Wall clock time and date at job start Tue Mar 31 2020 20:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47201 * 2 1 4 4 H 1.09004 * 109.46541 * 305.55895 * 3 2 1 5 5 C 1.50694 * 109.47524 * 185.55322 * 3 2 1 6 6 H 1.08002 * 120.00195 * 240.00141 * 5 3 2 7 7 C 1.37886 * 119.99590 * 59.72164 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.27797 * 7 5 3 9 9 Si 1.86803 * 119.99742 * 180.27557 * 7 5 3 10 10 H 1.48503 * 109.47018 * 90.00173 * 9 7 5 11 11 H 1.48497 * 109.47191 * 210.00294 * 9 7 5 12 12 H 1.48502 * 109.47261 * 330.00293 * 9 7 5 13 13 N 1.46500 * 109.46902 * 65.55193 * 3 2 1 14 14 S 1.65603 * 120.00160 * 241.14873 * 13 3 2 15 15 O 1.42104 * 106.39980 * 48.82480 * 14 13 3 16 16 O 1.42098 * 106.40145 * 181.73958 * 14 13 3 17 17 C 1.76193 * 107.21994 * 295.28558 * 14 13 3 18 18 C 1.38132 * 120.41641 * 115.48222 * 17 14 13 19 19 N 1.31904 * 120.79591 * 179.67706 * 18 17 14 20 20 C 1.32004 * 121.73518 * 0.63636 * 19 18 17 21 21 Cl 1.73606 * 119.62165 * 179.67699 * 20 19 18 22 22 C 1.38290 * 120.75116 * 359.65560 * 20 19 18 23 23 C 1.38758 * 119.13419 * 0.02562 * 22 20 19 24 24 Cl 1.73600 * 120.79755 * 179.97438 * 23 22 20 25 25 H 1.09000 * 109.47304 * 59.48647 * 1 2 3 26 26 H 1.09004 * 109.46834 * 179.48541 * 1 2 3 27 27 H 1.08997 * 109.47036 * 299.48517 * 1 2 3 28 28 H 1.09001 * 109.47581 * 240.00044 * 2 1 3 29 29 H 1.09002 * 109.47123 * 119.99803 * 2 1 3 30 30 H 0.96996 * 120.00576 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99911 * 61.15372 * 13 3 2 32 32 H 1.08001 * 119.60199 * 359.97438 * 18 17 14 33 33 H 1.07992 * 120.43635 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9842 -0.8361 5 6 3.5407 1.4449 -0.1375 6 1 4.1530 1.8869 0.6345 7 6 4.1322 0.8774 -1.2462 8 7 3.3866 0.3390 -2.1863 9 14 5.9928 0.8734 -1.4130 10 1 6.5424 -0.3606 -0.7961 11 1 6.3609 0.9141 -2.8510 12 1 6.5541 2.0634 -0.7245 13 7 1.6638 2.0935 1.2574 14 16 0.6806 3.4259 1.2383 15 8 -0.4235 3.0979 0.4059 16 8 0.5387 3.8393 2.5903 17 6 1.5601 4.7113 0.4145 18 6 1.0973 5.2184 -0.7842 19 7 1.7463 6.1850 -1.4041 20 6 2.8617 6.6960 -0.9169 21 17 3.6757 7.9614 -1.7829 22 6 3.3889 6.2350 0.2755 23 6 2.7299 5.2232 0.9592 24 17 3.3537 4.6116 2.4594 25 1 -0.3634 0.5218 -0.8853 26 1 -0.3633 -1.0277 -0.0092 27 1 -0.3633 0.5058 0.8945 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8026 -0.0598 -2.9665 31 1 1.9907 1.7440 2.1011 32 1 0.1906 4.8218 -1.2166 33 1 4.3015 6.6570 0.6696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116614729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:17 Heat of formation + Delta-G solvation = -72.154812 kcal Electronic energy + Delta-G solvation = -23452.706734 eV Core-core repulsion = 19691.623894 eV Total energy + Delta-G solvation = -3761.082840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58809 -38.52935 -38.22807 -37.92997 -37.60693 -36.97409 -34.14200 -33.77428 -32.75833 -32.21591 -28.52578 -25.53700 -25.30735 -24.79897 -21.89790 -20.78299 -19.55078 -18.97215 -18.69156 -18.28273 -17.95842 -17.03556 -16.29286 -16.07602 -15.98549 -15.54929 -15.44092 -14.90866 -14.71349 -14.44602 -13.91910 -13.50681 -13.46927 -13.23633 -13.17218 -13.04124 -12.93812 -12.91943 -12.66904 -12.62128 -12.56532 -12.27400 -12.07440 -11.76327 -11.48231 -11.34651 -11.14216 -11.03816 -10.65798 -10.45718 -10.00720 -8.08530 -6.21920 -1.04098 -0.61515 -0.44787 0.13677 0.61092 1.42889 1.46835 1.52866 1.84545 2.06156 2.45873 2.61655 3.00984 3.07460 3.19997 3.41183 3.68884 3.85101 4.03969 4.22700 4.49722 4.66249 4.72710 4.81384 4.95611 5.17312 5.42961 5.50260 5.71701 5.84259 6.10742 6.10830 6.17323 6.45382 6.88467 7.47702 8.94484 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.006512 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.782153 B = 4298.868653 C = 5613.202097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.286 3.714 4 H 0.026 0.974 5 C -0.534 4.534 6 H 0.069 0.931 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.267 1.267 13 N -1.088 6.088 14 S 2.707 3.293 15 O -0.967 6.967 16 O -0.968 6.968 17 C -0.731 4.731 18 C 0.227 3.773 19 N -0.499 5.499 20 C 0.225 3.775 21 Cl 0.010 6.990 22 C -0.165 4.165 23 C 0.109 3.891 24 Cl -0.003 7.003 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.420 0.580 32 H 0.203 0.797 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 10.408 5.306 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.573 4.573 6 H 0.087 0.913 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.192 1.192 13 N -0.850 5.850 14 S 2.791 3.209 15 O -0.957 6.957 16 O -0.958 6.958 17 C -0.818 4.818 18 C 0.069 3.931 19 N -0.211 5.211 20 C 0.060 3.940 21 Cl 0.039 6.961 22 C -0.186 4.186 23 C 0.073 3.927 24 Cl 0.026 6.974 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.255 0.745 32 H 0.220 0.780 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.861 10.894 4.559 11.841 hybrid contribution 2.171 -0.265 0.276 2.205 sum 1.310 10.629 4.835 11.750 Atomic orbital electron populations 1.21754 0.96891 1.00501 1.00749 1.21793 0.93904 0.98718 1.02085 1.18336 0.93946 0.90600 0.79014 0.95648 1.21735 0.92268 1.37764 1.05570 0.91285 1.25511 1.01325 0.95043 0.95699 1.69963 1.36159 1.38800 1.09856 0.85824 0.81841 0.78730 0.76914 1.20238 1.21683 1.19165 1.55288 1.69906 1.43419 1.16362 1.01546 0.73612 0.72836 0.72879 1.93568 1.49051 1.82985 1.70086 1.93571 1.86049 1.82540 1.33635 1.32149 1.12282 1.24790 1.12559 1.22827 0.96920 0.86702 0.86687 1.67242 1.08047 1.11779 1.34079 1.22115 0.90780 0.91082 0.89980 1.98437 1.74989 1.46460 1.76178 1.22053 1.03618 0.98088 0.94879 1.20766 0.91078 0.92164 0.88738 1.98468 1.85789 1.85461 1.27652 0.94191 0.92782 0.93593 0.90336 0.93448 0.92796 0.74468 0.78024 0.78880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.49 71.98 0.68 -4.69 16 2 C -0.12 -5.33 5.45 30.60 0.17 -5.17 16 3 C 0.29 12.43 2.27 44.25 0.10 12.53 16 4 H 0.03 1.23 7.69 -2.39 -0.02 1.21 16 5 C -0.53 -25.18 8.84 25.60 0.23 -24.95 16 6 H 0.07 3.14 7.81 -2.91 -0.02 3.11 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -47.49 11.28 21.45 0.24 -47.25 16 9 Si 0.94 39.94 29.54 68.60 2.03 41.96 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 13 N -1.09 -39.22 4.71 -172.52 -0.81 -40.03 16 14 S 2.71 94.06 4.96 -56.49 -0.28 93.78 16 15 O -0.97 -36.65 15.97 -128.00 -2.04 -38.69 16 16 O -0.97 -34.36 16.68 -128.00 -2.14 -36.50 16 17 C -0.73 -24.11 5.89 22.39 0.13 -23.98 16 18 C 0.23 7.23 10.71 84.66 0.91 8.14 16 19 N -0.50 -15.62 10.34 -186.74 -1.93 -17.55 16 20 C 0.22 6.24 7.27 84.68 0.62 6.86 16 21 Cl 0.01 0.23 29.11 -2.72 -0.08 0.16 16 22 C -0.16 -4.29 9.70 22.41 0.22 -4.08 16 23 C 0.11 3.30 6.35 22.54 0.14 3.44 16 24 Cl 0.00 -0.10 26.83 -2.72 -0.07 -0.17 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.04 1.64 7.46 -2.39 -0.02 1.62 16 28 H 0.08 3.81 5.93 -2.39 -0.01 3.80 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.42 13.41 8.96 -96.75 -0.87 12.54 16 32 H 0.20 5.77 7.35 -2.91 -0.02 5.75 16 33 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -56.93 327.99 -1.14 -58.07 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.31 Total: 16.46 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.64 Total: -30.23 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -2.50 Total: -104.84 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -4.18 Total: -75.18 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 94.06 SS G_CDS: -0.28 Total: 93.78 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.15 Total: -0.01 kcal Total: -56.93 -1.14 -58.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116614729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.088 kcal (2) G-P(sol) polarization free energy of solvation -56.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds