Wall clock time and date at job start Tue Mar 31 2020 21:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00291 * 2 1 4 4 H 1.48505 * 109.47160 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.47152 * 29.99857 * 3 2 1 6 6 H 1.48498 * 109.47603 * 150.00119 * 3 2 1 7 7 C 1.38802 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00292 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99783 * 179.97438 * 11 10 9 14 14 C 1.47080 * 120.88443 * 179.97438 * 13 11 10 15 15 C 1.53235 * 108.52157 * 128.83556 * 14 13 11 16 16 N 1.46907 * 109.33899 * 53.83377 * 15 14 13 17 17 C 1.46899 * 111.00074 * 172.74273 * 16 15 14 18 18 C 1.50704 * 109.46782 * 76.24568 * 17 16 15 19 19 Cl 1.73603 * 120.00015 * 293.51917 * 18 17 16 20 20 C 1.31288 * 119.99913 * 113.52266 * 18 17 16 21 21 Cl 1.73603 * 120.00072 * 359.97438 * 20 18 17 22 22 C 1.46899 * 111.26688 * 296.89533 * 16 15 14 23 23 C 1.47080 * 120.88177 * 0.02562 * 13 11 10 24 24 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46930 * 59.99899 * 10 9 7 26 26 H 1.09003 * 109.46817 * 299.99639 * 10 9 7 27 27 H 1.09007 * 109.62615 * 9.13103 * 14 13 11 28 28 H 1.08994 * 109.79548 * 248.64456 * 14 13 11 29 29 H 1.08997 * 109.49826 * 173.79230 * 15 14 13 30 30 H 1.09000 * 109.49627 * 293.87761 * 15 14 13 31 31 H 1.08995 * 109.47267 * 196.24202 * 17 16 15 32 32 H 1.09005 * 109.47389 * 316.24861 * 17 16 15 33 33 H 1.08005 * 119.99912 * 179.97438 * 20 18 17 34 34 H 1.08997 * 109.49228 * 303.13970 * 22 16 15 35 35 H 1.09004 * 109.50988 * 183.07649 * 22 16 15 36 36 H 1.09001 * 109.62990 * 350.86674 * 23 13 11 37 37 H 1.08998 * 109.63084 * 111.45244 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3494 -7.7284 0.0019 15 6 3.0427 -8.4937 -1.1302 16 7 4.4985 -8.3538 -0.9918 17 6 5.2036 -9.2114 -1.9537 18 6 5.1375 -8.5887 -3.3245 19 17 3.6126 -8.4513 -4.1428 20 6 6.2331 -8.1503 -3.8998 21 17 7.7579 -8.2872 -3.0812 22 6 4.9148 -6.9520 -1.1324 23 6 4.2982 -6.1236 0.0003 24 1 -0.4850 0.8400 0.0004 25 1 3.1243 -3.7314 0.8905 26 1 3.1243 -3.7315 -0.8895 27 1 1.2714 -7.7324 -0.1599 28 1 2.5780 -8.2011 0.9570 29 1 2.7718 -9.5481 -1.0757 30 1 2.7279 -8.0861 -2.0909 31 1 6.2457 -9.3155 -1.6518 32 1 4.7324 -10.1941 -1.9779 33 1 6.1858 -7.7044 -4.8824 34 1 4.5739 -6.5660 -2.0930 35 1 6.0017 -6.8880 -1.0796 36 1 4.5089 -5.0666 -0.1627 37 1 4.7167 -6.4402 0.9556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112629287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:48 Heat of formation + Delta-G solvation = -13.958947 kcal Electronic energy + Delta-G solvation = -22468.680126 eV Core-core repulsion = 18845.953943 eV Total energy + Delta-G solvation = -3622.726183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16080 -38.61423 -37.27479 -37.03136 -35.01020 -32.75124 -32.42772 -31.47990 -29.50580 -27.85587 -25.50256 -24.77368 -23.75458 -21.70243 -20.54890 -18.90580 -17.75753 -17.11517 -16.72414 -15.99942 -15.73192 -15.49341 -15.36158 -15.08792 -14.80299 -14.33001 -13.93172 -13.44460 -13.39773 -13.15957 -12.88344 -12.75377 -12.53168 -12.28924 -12.10264 -11.86627 -11.84075 -11.47083 -11.32705 -11.14521 -11.06032 -11.04631 -11.01458 -10.75106 -9.80277 -9.53863 -9.34870 -9.06571 -8.83497 -8.37293 -8.22213 -6.49877 -6.21446 -3.91999 0.96908 1.03445 2.27780 2.91574 3.05974 3.22262 3.25498 3.30187 3.52481 3.63919 3.99693 4.20410 4.53792 4.64714 4.78615 4.97356 5.05846 5.07774 5.13575 5.15631 5.26042 5.29237 5.31524 5.39975 5.51222 5.58502 5.72480 5.80783 5.87495 5.97172 6.11425 6.51201 6.60371 6.67853 7.57719 7.60061 8.35282 8.56998 9.23814 10.86002 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002862 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.811540 B = 9781.545443 C =10572.264291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.517 6.517 13 N -0.621 5.621 14 C 0.119 3.881 15 C 0.024 3.976 16 N -0.519 5.519 17 C 0.082 3.918 18 C -0.101 4.101 19 Cl -0.045 7.045 20 C -0.091 4.091 21 Cl -0.057 7.057 22 C 0.036 3.964 23 C 0.115 3.885 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.568 -21.303 -6.368 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.391 6.391 13 N -0.358 5.358 14 C -0.004 4.004 15 C -0.104 4.104 16 N -0.242 5.242 17 C -0.046 4.046 18 C -0.131 4.131 19 Cl -0.017 7.017 20 C -0.138 4.138 21 Cl -0.029 7.029 22 C -0.092 4.092 23 C -0.009 4.009 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.175 0.825 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.711 -21.629 -5.855 26.270 hybrid contribution 1.856 1.559 -1.028 2.633 sum 15.567 -20.070 -6.883 26.316 Atomic orbital electron populations 1.70018 1.05956 1.27441 1.46862 1.24988 0.95019 0.99010 0.94542 0.86174 0.79439 0.81592 0.78340 1.20287 1.20747 1.19663 1.22858 0.94879 0.91638 1.58942 0.90956 1.85406 1.04997 0.96326 1.96689 1.23546 1.06469 0.95439 1.04624 1.20324 0.86193 0.86166 0.74955 1.90686 1.15159 1.85206 1.48085 1.48140 1.06304 1.05823 1.75538 1.21575 0.99862 0.80867 0.98070 1.22890 0.86908 1.01146 0.99451 1.62276 1.06405 1.07750 1.47742 1.21785 1.02520 0.97000 0.83308 1.24414 0.87501 1.03121 0.98018 1.98428 1.28807 1.96421 1.78002 1.24445 0.85936 1.03568 0.99897 1.98390 1.29395 1.96312 1.78759 1.22589 1.00660 0.87586 0.98406 1.21787 0.80019 1.00464 0.98653 0.92191 0.89237 0.89414 0.88590 0.91149 0.89584 0.92463 0.87219 0.88544 0.82505 0.93669 0.89436 0.88845 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.07 4.52 36.00 0.16 -2.91 16 11 C 0.54 10.32 7.73 -10.99 -0.08 10.23 16 12 O -0.52 -11.92 15.31 5.56 0.09 -11.84 16 13 N -0.62 -9.00 3.01 -172.44 -0.52 -9.52 16 14 C 0.12 1.48 6.60 -3.60 -0.02 1.45 16 15 C 0.02 0.24 5.14 -3.70 -0.02 0.22 16 16 N -0.52 -4.66 4.83 -235.73 -1.14 -5.80 16 17 C 0.08 0.59 5.70 -4.97 -0.03 0.56 16 18 C -0.10 -0.76 4.07 -36.10 -0.15 -0.91 16 19 Cl -0.05 -0.41 26.06 -51.86 -1.35 -1.76 16 20 C -0.09 -0.62 10.53 28.94 0.30 -0.31 16 21 Cl -0.06 -0.38 26.97 -51.86 -1.40 -1.78 16 22 C 0.04 0.35 4.92 -3.68 -0.02 0.33 16 23 C 0.11 1.30 6.51 -3.58 -0.02 1.27 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.09 1.70 8.00 -51.91 -0.42 1.28 16 26 H 0.09 1.67 7.66 -51.91 -0.40 1.27 16 27 H 0.10 1.34 7.06 -51.93 -0.37 0.98 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.70 7.92 -51.93 -0.41 0.29 16 30 H 0.06 0.65 5.34 -51.93 -0.28 0.37 16 31 H 0.11 0.72 6.02 -51.93 -0.31 0.41 16 32 H 0.10 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.05 0.50 7.14 -51.93 -0.37 0.13 16 35 H 0.09 0.73 8.11 -51.93 -0.42 0.30 16 36 H 0.09 1.06 6.02 -51.93 -0.31 0.75 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -33.49 343.14 -9.84 -43.33 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.51 Total: -1.82 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.32 Total: -3.00 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.92 Total: -40.79 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -2.75 Total: -3.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.49 -9.84 -43.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.370 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds