Wall clock time and date at job start Tue Mar 31 2020 20:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 5 5 H 1.08001 * 119.99810 * 120.00346 * 4 2 1 6 6 C 1.37871 * 119.99883 * 300.00593 * 4 2 1 7 7 N 1.31511 * 120.00532 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47380 * 89.99603 * 8 6 4 10 10 H 1.48494 * 109.47533 * 210.00034 * 8 6 4 11 11 H 1.48506 * 109.46734 * 329.99670 * 8 6 4 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21623 * 120.00076 * 359.97438 * 13 12 2 15 15 C 1.47296 * 119.99903 * 179.97438 * 13 12 2 16 16 C 1.39065 * 120.87873 * 359.71767 * 15 13 12 17 17 C 1.39672 * 119.22356 * 179.76932 * 16 15 13 18 18 Br 1.89105 * 119.48712 * 180.23886 * 17 16 15 19 19 C 1.35376 * 121.03102 * 0.49752 * 17 16 15 20 20 N 1.35733 * 121.65627 * 359.75937 * 19 17 16 21 21 N 1.40248 * 133.24149 * 179.97438 * 20 19 17 22 22 C 1.31156 * 107.08079 * 180.02562 * 21 20 19 23 23 N 1.32729 * 109.60010 * 359.97438 * 22 21 20 24 24 C 1.32296 * 109.66111 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00437 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 30 30 H 1.08007 * 120.38503 * 0.02562 * 16 15 13 31 31 H 1.07998 * 119.17345 * 179.78221 * 19 17 16 32 32 H 1.07998 * 125.20287 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5437 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5651 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1617 -2.4119 15 6 2.6386 -0.7125 -3.5596 16 6 2.9806 -2.0597 -3.5162 17 6 3.4384 -2.6848 -4.6784 18 35 3.8990 -4.5182 -4.6294 19 6 3.5624 -1.9974 -5.8380 20 7 3.2448 -0.6805 -5.9229 21 7 3.2778 0.2501 -6.9717 22 6 2.8570 1.3933 -6.4856 23 7 2.5596 1.2482 -5.2003 24 6 2.7853 -0.0015 -4.8295 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1619 3.4844 29 1 2.2491 -1.6317 -1.1525 30 1 2.8893 -2.6172 -2.5957 31 1 3.9227 -2.5098 -6.7178 32 1 2.7663 2.3123 -7.0457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931156411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:24 Heat of formation + Delta-G solvation = 96.400129 kcal Electronic energy + Delta-G solvation = -20444.930113 eV Core-core repulsion = 17068.701408 eV Total energy + Delta-G solvation = -3376.228705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.84891 -39.16998 -37.89767 -34.88073 -33.76988 -32.61762 -32.35474 -30.69334 -29.48282 -28.61851 -25.32787 -25.04213 -23.53936 -22.72453 -21.18057 -19.75191 -18.28613 -17.72013 -17.26372 -16.45835 -16.26780 -15.61241 -15.23890 -14.53532 -14.32851 -14.15247 -13.51959 -13.35163 -13.15570 -12.82814 -12.37874 -12.04768 -11.77508 -11.41834 -11.12794 -11.05642 -10.93191 -10.88787 -10.72695 -10.33524 -10.26118 -10.18543 -9.68101 -9.27211 -9.09028 -8.59251 -8.52768 -7.99164 -6.14792 -4.24719 -0.05788 0.52343 0.75337 1.92403 2.27466 2.81497 3.23675 3.30183 3.31611 3.49131 3.61646 3.79397 4.01879 4.10872 4.33166 4.58996 4.62456 4.92536 5.17832 5.22955 5.46622 5.66188 5.93949 6.07542 6.30352 6.79892 6.93013 7.10740 7.35361 7.49263 7.64288 7.75792 7.86884 8.10913 8.52539 8.72002 8.97300 9.42556 10.91164 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003962 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.316127 B = 7065.743587 C = 9115.743932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.546 3.454 14 O -0.510 6.510 15 C -0.081 4.081 16 C -0.020 4.020 17 C -0.141 4.141 18 Br 0.001 6.999 19 C 0.167 3.833 20 N -0.297 5.297 21 N -0.336 5.336 22 C 0.240 3.760 23 N -0.499 5.499 24 C 0.318 3.682 25 H 0.092 0.908 26 H 0.016 0.984 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -11.640 -17.444 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.328 3.672 14 O -0.386 6.386 15 C -0.090 4.090 16 C -0.047 4.047 17 C -0.225 4.225 18 Br 0.085 6.915 19 C 0.035 3.965 20 N -0.073 5.073 21 N -0.166 5.166 22 C -0.060 4.060 23 N -0.225 5.225 24 C 0.060 3.940 25 H 0.110 0.890 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.019 -10.941 -17.917 21.839 hybrid contribution 0.369 -0.701 0.822 1.142 sum 6.388 -11.642 -17.095 21.647 Atomic orbital electron populations 1.22090 0.98169 0.99260 1.01135 1.18836 0.91189 0.94125 0.79360 0.92952 1.21174 1.32680 1.13373 0.90173 0.91964 1.24873 0.94729 0.94938 0.99046 1.69899 1.35649 1.22352 1.23984 0.86441 0.78625 0.79823 0.82165 1.20546 1.21073 1.19799 1.46485 1.64831 1.13420 1.10055 1.17419 0.80290 0.87050 0.82412 1.90871 1.49146 1.14524 1.84094 1.20786 1.04135 0.92342 0.91696 1.21778 0.92214 0.92720 0.97993 1.20985 1.11878 0.94400 0.95255 1.96840 1.92015 1.03639 1.98986 1.21295 0.95062 0.80953 0.99163 1.47838 1.41644 1.08323 1.09455 1.78558 1.31832 0.99360 1.06832 1.26514 0.92316 0.97022 0.90163 1.71092 1.25793 1.13767 1.11865 1.22640 0.94248 0.88353 0.88803 0.88973 0.96466 0.95347 0.92492 0.77999 0.81627 0.80293 0.75232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.57 2.56 -69.09 -0.18 6.39 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 N -0.70 -13.96 5.02 -56.05 -0.28 -14.24 16 13 C 0.55 11.04 7.74 -12.58 -0.10 10.94 16 14 O -0.51 -12.54 15.89 5.26 0.08 -12.46 16 15 C -0.08 -1.30 6.06 -102.68 -0.62 -1.92 16 16 C -0.02 -0.24 9.36 -38.74 -0.36 -0.60 16 17 C -0.14 -1.38 6.16 -40.07 -0.25 -1.62 16 18 Br 0.00 0.01 33.64 -68.01 -2.29 -2.28 16 19 C 0.17 1.68 10.82 -16.85 -0.18 1.50 16 20 N -0.30 -4.03 3.90 -10.93 -0.04 -4.08 16 21 N -0.34 -4.54 12.78 29.27 0.37 -4.16 16 22 C 0.24 3.18 12.98 -91.89 -1.19 1.99 16 23 N -0.50 -8.73 10.68 -12.53 -0.13 -8.86 16 24 C 0.32 5.24 7.72 -154.45 -1.19 4.05 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 6.36 6.64 -40.82 -0.27 6.09 16 30 H 0.17 1.61 6.49 -52.48 -0.34 1.27 16 31 H 0.18 1.23 8.05 -52.49 -0.42 0.81 16 32 H 0.23 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -32.71 306.01 -8.75 -41.46 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.55 Total: 3.47 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -4.12 Total: 5.18 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.54 Total: -55.06 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.71 -8.75 -41.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.857 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds