Wall clock time and date at job start Tue Mar 31 2020 20:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 117.00350 * 2 1 4 4 C 1.38849 * 119.97407 * 0.02766 * 3 2 1 5 5 C 1.38342 * 120.24318 * 180.02562 * 4 3 2 6 6 Br 1.89093 * 119.90603 * 179.97438 * 5 4 3 7 7 C 1.38085 * 120.18859 * 359.95156 * 5 4 3 8 8 C 1.39619 * 119.95102 * 0.02562 * 7 5 4 9 9 C 1.47737 * 120.11970 * 180.02562 * 8 7 5 10 10 O 1.21594 * 120.00424 * 308.39919 * 9 8 7 11 11 N 1.34781 * 120.00110 * 128.39699 * 9 8 7 12 12 C 1.36871 * 120.00368 * 184.65252 * 11 9 8 13 13 H 1.08010 * 119.99688 * 13.82851 * 12 11 9 14 14 C 1.39046 * 120.00263 * 193.83521 * 12 11 9 15 15 N 1.31364 * 119.99712 * 14.62509 * 14 12 11 16 16 Si 1.86799 * 119.99860 * 194.62343 * 14 12 11 17 17 H 1.48506 * 109.47141 * 90.00258 * 16 14 12 18 18 H 1.48504 * 109.46850 * 209.99834 * 16 14 12 19 19 H 1.48499 * 109.47250 * 329.99770 * 16 14 12 20 20 C 1.46502 * 119.99916 * 4.65613 * 11 9 8 21 21 C 1.47188 * 109.47309 * 91.57872 * 20 11 9 22 22 N 4.38211 * 158.49862 * 149.18890 * 2 1 3 23 23 C 1.38433 * 119.97478 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47250 * 59.99671 * 1 2 3 25 25 H 1.08998 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46400 * 299.99738 * 1 2 3 27 27 H 1.08000 * 119.87704 * 0.02562 * 4 3 2 28 28 H 1.08009 * 120.02274 * 180.02562 * 7 5 4 29 29 H 0.97001 * 119.99502 * 180.02562 * 15 14 12 30 30 H 1.08996 * 109.47137 * 211.58414 * 20 11 9 31 31 H 1.09008 * 109.46901 * 331.57817 * 20 11 9 32 32 H 1.08000 * 120.09953 * 0.27337 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2894 2.3751 0.0006 5 6 1.9117 3.6106 0.0000 6 35 0.8719 5.1900 0.0001 7 6 3.2901 3.6938 -0.0001 8 6 4.0588 2.5283 -0.0002 9 6 5.5337 2.6130 0.0003 10 8 6.1035 3.3010 -0.8246 11 7 6.2478 1.9276 0.9151 12 6 7.6066 2.0798 0.9768 13 1 8.0823 2.8993 0.4585 14 6 8.3747 1.1793 1.7067 15 7 7.8556 0.0364 2.0940 16 14 10.1445 1.5948 2.1362 17 1 10.1840 2.3035 3.4406 18 1 10.9383 0.3432 2.2287 19 1 10.7181 2.4680 1.0808 20 6 5.5696 1.0195 1.8434 21 6 5.5337 -0.3344 1.2672 22 7 5.5061 -1.3795 0.8227 23 6 3.4286 1.2827 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.2110 2.3158 0.0015 28 1 3.7732 4.6599 -0.0001 29 1 8.3914 -0.5916 2.6035 30 1 6.1097 0.9974 2.7898 31 1 4.5512 1.3687 2.0143 32 1 4.0179 0.3776 -0.0054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:50 Heat of formation + Delta-G solvation = -7.954037 kcal Electronic energy + Delta-G solvation = -20934.273891 eV Core-core repulsion = 17521.227299 eV Total energy + Delta-G solvation = -3413.046592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67590 -40.44445 -38.31028 -37.70678 -36.20507 -34.13432 -33.24051 -31.52184 -30.55693 -29.29131 -28.20537 -27.04492 -24.36017 -23.42887 -21.33468 -19.92811 -19.08179 -18.21514 -17.92997 -17.36351 -17.22362 -16.73115 -16.55579 -15.96352 -15.54360 -15.26071 -14.86125 -14.57160 -14.35293 -14.14577 -13.81356 -13.40943 -13.32844 -13.06410 -13.00102 -12.88909 -12.51930 -12.38478 -12.29696 -12.12706 -12.01902 -11.50264 -11.37108 -11.21608 -10.70023 -10.10772 -9.94819 -9.39819 -8.46283 -6.05790 -0.29065 0.08159 0.43034 1.36884 1.46702 1.57835 1.70925 1.94271 2.19137 2.25604 2.32295 2.45108 2.92087 3.00897 3.53052 3.65692 3.77545 3.94667 4.03205 4.14076 4.34010 4.40326 4.43274 4.49426 4.76355 4.85872 4.87638 4.94331 5.15907 5.31834 5.40221 5.88577 6.27492 6.28701 6.96670 7.00349 7.19562 7.73826 8.54401 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.004160 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.362050 B = 6729.328505 C = 8160.816530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.330 6.330 3 C 0.139 3.861 4 C -0.155 4.155 5 C -0.052 4.052 6 Br -0.020 7.020 7 C -0.090 4.090 8 C -0.065 4.065 9 C 0.480 3.520 10 O -0.608 6.608 11 N -0.437 5.437 12 C -0.338 4.338 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.893 5.893 16 Si 0.999 3.001 17 H -0.257 1.257 18 H -0.283 1.283 19 H -0.275 1.275 20 C 0.223 3.777 21 C 0.267 3.733 22 N -0.505 5.505 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.175 0.825 28 H 0.139 0.861 29 H 0.279 0.721 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.958 6.452 2.340 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.131 4.131 6 Br 0.065 6.935 7 C -0.111 4.111 8 C -0.070 4.070 9 C 0.270 3.730 10 O -0.495 6.495 11 N -0.154 5.154 12 C -0.465 4.465 13 H 0.110 0.890 14 C -0.197 4.197 15 N -0.532 5.532 16 Si 0.822 3.178 17 H -0.182 1.182 18 H -0.209 1.209 19 H -0.200 1.200 20 C 0.097 3.903 21 C -0.049 4.049 22 N -0.186 5.186 23 C -0.156 4.156 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.095 0.905 27 H 0.192 0.808 28 H 0.157 0.843 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.939 5.471 1.424 19.765 hybrid contribution 1.427 -0.088 0.155 1.438 sum -17.512 5.382 1.579 18.389 Atomic orbital electron populations 1.23513 0.75574 1.06090 1.03067 1.86163 1.24256 1.25613 1.88293 1.18615 0.90883 0.85242 0.96041 1.21464 1.01828 0.89246 1.05037 1.21453 0.93327 0.93040 1.05304 1.96720 1.68508 1.30669 1.97579 1.21016 0.91906 0.98097 1.00060 1.19579 0.92592 0.93532 1.01257 1.18406 0.86929 0.85096 0.82525 1.90624 1.72321 1.46415 1.40099 1.43717 1.07080 1.36174 1.28457 1.19822 0.81541 1.12591 1.32551 0.89035 1.26053 1.04205 0.93430 0.96039 1.69737 1.39386 1.07067 1.36979 0.84828 0.76181 0.77548 0.79216 1.18174 1.20880 1.19972 1.19097 0.98895 0.78250 0.94077 1.29241 0.88617 0.94898 0.92172 1.80896 1.13949 1.13668 1.10097 1.20804 0.93113 0.97245 1.04439 0.90976 0.86265 0.90521 0.80810 0.84329 0.91004 0.85081 0.86542 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -8.62 10.49 -92.52 -0.97 -9.59 16 3 C 0.14 3.94 6.68 22.46 0.15 4.09 16 4 C -0.16 -3.54 8.77 22.44 0.20 -3.34 16 5 C -0.05 -1.31 6.21 22.26 0.14 -1.17 16 6 Br -0.02 -0.41 33.69 -20.37 -0.69 -1.10 16 7 C -0.09 -2.87 9.48 22.57 0.21 -2.66 16 8 C -0.07 -2.48 4.80 -20.10 -0.10 -2.58 16 9 C 0.48 22.97 7.15 86.75 0.62 23.59 16 10 O -0.61 -33.59 16.70 -4.01 -0.07 -33.66 16 11 N -0.44 -21.04 2.58 -648.82 -1.67 -22.72 16 12 C -0.34 -17.63 9.41 84.10 0.79 -16.83 16 13 H 0.09 5.08 7.32 -2.91 -0.02 5.06 16 14 C 0.00 0.23 5.10 84.96 0.43 0.66 16 15 N -0.89 -43.94 8.60 21.68 0.19 -43.75 16 16 Si 1.00 39.72 29.58 68.60 2.03 41.75 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 18 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 C 0.22 9.21 4.75 84.57 0.40 9.61 16 21 C 0.27 12.19 10.37 89.44 0.93 13.12 16 22 N -0.50 -24.63 18.44 20.00 0.37 -24.26 16 23 C -0.14 -4.83 7.59 22.64 0.17 -4.66 16 24 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 25 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 0.81 7.66 -2.38 -0.02 0.79 16 27 H 0.17 2.66 6.28 -2.91 -0.02 2.65 16 28 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 30 H 0.13 5.41 6.47 -2.39 -0.02 5.40 16 31 H 0.12 3.96 5.87 -2.38 -0.01 3.95 16 32 H 0.12 4.81 4.76 -2.91 -0.01 4.79 16 Total: -1.00 -65.96 302.04 5.44 -60.52 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.19 Total: 11.71 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 5.06 Total: 21.10 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.12 Total: -90.73 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.04 Total: -43.25 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -65.96 5.44 -60.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.570 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds