Wall clock time and date at job start Tue Mar 31 2020 20:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99440 * 2 1 4 4 H 1.48505 * 109.46856 * 239.99784 * 3 2 1 5 5 H 1.48498 * 109.47618 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00159 * 3 2 1 7 7 C 1.38946 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00193 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99646 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.52993 * 109.47078 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.45653 * 303.85530 * 13 12 10 15 15 C 1.51392 * 110.50942 * 66.45478 * 13 12 10 16 16 O 1.21293 * 126.43957 * 298.60818 * 15 13 12 17 17 N 1.34374 * 107.11886 * 118.65037 * 15 13 12 18 18 C 1.39562 * 112.23794 * 359.97438 * 17 15 13 19 19 C 1.39365 * 130.81027 * 180.02562 * 18 17 15 20 20 C 1.37933 * 120.14738 * 179.97438 * 19 18 17 21 21 C 1.38384 * 120.36046 * 0.02562 * 20 19 18 22 22 Br 1.89097 * 120.09703 * 179.97438 * 21 20 19 23 23 C 1.38477 * 119.80747 * 359.97438 * 21 20 19 24 24 C 1.37678 * 119.90551 * 0.02562 * 23 21 20 25 25 H 0.96993 * 120.00153 * 359.97438 * 1 2 3 26 26 H 0.97006 * 120.00179 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47221 * 59.99668 * 12 10 9 28 28 H 1.09004 * 109.46708 * 300.00324 * 12 10 9 29 29 H 0.96997 * 123.87952 * 180.02562 * 17 15 13 30 30 H 1.08003 * 119.93026 * 359.72004 * 19 18 17 31 31 H 1.08002 * 119.82089 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.04903 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 6 2.2383 -6.0257 -0.0027 14 1 2.9182 -5.9452 -0.8507 15 6 3.0135 -6.0614 1.2972 16 8 3.7446 -5.1928 1.7241 17 7 2.7401 -7.2365 1.8887 18 6 1.8590 -8.0143 1.1361 19 6 1.3241 -9.2780 1.3793 20 6 0.4583 -9.8504 0.4708 21 6 0.1144 -9.1765 -0.6879 22 35 -1.0727 -9.9684 -1.9287 23 6 0.6421 -7.9205 -0.9362 24 6 1.5065 -7.3478 -0.0304 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 0.0002 27 1 0.6170 -4.9201 -0.8919 28 1 0.6177 -4.9212 0.8880 29 1 3.1117 -7.5121 2.7412 30 1 1.5912 -9.8122 2.2792 31 1 0.0471 -10.8301 0.6644 32 1 0.3761 -7.3910 -1.8390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931297938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:33 Heat of formation + Delta-G solvation = -55.854046 kcal Electronic energy + Delta-G solvation = -20386.711738 eV Core-core repulsion = 16971.588045 eV Total energy + Delta-G solvation = -3415.123693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.71710 -40.03526 -39.40312 -36.84776 -36.01705 -34.48843 -33.22093 -32.47102 -31.13232 -29.21626 -27.89971 -26.10644 -23.50022 -22.52408 -22.17661 -20.76340 -19.85484 -18.96905 -18.05697 -17.57236 -17.07342 -16.76523 -16.30202 -16.04899 -15.66742 -15.63418 -15.02237 -14.78353 -14.50998 -14.26979 -13.93773 -13.47695 -13.42062 -13.07436 -12.93249 -12.68366 -12.60209 -12.41990 -12.14376 -12.02676 -11.49370 -11.20129 -11.08442 -11.04675 -10.31316 -9.97319 -9.95917 -9.01802 -8.45088 -5.92923 -0.08397 0.22588 0.69950 1.38643 1.39295 1.40306 1.51409 1.93282 2.09459 2.30244 2.59208 3.01758 3.08429 3.22842 3.49433 3.76091 3.87566 4.11444 4.13579 4.26673 4.37998 4.53460 4.65425 4.78382 4.88281 4.96766 5.08521 5.18945 5.42260 5.46201 5.76162 5.89524 6.00759 6.61798 7.00487 7.15198 7.58013 8.15648 8.72380 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002937 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.306487 B = 9531.849928 C =10783.625109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.332 4.332 8 H 0.075 0.925 9 N -0.576 5.576 10 C 0.431 3.569 11 O -0.605 6.605 12 C -0.097 4.097 13 C -0.057 4.057 14 H 0.119 0.881 15 C 0.521 3.479 16 O -0.509 6.509 17 N -0.653 5.653 18 C 0.157 3.843 19 C -0.124 4.124 20 C -0.047 4.047 21 C -0.122 4.122 22 Br -0.043 7.043 23 C -0.035 4.035 24 C -0.139 4.139 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.423 0.577 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 -26.333 -0.887 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.462 4.462 8 H 0.093 0.907 9 N -0.214 5.214 10 C 0.218 3.782 11 O -0.490 6.490 12 C -0.137 4.137 13 C -0.079 4.079 14 H 0.136 0.864 15 C 0.308 3.692 16 O -0.381 6.381 17 N -0.298 5.298 18 C 0.058 3.942 19 C -0.145 4.145 20 C -0.067 4.067 21 C -0.203 4.203 22 Br 0.042 6.958 23 C -0.056 4.056 24 C -0.143 4.143 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.263 0.737 30 H 0.185 0.815 31 H 0.185 0.815 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.704 -25.862 -1.177 26.510 hybrid contribution 0.542 1.278 0.699 1.554 sum -5.161 -24.584 -0.478 25.125 Atomic orbital electron populations 1.69661 1.06701 1.29250 1.50618 1.25989 0.96556 1.02236 0.96458 0.85036 0.77817 0.76904 0.78848 1.19588 1.19223 1.20147 1.19602 0.92577 0.84210 1.49782 0.90697 1.41890 1.09182 1.04631 1.65703 1.20864 0.88446 0.86292 0.82607 1.90601 1.15374 1.87825 1.55236 1.21265 0.97365 0.89030 1.06056 1.20265 0.96946 0.92866 0.97799 0.86364 1.20789 0.80866 0.80663 0.86886 1.90900 1.37124 1.40527 1.69535 1.43743 1.44927 1.17159 1.23972 1.18502 0.91506 0.93252 0.90898 1.20655 0.99390 0.92027 1.02456 1.21155 0.94745 1.00315 0.90520 1.21670 1.03337 0.97278 0.97965 1.96741 1.60019 1.81484 1.57522 1.20284 0.93420 0.93272 0.98583 1.19584 1.02377 0.95534 0.96834 0.91337 0.77043 0.85716 0.88720 0.73677 0.81510 0.81504 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.90 13.05 21.66 0.28 -50.61 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 3 Si 0.99 44.47 29.55 68.60 2.03 46.50 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.33 -19.61 9.68 84.04 0.81 -18.79 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -30.60 5.29 -306.98 -1.62 -32.23 16 10 C 0.43 21.11 7.46 87.66 0.65 21.76 16 11 O -0.61 -34.75 13.19 18.71 0.25 -34.50 16 12 C -0.10 -3.29 5.24 29.85 0.16 -3.13 16 13 C -0.06 -1.77 2.63 -11.93 -0.03 -1.80 16 14 H 0.12 3.93 8.02 -2.39 -0.02 3.91 16 15 C 0.52 18.31 7.81 87.94 0.69 18.99 16 16 O -0.51 -23.90 15.55 18.71 0.29 -23.61 16 17 N -0.65 -15.53 5.88 -303.18 -1.78 -17.31 16 18 C 0.16 3.10 7.11 38.34 0.27 3.37 16 19 C -0.12 -1.57 10.07 22.47 0.23 -1.35 16 20 C -0.05 -0.57 9.76 22.23 0.22 -0.35 16 21 C -0.12 -1.93 6.23 22.36 0.14 -1.79 16 22 Br -0.04 -0.64 33.71 -20.37 -0.69 -1.33 16 23 C -0.04 -0.67 9.78 22.19 0.22 -0.45 16 24 C -0.14 -3.15 5.67 -19.70 -0.11 -3.26 16 25 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.40 19.83 7.90 -92.70 -0.73 19.10 16 27 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 29 H 0.42 7.74 8.96 -92.71 -0.83 6.91 16 30 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -76.55 305.30 2.10 -74.45 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.36 Total: 25.69 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 3.71 Total: 12.95 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.12 Total: -100.15 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: 0.54 Total: -58.12 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.33 kcal Total: -76.55 2.10 -74.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931297938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.598 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds