Wall clock time and date at job start Tue Mar 31 2020 20:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47260 * 2 1 4 4 C 1.46499 * 119.99726 * 279.85619 * 3 2 1 5 5 C 1.50690 * 109.47395 * 274.99748 * 4 3 2 6 6 H 1.08001 * 119.99896 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00509 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99654 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00490 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47315 * 89.99943 * 9 7 5 11 11 H 1.48504 * 109.47174 * 209.99877 * 9 7 5 12 12 H 1.48499 * 109.47017 * 329.99563 * 9 7 5 13 13 S 1.65599 * 119.99859 * 99.85609 * 3 2 1 14 14 O 1.42098 * 106.40435 * 344.85505 * 13 3 2 15 15 O 1.42099 * 106.39946 * 211.93465 * 13 3 2 16 16 C 1.76194 * 107.21804 * 98.39694 * 13 3 2 17 17 C 1.38135 * 120.41557 * 112.95434 * 16 13 3 18 18 N 1.31902 * 120.79601 * 180.31119 * 17 16 13 19 19 C 1.32001 * 121.73730 * 359.71858 * 18 17 16 20 20 Cl 1.73596 * 119.62503 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.74835 * 359.97438 * 19 18 17 22 22 C 1.38755 * 119.13596 * 359.97438 * 21 19 18 23 23 Cl 1.73600 * 120.79718 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.47505 * 59.99855 * 1 2 3 25 25 H 1.09007 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47111 * 299.99888 * 1 2 3 27 27 H 1.09001 * 109.47261 * 239.99913 * 2 1 3 28 28 H 1.09001 * 109.47355 * 119.99793 * 2 1 3 29 29 H 1.09003 * 109.47263 * 35.00265 * 4 3 2 30 30 H 1.09006 * 109.46636 * 154.99970 * 4 3 2 31 31 H 0.96997 * 120.00090 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.60406 * 0.02562 * 17 16 13 33 33 H 1.08005 * 120.43080 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0577 2.1442 -1.2500 5 6 3.3402 1.8435 -1.9819 6 1 4.0543 1.1527 -1.5585 7 6 3.6019 2.4500 -3.1921 8 7 2.7320 3.2908 -3.7079 9 14 5.1913 2.0767 -4.0996 10 1 4.9834 0.9195 -5.0067 11 1 5.5972 3.2629 -4.8957 12 1 6.2571 1.7511 -3.1181 13 16 2.5258 2.0800 1.4130 14 8 2.0442 1.2544 2.4645 15 8 2.2196 3.4637 1.3089 16 6 4.2832 1.9609 1.4519 17 6 5.0632 3.0982 1.3721 18 7 6.3795 3.0173 1.3944 19 6 7.0023 1.8581 1.4985 20 17 8.7375 1.8154 1.5233 21 6 6.2880 0.6774 1.5892 22 6 4.9013 0.7235 1.5700 23 17 3.9619 -0.7321 1.6817 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.2090 1.8637 -1.8738 30 1 2.0081 3.2100 -1.0268 31 1 2.9160 3.7173 -4.5595 32 1 4.5895 4.0650 1.2857 33 1 6.8028 -0.2683 1.6738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116442243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:58 Heat of formation + Delta-G solvation = -61.884794 kcal Electronic energy + Delta-G solvation = -23599.294770 eV Core-core repulsion = 19838.657272 eV Total energy + Delta-G solvation = -3760.637498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60390 -38.64644 -38.21288 -37.94143 -37.72881 -37.01216 -34.71885 -33.80586 -32.75882 -31.52929 -28.56332 -25.59486 -25.30019 -24.95269 -23.26631 -20.34853 -19.41611 -18.92705 -18.54914 -18.38380 -18.14354 -17.13637 -16.36248 -16.10655 -16.00282 -15.64450 -15.49257 -14.83239 -14.79028 -14.52031 -14.05696 -13.80850 -13.65262 -13.36794 -13.31490 -13.15554 -13.02360 -12.93436 -12.77002 -12.71029 -12.61005 -12.37733 -12.18370 -12.10447 -11.74583 -11.46572 -11.17510 -11.02077 -10.67084 -10.58284 -9.84285 -8.19824 -6.32100 -1.06254 -0.66472 -0.46717 0.09264 0.56717 1.37041 1.39896 1.46775 1.76198 2.02358 2.38470 2.57057 2.96782 3.01234 3.13146 3.40355 3.61961 3.83138 3.96162 4.02756 4.21459 4.44813 4.48460 4.71715 4.80323 5.01256 5.16112 5.27432 5.42594 5.51768 5.72731 5.87953 6.07404 6.10363 6.78906 7.37937 8.87894 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.007338 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.328633 B = 3814.640742 C = 5514.100391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.975 5.975 4 C 0.259 3.741 5 C -0.542 4.542 6 H 0.063 0.937 7 C 0.022 3.978 8 N -0.920 5.920 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.698 3.302 14 O -0.956 6.956 15 O -0.977 6.977 16 C -0.725 4.725 17 C 0.230 3.770 18 N -0.500 5.500 19 C 0.222 3.778 20 Cl 0.010 6.990 21 C -0.161 4.161 22 C 0.103 3.897 23 Cl 0.002 6.998 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.196 0.804 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -8.767 10.533 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.815 5.815 4 C 0.135 3.865 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.179 4.179 8 N -0.559 5.559 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.785 3.215 14 O -0.946 6.946 15 O -0.967 6.967 16 C -0.812 4.812 17 C 0.071 3.929 18 N -0.212 5.212 19 C 0.057 3.943 20 Cl 0.039 6.961 21 C -0.182 4.182 22 C 0.067 3.933 23 Cl 0.031 6.969 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.212 0.788 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.797 -7.674 10.966 14.586 hybrid contribution 1.036 -0.727 -1.099 1.676 sum 6.833 -8.401 9.867 14.650 Atomic orbital electron populations 1.22181 0.95057 1.03457 1.01886 1.21618 0.95339 0.80971 1.03640 1.57268 1.76146 1.24040 1.24015 1.18852 0.97014 0.90516 0.80085 1.21756 1.04810 1.26334 1.05262 0.91851 1.25601 0.99353 0.94771 0.98155 1.70020 1.36811 1.29501 1.19585 0.85787 0.80409 0.77985 0.78984 1.19467 1.21112 1.19628 1.01819 0.73257 0.73287 0.73165 1.93559 1.78433 1.68851 1.53799 1.93530 1.82881 1.33466 1.86833 1.32142 1.30943 0.99321 1.18778 1.22693 0.87241 0.98159 0.84760 1.67227 1.11125 1.28018 1.14808 1.22153 0.89269 0.89783 0.93052 1.98434 1.03689 1.98289 1.95650 1.22065 0.91521 1.00858 1.03781 1.20764 0.92881 0.87863 0.91828 1.98445 1.70031 1.33252 1.95137 0.92824 0.88977 0.92963 0.89944 0.89317 0.94672 0.95518 0.92463 0.78767 0.78450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.19 71.98 0.73 -3.95 16 2 C 0.11 3.47 5.51 86.38 0.48 3.94 16 3 N -0.97 -37.66 2.78 -519.85 -1.45 -39.10 16 4 C 0.26 12.18 5.42 85.63 0.46 12.65 16 5 C -0.54 -27.13 9.38 25.60 0.24 -26.89 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.02 1.14 5.46 84.65 0.46 1.60 16 8 N -0.92 -51.32 13.29 21.45 0.28 -51.03 16 9 Si 0.94 41.66 29.54 68.60 2.03 43.68 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 S 2.70 101.41 5.13 -56.49 -0.29 101.12 16 14 O -0.96 -34.74 15.16 -128.00 -1.94 -36.68 16 15 O -0.98 -41.80 15.75 -128.00 -2.02 -43.81 16 16 C -0.73 -24.94 5.94 22.38 0.13 -24.81 16 17 C 0.23 7.86 10.71 84.66 0.91 8.77 16 18 N -0.50 -16.39 10.34 -186.76 -1.93 -18.32 16 19 C 0.22 6.25 7.27 84.68 0.62 6.86 16 20 Cl 0.01 0.24 29.11 -2.72 -0.08 0.16 16 21 C -0.16 -4.08 9.70 22.41 0.22 -3.86 16 22 C 0.10 3.06 6.35 22.53 0.14 3.21 16 23 Cl 0.00 0.04 23.47 -2.72 -0.06 -0.02 16 24 H 0.05 1.61 7.74 -2.39 -0.02 1.59 16 25 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.09 2.55 4.32 -2.39 -0.01 2.54 16 29 H 0.04 1.73 7.71 -2.39 -0.02 1.71 16 30 H 0.03 1.40 7.05 -2.38 -0.02 1.38 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.20 6.33 7.34 -2.91 -0.02 6.31 16 33 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -61.00 324.58 0.10 -60.90 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.16 Total: 5.58 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.39 Total: -22.49 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.09 Total: -108.45 kcal Atomic # 8 Polarization: -76.54 SS G_CDS: -3.96 Total: -80.49 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 101.41 SS G_CDS: -0.29 Total: 101.12 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.14 Total: 0.14 kcal Total: -61.00 0.10 -60.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116442243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.982 kcal (2) G-P(sol) polarization free energy of solvation -61.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds