Wall clock time and date at job start Tue Mar 31 2020 20:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47260 * 2 1 4 4 C 1.46499 * 119.99726 * 279.85619 * 3 2 1 5 5 C 1.50690 * 109.47395 * 274.99748 * 4 3 2 6 6 H 1.08001 * 119.99896 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99654 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00490 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47315 * 89.99943 * 9 7 5 11 11 H 1.48504 * 109.47174 * 209.99877 * 9 7 5 12 12 H 1.48499 * 109.47017 * 329.99563 * 9 7 5 13 13 S 1.65599 * 119.99859 * 99.85609 * 3 2 1 14 14 O 1.42098 * 106.40435 * 344.85505 * 13 3 2 15 15 O 1.42099 * 106.39946 * 211.93465 * 13 3 2 16 16 C 1.76194 * 107.21804 * 98.39694 * 13 3 2 17 17 C 1.38135 * 120.41557 * 112.95434 * 16 13 3 18 18 N 1.31902 * 120.79601 * 180.31119 * 17 16 13 19 19 C 1.32001 * 121.73730 * 359.71858 * 18 17 16 20 20 Cl 1.73596 * 119.62503 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.74835 * 359.97438 * 19 18 17 22 22 C 1.38755 * 119.13596 * 359.97438 * 21 19 18 23 23 Cl 1.73600 * 120.79718 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.47505 * 59.99855 * 1 2 3 25 25 H 1.09007 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47111 * 299.99888 * 1 2 3 27 27 H 1.09001 * 109.47261 * 239.99913 * 2 1 3 28 28 H 1.09001 * 109.47355 * 119.99793 * 2 1 3 29 29 H 1.09003 * 109.47263 * 35.00265 * 4 3 2 30 30 H 1.09006 * 109.46636 * 154.99970 * 4 3 2 31 31 H 0.96997 * 120.00090 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.60406 * 0.02562 * 17 16 13 33 33 H 1.08005 * 120.43080 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0577 2.1442 -1.2500 5 6 3.3402 1.8435 -1.9819 6 1 4.0543 1.1527 -1.5585 7 6 3.6019 2.4500 -3.1921 8 7 2.7320 3.2908 -3.7079 9 14 5.1913 2.0767 -4.0996 10 1 4.9834 0.9195 -5.0067 11 1 5.5972 3.2629 -4.8957 12 1 6.2571 1.7511 -3.1181 13 16 2.5258 2.0800 1.4130 14 8 2.0442 1.2544 2.4645 15 8 2.2196 3.4637 1.3089 16 6 4.2832 1.9609 1.4519 17 6 5.0632 3.0982 1.3721 18 7 6.3795 3.0173 1.3944 19 6 7.0023 1.8581 1.4985 20 17 8.7375 1.8154 1.5233 21 6 6.2880 0.6774 1.5892 22 6 4.9013 0.7235 1.5700 23 17 3.9619 -0.7321 1.6817 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.2090 1.8637 -1.8738 30 1 2.0081 3.2100 -1.0268 31 1 2.9160 3.7173 -4.5595 32 1 4.5895 4.0650 1.2857 33 1 6.8028 -0.2683 1.6738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116442243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:59 Heat of formation + Delta-G solvation = -43.361950 kcal Electronic energy + Delta-G solvation = -23598.491559 eV Core-core repulsion = 19838.657272 eV Total energy + Delta-G solvation = -3759.834287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37496 -37.32927 -36.96507 -36.67037 -36.18457 -35.46595 -32.82036 -32.55745 -31.52492 -30.03749 -26.77755 -24.31246 -24.05601 -23.26481 -21.76625 -18.93705 -18.08183 -17.52996 -17.03199 -16.93867 -16.39486 -15.55284 -14.88057 -14.84100 -14.58897 -14.37198 -14.03012 -13.46666 -13.32178 -13.07392 -12.73668 -12.30496 -12.09318 -11.88653 -11.82953 -11.75359 -11.63290 -11.59635 -11.41850 -11.14561 -11.01328 -10.96512 -10.55731 -10.38117 -10.13421 -9.95077 -9.85073 -9.74800 -9.47830 -8.58372 -8.21171 -6.20501 -4.27783 0.22109 0.74626 0.79731 1.25671 1.75176 3.10082 3.19174 3.27414 3.28477 3.43973 4.03869 4.18997 4.29376 4.30439 4.60146 4.95139 5.04711 5.14267 5.29395 5.34638 5.36225 5.70263 5.75019 6.00656 6.03848 6.25058 6.56038 6.60227 7.22191 7.28255 7.34756 7.48552 7.75347 8.02931 8.76255 9.39475 10.87201 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.007338 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.328633 B = 3814.640742 C = 5514.100391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.970 5.970 4 C 0.243 3.757 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.275 1.275 13 S 2.689 3.311 14 O -0.957 6.957 15 O -0.949 6.949 16 C -0.710 4.710 17 C 0.241 3.759 18 N -0.485 5.485 19 C 0.230 3.770 20 Cl -0.015 7.015 21 C -0.172 4.172 22 C 0.112 3.888 23 Cl -0.012 7.012 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.266 0.734 32 H 0.194 0.806 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -6.865 10.099 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.008 4.008 3 N -0.811 5.811 4 C 0.122 3.878 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.200 1.200 13 S 2.773 3.227 14 O -0.947 6.947 15 O -0.939 6.939 16 C -0.794 4.794 17 C 0.083 3.917 18 N -0.196 5.196 19 C 0.066 3.934 20 Cl 0.014 6.986 21 C -0.194 4.194 22 C 0.076 3.924 23 Cl 0.018 6.982 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.211 0.789 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.342 -5.745 10.518 12.747 hybrid contribution 1.420 -1.261 -1.051 2.171 sum 5.762 -7.006 9.467 13.111 Atomic orbital electron populations 1.22170 0.96389 1.01557 1.02524 1.21359 0.94082 0.82470 1.02926 1.57362 1.75319 1.23093 1.25317 1.19303 0.98081 0.91475 0.78968 1.21489 1.04378 1.27093 1.05484 0.92311 1.24892 0.96735 0.94681 0.97123 1.69915 1.35089 1.28202 1.19080 0.86646 0.83644 0.78119 0.80012 1.20401 1.20873 1.19954 1.02341 0.72859 0.74036 0.73493 1.93567 1.77895 1.69093 1.54184 1.93568 1.81937 1.31822 1.86563 1.32421 1.32155 0.98125 1.16721 1.22603 0.86794 0.97942 0.84318 1.67198 1.11370 1.26868 1.14212 1.21776 0.87968 0.89848 0.93856 1.98424 1.05941 1.98364 1.95905 1.21684 0.92272 0.99689 1.05801 1.20586 0.91917 0.88000 0.91923 1.98446 1.70146 1.34347 1.95261 0.91729 0.92128 0.92768 0.90072 0.90723 0.93433 0.92966 0.92424 0.78898 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.19 37.15 0.38 -2.07 16 2 C 0.12 1.94 5.51 -4.04 -0.02 1.91 16 3 N -0.97 -18.80 2.78 -115.67 -0.32 -19.12 16 4 C 0.24 5.64 5.42 -5.20 -0.03 5.61 16 5 C -0.55 -13.68 9.38 -34.45 -0.32 -14.00 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 S 2.69 50.58 5.13 -107.50 -0.55 50.03 16 14 O -0.96 -17.79 15.16 -57.17 -0.87 -18.65 16 15 O -0.95 -19.79 15.75 -57.17 -0.90 -20.69 16 16 C -0.71 -12.45 5.94 -39.40 -0.23 -12.68 16 17 C 0.24 4.15 10.71 -17.56 -0.19 3.96 16 18 N -0.48 -8.20 10.34 -10.38 -0.11 -8.31 16 19 C 0.23 3.49 7.27 -17.46 -0.13 3.36 16 20 Cl -0.02 -0.19 29.11 -51.86 -1.51 -1.70 16 21 C -0.17 -2.42 9.70 -39.37 -0.38 -2.81 16 22 C 0.11 1.77 6.35 -39.17 -0.25 1.52 16 23 Cl -0.01 -0.17 23.47 -51.86 -1.22 -1.38 16 24 H 0.06 0.98 7.74 -51.93 -0.40 0.58 16 25 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.14 4.32 -51.93 -0.22 0.92 16 29 H 0.05 1.14 7.71 -51.93 -0.40 0.74 16 30 H 0.05 1.31 7.05 -51.93 -0.37 0.95 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.19 3.04 7.34 -52.49 -0.39 2.66 16 33 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -29.02 324.58 -9.15 -38.17 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.01 Total: -1.68 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.27 Total: -13.46 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.31 Total: -51.09 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.77 Total: -39.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.55 Total: 50.03 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -2.73 Total: -3.08 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.02 -9.15 -38.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116442243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.189 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds