Wall clock time and date at job start Tue Mar 31 2020 20:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 5 5 H 1.08001 * 119.99810 * 120.00346 * 4 2 1 6 6 C 1.37871 * 119.99883 * 300.00593 * 4 2 1 7 7 N 1.31511 * 120.00532 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47380 * 89.99603 * 8 6 4 10 10 H 1.48494 * 109.47533 * 210.00034 * 8 6 4 11 11 H 1.48506 * 109.46734 * 329.99670 * 8 6 4 12 12 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 13 13 C 1.34777 * 120.00258 * 85.00009 * 12 2 1 14 14 O 1.21623 * 120.00076 * 359.97438 * 13 12 2 15 15 C 1.47296 * 119.99903 * 179.97438 * 13 12 2 16 16 C 1.39065 * 120.87873 * 359.71767 * 15 13 12 17 17 C 1.39672 * 119.22356 * 179.76932 * 16 15 13 18 18 Br 1.89105 * 119.48712 * 180.23886 * 17 16 15 19 19 C 1.35376 * 121.03102 * 0.49752 * 17 16 15 20 20 N 1.35733 * 121.65627 * 359.75937 * 19 17 16 21 21 N 1.40248 * 133.24149 * 179.97438 * 20 19 17 22 22 C 1.31156 * 107.08079 * 180.02562 * 21 20 19 23 23 N 1.32729 * 109.60010 * 359.97438 * 22 21 20 24 24 C 1.32296 * 109.66111 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00437 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99694 * 264.99399 * 12 2 1 30 30 H 1.08007 * 120.38503 * 0.02562 * 16 15 13 31 31 H 1.07998 * 119.17345 * 179.78221 * 19 17 16 32 32 H 1.07998 * 125.20287 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5437 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5651 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8574 1.1617 -2.4119 15 6 2.6386 -0.7125 -3.5596 16 6 2.9806 -2.0597 -3.5162 17 6 3.4384 -2.6848 -4.6784 18 35 3.8990 -4.5182 -4.6294 19 6 3.5624 -1.9974 -5.8380 20 7 3.2448 -0.6805 -5.9229 21 7 3.2778 0.2501 -6.9717 22 6 2.8570 1.3933 -6.4856 23 7 2.5596 1.2482 -5.2003 24 6 2.7853 -0.0015 -4.8295 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1619 3.4844 29 1 2.2491 -1.6317 -1.1525 30 1 2.8893 -2.6172 -2.5957 31 1 3.9227 -2.5098 -6.7178 32 1 2.7663 2.3123 -7.0457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:23 Heat of formation + Delta-G solvation = 75.349549 kcal Electronic energy + Delta-G solvation = -20445.842935 eV Core-core repulsion = 17068.701408 eV Total energy + Delta-G solvation = -3377.141527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.89679 -40.69273 -39.00090 -36.73649 -34.96774 -34.22733 -33.44416 -31.91570 -30.68681 -30.04588 -27.31755 -26.23657 -24.62093 -23.90972 -22.73656 -21.41702 -19.60255 -18.95854 -18.45360 -17.69263 -17.52477 -17.04730 -16.81973 -16.16318 -15.78345 -15.31294 -15.03151 -14.48661 -14.40629 -14.08794 -13.86489 -13.67663 -13.07849 -12.95266 -12.88666 -12.74377 -12.43504 -12.23050 -12.09598 -11.89773 -11.60223 -11.29039 -11.08921 -10.91974 -10.61149 -10.56694 -9.87266 -9.49215 -8.13878 -6.31556 -1.07187 -0.49531 -0.06924 0.96824 1.27299 1.49715 1.50051 1.60611 1.63388 2.17318 2.37208 2.47956 2.59665 2.93987 3.17447 3.20987 3.54912 3.64509 3.93838 4.19908 4.35061 4.58219 4.79166 4.92137 4.95017 5.11190 5.13005 5.30033 5.44010 5.59274 5.69338 5.90799 6.10804 6.71312 6.74194 6.86897 7.32048 7.47431 8.92682 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003962 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.316127 B = 7065.743587 C = 9115.743932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.080 0.920 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.255 1.255 12 N -0.692 5.692 13 C 0.548 3.452 14 O -0.567 6.567 15 C -0.125 4.125 16 C 0.021 3.979 17 C -0.145 4.145 18 Br 0.034 6.966 19 C 0.185 3.815 20 N -0.299 5.299 21 N -0.339 5.339 22 C 0.243 3.757 23 N -0.554 5.554 24 C 0.301 3.699 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.045 0.955 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.188 0.812 31 H 0.218 0.782 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -15.079 -18.512 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.018 0.982 4 C -0.582 4.582 5 H 0.098 0.902 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.179 1.179 12 N -0.342 5.342 13 C 0.334 3.666 14 O -0.447 6.447 15 C -0.133 4.133 16 C -0.005 4.005 17 C -0.229 4.229 18 Br 0.119 6.881 19 C 0.054 3.946 20 N -0.074 5.074 21 N -0.168 5.168 22 C -0.056 4.056 23 N -0.282 5.282 24 C 0.044 3.956 25 H 0.086 0.914 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.205 0.795 31 H 0.235 0.765 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 7.448 -14.445 -19.019 25.017 hybrid contribution -0.006 0.251 1.023 1.053 sum 7.442 -14.195 -17.996 24.099 Atomic orbital electron populations 1.21910 0.98125 0.99753 0.99550 1.18416 0.91219 0.92061 0.81349 0.98188 1.21524 1.32619 1.13724 0.90357 0.90177 1.25797 0.94828 0.95555 1.02353 1.70062 1.37009 1.24001 1.24596 0.85334 0.77578 0.79417 0.77944 1.20592 1.21277 1.17877 1.46110 1.64950 1.14150 1.09003 1.17921 0.78865 0.86494 0.83341 1.90829 1.51571 1.17109 1.85153 1.20145 1.09223 0.93866 0.90093 1.22057 0.88131 0.90836 0.99476 1.21112 1.11520 0.95952 0.94352 1.96906 1.91715 1.00603 1.98924 1.22070 0.92355 0.79601 1.00570 1.48002 1.41471 1.09293 1.08642 1.78503 1.32127 0.99422 1.06761 1.27255 0.90937 0.98253 0.89134 1.71038 1.27916 1.15240 1.14037 1.22651 0.94720 0.88669 0.89606 0.91379 0.97180 0.93589 0.92606 0.75743 0.79504 0.76504 0.71624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.92 2.56 44.25 0.11 14.04 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.54 -27.74 8.73 25.60 0.22 -27.52 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.12 11.32 21.44 0.24 -51.87 16 8 Si 0.97 40.79 29.54 68.60 2.03 42.81 16 9 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 12 N -0.69 -28.00 5.02 -449.50 -2.26 -30.26 16 13 C 0.55 22.99 7.74 86.63 0.67 23.66 16 14 O -0.57 -29.75 15.89 -4.11 -0.07 -29.81 16 15 C -0.12 -3.97 6.06 -18.61 -0.11 -4.08 16 16 C 0.02 0.45 9.36 22.81 0.21 0.67 16 17 C -0.15 -2.35 6.16 21.95 0.14 -2.22 16 18 Br 0.03 0.40 33.64 -20.37 -0.69 -0.29 16 19 C 0.18 3.13 10.82 83.43 0.90 4.03 16 20 N -0.30 -7.63 3.90 -188.50 -0.73 -8.36 16 21 N -0.34 -8.65 12.78 -61.30 -0.78 -9.43 16 22 C 0.24 6.35 12.98 180.79 2.35 8.70 16 23 N -0.55 -19.94 10.68 -193.56 -2.07 -22.01 16 24 C 0.30 9.97 7.72 135.75 1.05 11.02 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 26 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 29 H 0.41 12.85 6.64 -92.71 -0.62 12.23 16 30 H 0.19 3.02 6.49 -2.91 -0.02 3.00 16 31 H 0.22 1.95 8.05 -2.91 -0.02 1.93 16 32 H 0.27 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -75.50 306.01 2.91 -72.59 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.57 Total: 13.23 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.66 Total: 23.41 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.60 Total: -121.94 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.07 Total: -29.81 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 35 Polarization: 0.40 SS G_CDS: -0.69 Total: -0.29 kcal Total: -75.50 2.91 -72.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.942 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds