Wall clock time and date at job start Tue Mar 31 2020 20:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99440 * 2 1 4 4 H 1.48505 * 109.46856 * 239.99784 * 3 2 1 5 5 H 1.48498 * 109.47618 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00159 * 3 2 1 7 7 C 1.38946 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00193 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99646 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47078 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.45653 * 303.85530 * 13 12 10 15 15 C 1.51392 * 110.50942 * 66.45478 * 13 12 10 16 16 O 1.21293 * 126.43957 * 298.60818 * 15 13 12 17 17 N 1.34374 * 107.11886 * 118.65037 * 15 13 12 18 18 C 1.39562 * 112.23794 * 359.97438 * 17 15 13 19 19 C 1.39365 * 130.81027 * 180.02562 * 18 17 15 20 20 C 1.37933 * 120.14738 * 179.97438 * 19 18 17 21 21 C 1.38384 * 120.36046 * 0.02562 * 20 19 18 22 22 Br 1.89097 * 120.09703 * 179.97438 * 21 20 19 23 23 C 1.38477 * 119.80747 * 359.97438 * 21 20 19 24 24 C 1.37678 * 119.90551 * 0.02562 * 23 21 20 25 25 H 0.96993 * 120.00153 * 359.97438 * 1 2 3 26 26 H 0.97006 * 120.00179 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47221 * 59.99668 * 12 10 9 28 28 H 1.09004 * 109.46708 * 300.00324 * 12 10 9 29 29 H 0.96997 * 123.87952 * 180.02562 * 17 15 13 30 30 H 1.08003 * 119.93026 * 359.72004 * 19 18 17 31 31 H 1.08002 * 119.82089 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.04903 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 6 2.2383 -6.0257 -0.0027 14 1 2.9182 -5.9452 -0.8507 15 6 3.0135 -6.0614 1.2972 16 8 3.7446 -5.1928 1.7241 17 7 2.7401 -7.2365 1.8887 18 6 1.8590 -8.0143 1.1361 19 6 1.3241 -9.2780 1.3793 20 6 0.4583 -9.8504 0.4708 21 6 0.1144 -9.1765 -0.6879 22 35 -1.0727 -9.9684 -1.9287 23 6 0.6421 -7.9205 -0.9362 24 6 1.5065 -7.3478 -0.0304 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 0.0002 27 1 0.6170 -4.9201 -0.8919 28 1 0.6177 -4.9212 0.8880 29 1 3.1117 -7.5121 2.7412 30 1 1.5912 -9.8122 2.2792 31 1 0.0471 -10.8301 0.6644 32 1 0.3761 -7.3910 -1.8390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931297938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:34 Heat of formation + Delta-G solvation = -33.222619 kcal Electronic energy + Delta-G solvation = -20385.730366 eV Core-core repulsion = 16971.588045 eV Total energy + Delta-G solvation = -3414.142320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64151 -38.56527 -37.87993 -35.73361 -34.06184 -33.20148 -31.69047 -31.17860 -30.07781 -28.33798 -26.40953 -24.31476 -22.64207 -21.60334 -20.82207 -19.02313 -18.02258 -17.80934 -16.79918 -16.12698 -15.84008 -15.41116 -14.92673 -14.51529 -14.40818 -14.14303 -13.84786 -13.44717 -13.32355 -12.99873 -12.54926 -12.14613 -11.88239 -11.64951 -11.57172 -11.42702 -11.11141 -10.97325 -10.47644 -10.39667 -10.22782 -10.15576 -9.73537 -9.40456 -9.22674 -8.32003 -8.10283 -7.89740 -6.36409 -3.76433 0.77558 0.99218 1.43807 2.60981 2.94366 3.24057 3.29065 3.34168 3.43219 3.95320 4.07095 4.20035 4.36980 4.56406 4.80574 4.94003 5.01188 5.09566 5.28801 5.32412 5.55583 5.59607 5.71939 5.85659 5.93575 6.02933 6.10623 6.31858 6.39303 6.76363 6.83693 7.60785 8.10218 8.19192 8.66476 9.23389 9.59220 10.11258 10.81470 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002937 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.306487 B = 9531.849928 C =10783.625109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.434 3.566 11 O -0.567 6.567 12 C -0.111 4.111 13 C -0.057 4.057 14 H 0.131 0.869 15 C 0.527 3.473 16 O -0.441 6.441 17 N -0.670 5.670 18 C 0.173 3.827 19 C -0.143 4.143 20 C -0.055 4.055 21 C -0.121 4.121 22 Br -0.051 7.051 23 C -0.031 4.031 24 C -0.132 4.132 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.410 0.590 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -24.091 -0.974 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.219 3.781 11 O -0.450 6.450 12 C -0.152 4.152 13 C -0.079 4.079 14 H 0.149 0.851 15 C 0.313 3.687 16 O -0.308 6.308 17 N -0.315 5.315 18 C 0.074 3.926 19 C -0.165 4.165 20 C -0.076 4.076 21 C -0.201 4.201 22 Br 0.034 6.966 23 C -0.052 4.052 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.248 0.752 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.067 -23.541 -1.258 23.923 hybrid contribution 0.118 0.778 0.765 1.098 sum -3.949 -22.763 -0.493 23.108 Atomic orbital electron populations 1.69603 1.05896 1.28155 1.50891 1.25238 0.95618 0.99640 0.97478 0.85936 0.78760 0.80560 0.79069 1.19915 1.21022 1.19956 1.19666 0.93360 0.82250 1.47326 0.87967 1.41815 1.09078 1.04524 1.64668 1.19735 0.88499 0.84757 0.85071 1.90623 1.13196 1.86884 1.54347 1.21342 0.97394 0.92434 1.03986 1.20403 0.97175 0.91465 0.98866 0.85099 1.20547 0.81603 0.80255 0.86290 1.90941 1.34131 1.37934 1.67807 1.44071 1.45294 1.18464 1.23663 1.18297 0.90925 0.92158 0.91269 1.20301 1.01063 0.93575 1.01598 1.20757 0.95762 0.99447 0.91592 1.21488 1.03643 0.97652 0.97357 1.96710 1.60411 1.81859 1.57617 1.20201 0.93666 0.92672 0.98619 1.19894 1.01215 0.97059 0.95435 0.91905 0.77535 0.88832 0.90113 0.75186 0.84838 0.84453 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C 0.43 10.27 7.46 -10.98 -0.08 10.19 16 11 O -0.57 -15.45 13.19 -17.23 -0.23 -15.68 16 12 C -0.11 -1.88 5.24 -27.89 -0.15 -2.03 16 13 C -0.06 -0.89 2.63 -92.37 -0.24 -1.13 16 14 H 0.13 2.09 8.02 -51.93 -0.42 1.67 16 15 C 0.53 9.02 7.81 -10.83 -0.08 8.94 16 16 O -0.44 -9.80 15.55 -17.23 -0.27 -10.07 16 17 N -0.67 -8.26 5.88 -9.69 -0.06 -8.32 16 18 C 0.17 1.92 7.11 -83.68 -0.60 1.33 16 19 C -0.14 -1.21 10.07 -39.27 -0.40 -1.61 16 20 C -0.06 -0.46 9.76 -39.64 -0.39 -0.84 16 21 C -0.12 -1.16 6.23 -39.44 -0.25 -1.40 16 22 Br -0.05 -0.46 33.71 -68.01 -2.29 -2.75 16 23 C -0.03 -0.33 9.78 -39.70 -0.39 -0.72 16 24 C -0.13 -1.60 5.67 -104.37 -0.59 -2.19 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.41 3.98 8.96 -40.82 -0.37 3.61 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -33.68 305.30 -8.73 -42.41 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -2.73 Total: 9.65 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.40 Total: 2.44 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.61 Total: -47.09 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.50 Total: -25.75 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.68 -8.73 -42.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.183 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds