Wall clock time and date at job start Tue Mar 31 2020 20:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 120.00206 * 2 1 4 4 H 1.48509 * 109.46936 * 239.99941 * 3 2 1 5 5 H 1.48506 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47485 * 120.00009 * 3 2 1 7 7 C 1.38947 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99766 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99941 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00355 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99970 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47152 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.45634 * 56.14390 * 13 12 10 15 15 C 1.51394 * 110.50693 * 293.54719 * 13 12 10 16 16 O 1.21284 * 126.44319 * 61.33188 * 15 13 12 17 17 N 1.34378 * 107.11674 * 241.35294 * 15 13 12 18 18 C 1.39571 * 112.23825 * 0.02562 * 17 15 13 19 19 C 1.38906 * 110.22617 * 359.97438 * 18 17 15 20 20 C 1.37657 * 120.81263 * 179.97438 * 19 18 17 21 21 C 1.38435 * 119.92925 * 0.02562 * 20 19 18 22 22 C 1.38247 * 119.83666 * 0.02562 * 21 20 19 23 23 C 1.38065 * 120.36380 * 359.97337 * 22 21 20 24 24 Br 1.89097 * 119.94509 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99954 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.46941 * 59.99684 * 12 10 9 28 28 H 1.08996 * 109.46927 * 299.99732 * 12 10 9 29 29 H 0.97002 * 123.87784 * 180.02562 * 17 15 13 30 30 H 1.07998 * 120.03425 * 180.29486 * 20 19 18 31 31 H 1.08003 * 120.08003 * 180.02562 * 21 20 19 32 32 H 1.08001 * 119.82253 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6962 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 6 2.2377 -6.0260 0.0016 14 1 2.9177 -5.9454 0.8497 15 6 3.0130 -6.0616 -1.2983 16 8 3.7433 -5.1927 -1.7256 17 7 2.7394 -7.2367 -1.8899 18 6 1.8582 -8.0145 -1.1372 19 6 1.5057 -7.3479 0.0294 20 6 0.6414 -7.9205 0.9350 21 6 0.1134 -9.1760 0.6872 22 6 0.4570 -9.8506 -0.4696 23 6 1.3236 -9.2788 -1.3797 24 35 1.7849 -10.2117 -2.9586 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6165 -4.9209 -0.8885 28 1 0.6173 -4.9205 0.8914 29 1 3.1116 -7.5126 -2.7421 30 1 0.3721 -7.3891 1.8358 31 1 -0.5652 -9.6274 1.3958 32 1 0.0446 -10.8299 -0.6630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:00 Heat of formation + Delta-G solvation = -56.176035 kcal Electronic energy + Delta-G solvation = -20488.124491 eV Core-core repulsion = 17072.986836 eV Total energy + Delta-G solvation = -3415.137655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.73546 -40.02666 -39.39252 -36.76794 -36.01477 -34.69388 -33.24763 -32.60296 -30.33902 -29.79235 -27.90333 -26.08594 -23.49239 -22.46617 -22.17727 -20.74559 -19.84724 -18.97103 -18.09039 -17.58038 -17.08135 -16.77790 -16.30517 -16.04532 -15.67825 -15.61248 -14.90389 -14.78856 -14.49887 -14.32983 -13.92486 -13.46439 -13.41501 -13.09952 -12.93572 -12.68357 -12.41544 -12.13509 -12.06362 -11.95846 -11.73508 -11.48853 -11.33034 -11.07748 -10.28305 -9.96264 -9.74140 -9.09895 -8.44640 -5.92151 0.01761 0.13094 0.58293 1.39236 1.40442 1.43121 1.51497 1.86160 2.10684 2.30652 2.62875 3.02265 3.08611 3.23599 3.51734 3.78327 3.93427 4.00476 4.17418 4.35103 4.39610 4.60585 4.67070 4.76936 4.83861 4.96894 5.28930 5.42901 5.43735 5.54657 5.68051 5.88617 6.01551 6.62798 6.93801 7.16071 7.59197 8.17183 8.72809 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.002861 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.651065 B = 9785.708791 C =10291.309487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.989 3.011 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.074 0.926 9 N -0.576 5.576 10 C 0.430 3.570 11 O -0.606 6.606 12 C -0.095 4.095 13 C -0.054 4.054 14 H 0.123 0.877 15 C 0.520 3.480 16 O -0.509 6.509 17 N -0.658 5.658 18 C 0.157 3.843 19 C -0.136 4.136 20 C -0.042 4.042 21 C -0.121 4.121 22 C -0.054 4.054 23 C -0.126 4.126 24 Br -0.052 7.052 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.092 0.908 28 H 0.133 0.867 29 H 0.415 0.585 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -26.185 0.000 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.092 0.908 9 N -0.214 5.214 10 C 0.217 3.783 11 O -0.491 6.491 12 C -0.136 4.136 13 C -0.076 4.076 14 H 0.141 0.859 15 C 0.307 3.693 16 O -0.381 6.381 17 N -0.303 5.303 18 C 0.058 3.942 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.074 4.074 23 C -0.208 4.208 24 Br 0.034 6.966 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.110 0.890 28 H 0.151 0.849 29 H 0.254 0.746 30 H 0.180 0.820 31 H 0.194 0.806 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.467 -25.762 -0.776 26.158 hybrid contribution 0.422 1.216 -0.552 1.401 sum -4.045 -24.545 -1.328 24.912 Atomic orbital electron populations 1.69657 1.06649 1.29222 1.50648 1.25970 0.96561 1.02180 0.96502 0.85049 0.77831 0.76992 0.78812 1.20305 1.19200 1.19540 1.19593 0.92551 0.84258 1.49747 0.90789 1.41878 1.09187 1.04590 1.65740 1.20907 0.88456 0.86359 0.82556 1.90605 1.15476 1.87843 1.55217 1.21273 0.97273 0.88735 1.06292 1.20279 0.96953 0.93118 0.97244 0.85934 1.20941 0.80923 0.80253 0.87140 1.90890 1.37213 1.40338 1.69639 1.43884 1.44995 1.17562 1.23813 1.17973 0.92375 0.91759 0.92114 1.19797 1.02988 0.95001 0.96230 1.20862 0.92042 0.95112 0.98018 1.21512 1.01077 0.93897 0.97577 1.21282 0.93400 1.00669 0.92061 1.21208 1.07588 0.94244 0.97797 1.96725 1.92913 1.74939 1.32071 0.91345 0.76990 0.88964 0.84889 0.74639 0.82005 0.80574 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.33 -19.53 9.68 84.04 0.81 -18.72 16 8 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.58 -30.34 5.29 -306.98 -1.62 -31.96 16 10 C 0.43 20.90 7.46 87.66 0.65 21.56 16 11 O -0.61 -34.80 13.19 18.73 0.25 -34.55 16 12 C -0.10 -3.16 5.24 29.85 0.16 -3.00 16 13 C -0.05 -1.68 2.63 -11.93 -0.03 -1.71 16 14 H 0.12 3.97 8.02 -2.39 -0.02 3.95 16 15 C 0.52 19.28 7.81 87.94 0.69 19.97 16 16 O -0.51 -24.79 15.54 18.75 0.29 -24.50 16 17 N -0.66 -18.53 5.85 -303.15 -1.77 -20.30 16 18 C 0.16 3.65 6.88 38.35 0.26 3.91 16 19 C -0.14 -3.01 5.67 -19.70 -0.11 -3.12 16 20 C -0.04 -0.59 10.04 22.18 0.22 -0.37 16 21 C -0.12 -1.19 10.07 22.32 0.22 -0.97 16 22 C -0.05 -0.66 9.75 22.23 0.22 -0.44 16 23 C -0.13 -2.29 6.25 22.51 0.14 -2.15 16 24 Br -0.05 -0.89 33.52 -20.37 -0.68 -1.58 16 25 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 27 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.41 10.56 8.82 -92.71 -0.82 9.75 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -77.70 304.94 2.13 -75.57 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.35 Total: 26.44 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 3.70 Total: 14.73 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -3.11 Total: -102.54 kcal Atomic # 8 Polarization: -59.59 SS G_CDS: 0.54 Total: -59.05 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.68 Total: -1.58 kcal Total: -77.70 2.13 -75.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.395 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds