0.203 1.203 10 H -0.203 1.203 11 H -0.181 1.181 12 N -0.342 5.342 13 C 0.337 3.663 14 O -0.444 6.444 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.230 4.230 18 Br 0.117 6.883 19 C 0.055 3.945 20 N -0.075 5.075 21 N -0.169 5.169 22 C -0.056 4.056 23 N -0.280 5.280 24 C 0.044 3.956 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.244 0.756 30 H 0.203 0.797 31 H 0.234 0.766 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.291 -9.440 22.278 24.418 hybrid contribution 0.080 0.934 -0.597 1.111 sum 3.371 -8.506 21.681 23.532 Atomic orbital electron populations 1.22117 0.96833 1.01624 0.99474 1.18953 0.92149 0.93161 0.82533 0.95227 1.21143 1.44225 0.95101 0.95606 0.91589 1.25494 0.93794 1.01757 0.95116 1.69953 1.46491 1.37549 1.02398 0.86185 0.79623 0.82196 0.77626 1.20291 1.20301 1.18143 1.46250 1.64943 1.14380 1.08602 1.17891 0.78731 0.86509 0.83216 1.90819 1.51611 1.16752 1.85176 1.20126 1.09426 0.93678 0.90190 1.22065 0.88094 0.91023 0.99352 1.21113 1.11489 0.95945 0.94463 1.96914 1.91810 1.00680 1.98923 1.22047 0.92314 0.79648 1.00495 1.47987 1.41514 1.09238 1.08711 1.78512 1.32091 0.99454 1.06834 1.27258 0.90909 0.98218 0.89167 1.71028 1.27961 1.15073 1.13961 1.22646 0.94693 0.88683 0.89540 0.91795 0.93243 0.94650 0.92018 0.75648 0.79659 0.76576 0.71604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.47 71.98 0.68 -5.27 16 2 C 0.24 10.83 2.22 44.24 0.10 10.93 16 3 H 0.03 1.52 4.73 -2.39 -0.01 1.51 16 4 C -0.52 -27.01 9.05 25.60 0.23 -26.78 16 5 H 0.07 3.54 8.06 -2.91 -0.02 3.52 16 6 C 0.04 2.16 5.47 84.66 0.46 2.62 16 7 N -0.93 -53.57 13.96 21.45 0.30 -53.28 16 8 Si 0.92 44.08 26.99 68.60 1.85 45.93 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -12.16 6.82 99.48 0.68 -11.49 16 12 N -0.69 -26.33 5.02 -449.50 -2.26 -28.59 16 13 C 0.55 21.54 7.74 86.62 0.67 22.21 16 14 O -0.56 -27.14 15.89 -4.10 -0.07 -27.20 16 15 C -0.13 -3.82 6.06 -18.61 -0.11 -3.93 16 16 C 0.02 0.44 9.36 22.82 0.21 0.65 16 17 C -0.15 -2.35 6.16 21.96 0.14 -2.22 16 18 Br 0.03 0.39 33.64 -20.37 -0.69 -0.29 16 19 C 0.19 3.07 10.82 83.43 0.90 3.98 16 20 N -0.30 -7.39 3.90 -188.51 -0.73 -8.12 16 21 N -0.34 -8.37 12.78 -61.30 -0.78 -9.15 16 22 C 0.24 6.04 12.98 180.79 2.35 8.39 16 23 N -0.55 -18.87 10.68 -193.56 -2.07 -20.93 16 24 C 0.30 9.56 7.72 135.75 1.05 10.61 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.41 12.63 6.70 -92.71 -0.62 12.01 16 30 H 0.19 3.04 6.49 -2.91 -0.02 3.02 16 31 H 0.22 1.91 8.05 -2.91 -0.02 1.89 16 32 H 0.27 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -73.86 305.76 2.78 -71.08 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.54 Total: 9.36 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 6.68 Total: 21.20 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.54 Total: -120.07 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.85 Total: 45.93 kcal Atomic # 35 Polarization: 0.39 SS G_CDS: -0.69 Total: -0.29 kcal Total: -73.86 2.78 -71.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.186 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds