Wall clock time and date at job start Tue Mar 31 2020 21:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00291 * 2 1 4 4 H 1.48505 * 109.47160 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.47152 * 29.99857 * 3 2 1 6 6 H 1.48498 * 109.47603 * 150.00119 * 3 2 1 7 7 C 1.38802 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99866 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00292 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99783 * 179.97438 * 11 10 9 14 14 C 1.47080 * 120.88443 * 179.97438 * 13 11 10 15 15 C 1.53235 * 108.52157 * 128.83556 * 14 13 11 16 16 N 1.46907 * 109.33899 * 53.83377 * 15 14 13 17 17 C 1.46899 * 111.00074 * 172.74273 * 16 15 14 18 18 C 1.50704 * 109.46782 * 76.24568 * 17 16 15 19 19 Cl 1.73603 * 120.00015 * 293.51917 * 18 17 16 20 20 C 1.31288 * 119.99913 * 113.52266 * 18 17 16 21 21 Cl 1.73603 * 120.00072 * 359.97438 * 20 18 17 22 22 C 1.46899 * 111.26688 * 296.89533 * 16 15 14 23 23 C 1.47080 * 120.88177 * 0.02562 * 13 11 10 24 24 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46930 * 59.99899 * 10 9 7 26 26 H 1.09003 * 109.46817 * 299.99639 * 10 9 7 27 27 H 1.09007 * 109.62615 * 9.13103 * 14 13 11 28 28 H 1.08994 * 109.79548 * 248.64456 * 14 13 11 29 29 H 1.08997 * 109.49826 * 173.79230 * 15 14 13 30 30 H 1.09000 * 109.49627 * 293.87761 * 15 14 13 31 31 H 1.08995 * 109.47267 * 196.24202 * 17 16 15 32 32 H 1.09005 * 109.47389 * 316.24861 * 17 16 15 33 33 H 1.08005 * 119.99912 * 179.97438 * 20 18 17 34 34 H 1.08997 * 109.49228 * 303.13970 * 22 16 15 35 35 H 1.09004 * 109.50988 * 183.07649 * 22 16 15 36 36 H 1.09001 * 109.62990 * 350.86674 * 23 13 11 37 37 H 1.08998 * 109.63084 * 111.45244 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3494 -7.7284 0.0019 15 6 3.0427 -8.4937 -1.1302 16 7 4.4985 -8.3538 -0.9918 17 6 5.2036 -9.2114 -1.9537 18 6 5.1375 -8.5887 -3.3245 19 17 3.6126 -8.4513 -4.1428 20 6 6.2331 -8.1503 -3.8998 21 17 7.7579 -8.2872 -3.0812 22 6 4.9148 -6.9520 -1.1324 23 6 4.2982 -6.1236 0.0003 24 1 -0.4850 0.8400 0.0004 25 1 3.1243 -3.7314 0.8905 26 1 3.1243 -3.7315 -0.8895 27 1 1.2714 -7.7324 -0.1599 28 1 2.5780 -8.2011 0.9570 29 1 2.7718 -9.5481 -1.0757 30 1 2.7279 -8.0861 -2.0909 31 1 6.2457 -9.3155 -1.6518 32 1 4.7324 -10.1941 -1.9779 33 1 6.1858 -7.7044 -4.8824 34 1 4.5739 -6.5660 -2.0930 35 1 6.0017 -6.8880 -1.0796 36 1 4.5089 -5.0666 -0.1627 37 1 4.7167 -6.4402 0.9556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112629287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:47 Heat of formation + Delta-G solvation = -36.456257 kcal Electronic energy + Delta-G solvation = -22469.655683 eV Core-core repulsion = 18845.953943 eV Total energy + Delta-G solvation = -3623.701740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.036 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27398 -39.63667 -38.03163 -37.65760 -36.02798 -34.58681 -33.55417 -32.42067 -30.85802 -28.85374 -27.65453 -25.61073 -24.68471 -22.64894 -21.32844 -20.22218 -19.45999 -18.29684 -17.62389 -16.97935 -16.87221 -16.77758 -16.58011 -16.38703 -15.87975 -15.77307 -15.23023 -14.68329 -14.47695 -14.36600 -13.97208 -13.70144 -13.51987 -13.33824 -13.17094 -12.98008 -12.89303 -12.76822 -12.67933 -12.53852 -12.33270 -12.16000 -11.90452 -11.72781 -11.66085 -11.14347 -10.89332 -10.27151 -10.13596 -9.84896 -9.28669 -8.67857 -8.34646 -6.13214 0.41141 0.45829 1.24838 1.42656 1.45481 1.55724 1.56419 1.72032 2.06821 2.27277 2.82062 2.99601 3.24263 3.43989 3.63115 3.87806 3.92648 4.04559 4.20224 4.26124 4.33571 4.37419 4.43759 4.52525 4.58293 4.70662 4.74241 4.76323 4.81067 4.85945 5.06166 5.41624 5.48234 5.82915 5.87164 6.19673 6.28465 7.06504 7.12029 8.74673 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002862 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.811540 B = 9781.545443 C =10572.264291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.608 5.608 14 C 0.116 3.884 15 C 0.032 3.968 16 N -0.517 5.517 17 C 0.085 3.915 18 C -0.109 4.109 19 Cl -0.062 7.062 20 C -0.083 4.083 21 Cl -0.052 7.052 22 C 0.043 3.957 23 C 0.107 3.893 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.166 0.834 34 H 0.032 0.968 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.752 -21.925 -6.394 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.321 3.679 12 O -0.445 6.445 13 N -0.343 5.343 14 C -0.006 4.006 15 C -0.096 4.096 16 N -0.240 5.240 17 C -0.043 4.043 18 C -0.139 4.139 19 Cl -0.034 7.034 20 C -0.130 4.130 21 Cl -0.024 7.024 22 C -0.086 4.086 23 C -0.015 4.015 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.183 0.817 34 H 0.050 0.950 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.956 -22.300 -5.885 28.625 hybrid contribution 0.978 1.593 -1.025 2.132 sum 17.934 -20.706 -6.910 28.251 Atomic orbital electron populations 1.70186 1.08012 1.28610 1.48003 1.26132 0.95955 1.03320 0.93700 0.84952 0.78260 0.75962 0.78807 1.19304 1.20328 1.18044 1.23191 0.95333 0.91877 1.58903 0.89872 1.85597 1.10570 0.99279 1.97017 1.23353 1.03413 0.94399 1.06216 1.20122 0.85976 0.86636 0.75164 1.90669 1.17190 1.85761 1.50861 1.48144 1.07301 1.05619 1.73213 1.21742 0.99059 0.79798 1.00038 1.22802 0.87479 1.01831 0.97488 1.62274 1.05669 1.07496 1.48516 1.21848 1.02899 0.97027 0.82540 1.24406 0.86977 1.04145 0.98333 1.98429 1.30012 1.96564 1.78406 1.24574 0.85824 1.02463 1.00112 1.98398 1.29041 1.96228 1.78700 1.22523 1.01519 0.87699 0.96842 1.22086 0.77792 1.01170 1.00488 0.92000 0.87403 0.87717 0.90753 0.89456 0.87346 0.93776 0.86188 0.87307 0.81685 0.94974 0.87471 0.88796 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.55 -31.23 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.12 -5.00 4.52 71.24 0.32 -4.68 16 11 C 0.53 20.67 7.73 87.66 0.68 21.35 16 12 O -0.57 -27.09 15.31 -3.01 -0.05 -27.14 16 13 N -0.61 -16.95 3.01 -817.88 -2.46 -19.41 16 14 C 0.12 2.75 6.60 86.35 0.57 3.32 16 15 C 0.03 0.58 5.14 86.38 0.44 1.03 16 16 N -0.52 -7.83 4.83 -899.73 -4.35 -12.18 16 17 C 0.08 0.97 5.70 85.56 0.49 1.45 16 18 C -0.11 -1.41 4.07 25.36 0.10 -1.31 16 19 Cl -0.06 -1.07 26.06 -2.72 -0.07 -1.14 16 20 C -0.08 -0.93 10.53 67.50 0.71 -0.22 16 21 Cl -0.05 -0.56 26.97 -2.72 -0.07 -0.63 16 22 C 0.04 0.71 4.92 86.40 0.43 1.13 16 23 C 0.11 2.15 6.51 86.36 0.56 2.72 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.11 3.97 8.00 -2.39 -0.02 3.95 16 26 H 0.10 3.88 7.66 -2.39 -0.02 3.86 16 27 H 0.07 2.12 7.06 -2.38 -0.02 2.10 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 1.49 7.92 -2.39 -0.02 1.47 16 30 H 0.04 0.95 5.34 -2.39 -0.01 0.93 16 31 H 0.12 1.17 6.02 -2.39 -0.01 1.16 16 32 H 0.11 1.01 7.85 -2.38 -0.02 0.99 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.03 0.64 7.14 -2.39 -0.02 0.62 16 35 H 0.11 1.40 8.11 -2.38 -0.02 1.38 16 36 H 0.09 1.89 6.02 -2.39 -0.01 1.88 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -74.80 343.14 0.66 -74.14 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.10 Total: 11.05 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.41 Total: -4.56 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -6.52 Total: -87.58 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.14 Total: -1.77 kcal Total: -74.80 0.66 -74.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.680 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds