Wall clock time and date at job start Tue Mar 31 2020 20:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47562 * 270.00166 * 3 2 1 5 5 H 1.48502 * 109.47000 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.47238 * 149.99863 * 3 2 1 7 7 C 1.38949 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00146 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00301 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99432 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00352 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47206 * 180.02562 * 12 10 9 14 14 H 1.09008 * 110.56053 * 307.67098 * 13 12 10 15 15 C 1.51395 * 110.51147 * 70.34247 * 13 12 10 16 16 O 1.21291 * 126.43903 * 298.63360 * 15 13 12 17 17 N 1.34371 * 107.12004 * 118.64969 * 15 13 12 18 18 C 1.39569 * 112.23688 * 0.02562 * 17 15 13 19 19 C 1.38908 * 110.22386 * 359.97438 * 18 17 15 20 20 C 1.37660 * 120.80888 * 179.97438 * 19 18 17 21 21 C 1.38439 * 119.93327 * 359.74788 * 20 19 18 22 22 C 1.38254 * 119.83259 * 0.51051 * 21 20 19 23 23 C 1.38068 * 120.36171 * 359.48490 * 22 21 20 24 24 Br 1.89093 * 119.93990 * 180.28025 * 23 22 21 25 25 H 0.97003 * 119.99798 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00488 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47443 * 60.00651 * 12 10 9 28 28 H 1.09002 * 109.47322 * 299.99848 * 12 10 9 29 29 H 0.96994 * 123.87914 * 180.02562 * 17 15 13 30 30 H 1.08005 * 120.03502 * 180.02562 * 20 19 18 31 31 H 1.07995 * 120.08255 * 180.24807 * 21 20 19 32 32 H 1.08002 * 119.82121 * 179.77061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 6 2.2378 -6.0259 -0.0027 14 1 2.9607 -5.9112 -0.8105 15 6 2.9451 -6.1197 1.3326 16 8 3.6520 -5.2715 1.8346 17 7 2.6428 -7.3194 1.8569 18 6 1.8034 -8.0627 1.0257 19 6 1.5104 -7.3447 -0.1268 20 6 0.6962 -7.8767 -1.1010 21 6 0.1632 -9.1441 -0.9396 22 6 0.4426 -9.8671 0.2053 23 6 1.2590 -9.3362 1.1840 24 35 1.6396 -10.3386 2.7416 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6167 -4.9201 -0.8920 28 1 0.6173 -4.9213 0.8880 29 1 2.9703 -7.6328 2.7144 30 1 0.4770 -7.3076 -1.9924 31 1 -0.4726 -9.5654 -1.7042 32 1 0.0237 -10.8544 0.3327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:56 Heat of formation + Delta-G solvation = -57.218197 kcal Electronic energy + Delta-G solvation = -20462.932342 eV Core-core repulsion = 17047.749495 eV Total energy + Delta-G solvation = -3415.182847 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.74819 -40.03178 -39.42494 -36.78697 -36.02678 -34.70475 -33.25825 -32.60912 -30.34699 -29.79970 -27.91795 -26.09623 -23.50305 -22.47687 -22.17651 -20.77535 -19.85859 -18.98584 -18.07734 -17.63747 -17.08278 -16.79331 -16.31083 -16.04264 -15.68826 -15.62548 -14.91493 -14.80573 -14.53122 -14.36276 -13.93089 -13.47055 -13.39423 -13.11200 -12.93201 -12.70516 -12.40723 -12.14498 -12.07812 -11.96719 -11.74055 -11.49076 -11.33300 -11.10821 -10.32089 -9.97376 -9.74501 -9.10948 -8.45285 -5.92882 0.00758 0.12457 0.57830 1.37434 1.40150 1.40964 1.53596 1.84505 2.09200 2.30463 2.62191 3.00628 3.08181 3.23089 3.49769 3.77390 3.92626 3.99832 4.17130 4.34638 4.39007 4.60148 4.66045 4.76121 4.83544 4.96131 5.28393 5.42763 5.43348 5.52951 5.66510 5.87677 6.01061 6.61881 6.90852 7.15241 7.58161 8.15737 8.72335 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027167 B = 0.002836 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.420856 B = 9870.044805 C =10369.545172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.278 1.278 7 C -0.331 4.331 8 H 0.074 0.926 9 N -0.575 5.575 10 C 0.432 3.568 11 O -0.611 6.611 12 C -0.095 4.095 13 C -0.055 4.055 14 H 0.123 0.877 15 C 0.522 3.478 16 O -0.513 6.513 17 N -0.657 5.657 18 C 0.157 3.843 19 C -0.136 4.136 20 C -0.043 4.043 21 C -0.120 4.120 22 C -0.054 4.054 23 C -0.125 4.125 24 Br -0.051 7.051 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.415 0.585 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -26.220 -0.758 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.461 4.461 8 H 0.092 0.908 9 N -0.213 5.213 10 C 0.219 3.781 11 O -0.496 6.496 12 C -0.135 4.135 13 C -0.077 4.077 14 H 0.140 0.860 15 C 0.309 3.691 16 O -0.386 6.386 17 N -0.301 5.301 18 C 0.057 3.943 19 C -0.140 4.140 20 C -0.061 4.061 21 C -0.140 4.140 22 C -0.074 4.074 23 C -0.208 4.208 24 Br 0.034 6.966 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.254 0.746 30 H 0.179 0.821 31 H 0.194 0.806 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.555 -25.838 0.063 26.236 hybrid contribution 0.393 1.203 0.577 1.391 sum -4.162 -24.635 0.641 24.992 Atomic orbital electron populations 1.69664 1.06662 1.29178 1.50638 1.25979 0.96562 1.02207 0.96470 0.84979 0.77757 0.77135 0.78770 1.19266 1.19452 1.20329 1.19628 0.92560 0.84222 1.49703 0.90760 1.41883 1.09214 1.04607 1.65582 1.20874 0.88391 0.86341 0.82454 1.90584 1.15586 1.87888 1.55556 1.21265 0.97260 0.88744 1.06264 1.20284 0.97621 0.93227 0.96521 0.85980 1.20926 0.80014 0.80290 0.87835 1.90876 1.37531 1.42876 1.67312 1.43849 1.47338 1.16572 1.22334 1.17962 0.93015 0.92050 0.91226 1.19797 1.03421 0.94608 0.96161 1.20862 0.92190 0.95625 0.97421 1.21515 1.00964 0.93356 0.98153 1.21288 0.93789 1.00957 0.91369 1.21208 1.08232 0.93594 0.97718 1.96727 1.94643 1.71283 1.33925 0.91335 0.76962 0.84864 0.89015 0.74559 0.82076 0.80569 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 44.31 29.55 68.60 2.03 46.34 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 8 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.58 -30.27 5.29 -306.98 -1.62 -31.89 16 10 C 0.43 21.01 7.48 87.66 0.66 21.66 16 11 O -0.61 -35.04 13.54 17.07 0.23 -34.80 16 12 C -0.10 -3.16 5.21 29.85 0.16 -3.01 16 13 C -0.05 -1.70 2.59 -11.93 -0.03 -1.73 16 14 H 0.12 4.04 7.90 -2.38 -0.02 4.02 16 15 C 0.52 19.23 7.83 87.94 0.69 19.92 16 16 O -0.51 -24.80 15.97 17.10 0.27 -24.53 16 17 N -0.66 -18.30 5.85 -303.15 -1.77 -20.08 16 18 C 0.16 3.61 6.88 38.35 0.26 3.88 16 19 C -0.14 -3.01 5.67 -19.70 -0.11 -3.12 16 20 C -0.04 -0.61 10.04 22.18 0.22 -0.38 16 21 C -0.12 -1.18 10.07 22.32 0.22 -0.96 16 22 C -0.05 -0.65 9.75 22.23 0.22 -0.44 16 23 C -0.13 -2.26 6.25 22.51 0.14 -2.12 16 24 Br -0.05 -0.87 33.52 -20.37 -0.68 -1.55 16 25 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 27 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.09 2.89 8.12 -2.39 -0.02 2.87 16 29 H 0.42 10.42 8.82 -92.71 -0.82 9.60 16 30 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -77.55 305.55 2.10 -75.46 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.35 Total: 26.42 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 3.71 Total: 14.80 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -3.11 Total: -102.13 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: 0.50 Total: -59.33 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -0.68 Total: -1.55 kcal Total: -77.55 2.10 -75.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds