Wall clock time and date at job start Tue Mar 31 2020 20:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46823 * 157.03253 * 3 2 1 5 5 C 1.36944 * 119.99637 * 269.71772 * 4 3 2 6 6 H 1.08002 * 119.99664 * 32.66001 * 5 4 3 7 7 C 1.38808 * 119.99938 * 212.66010 * 5 4 3 8 8 N 1.31622 * 120.00093 * 314.13424 * 7 5 4 9 9 Si 1.86798 * 120.00099 * 134.13713 * 7 5 4 10 10 H 1.48504 * 109.47296 * 89.99577 * 9 7 5 11 11 H 1.48492 * 109.47359 * 209.99805 * 9 7 5 12 12 H 1.48496 * 109.46896 * 329.99845 * 9 7 5 13 13 C 1.46495 * 120.00160 * 90.00201 * 4 3 2 14 14 C 1.50703 * 109.46939 * 262.49007 * 13 4 3 15 15 C 1.38247 * 120.00561 * 268.88020 * 14 13 4 16 16 C 1.38214 * 120.01023 * 179.79077 * 15 14 13 17 17 C 1.38271 * 120.01772 * 0.45925 * 16 15 14 18 18 N 1.48002 * 119.99266 * 179.76838 * 17 16 15 19 19 O 1.21797 * 120.00050 * 180.02562 * 18 17 16 20 20 O 1.21801 * 120.00087 * 0.02562 * 18 17 16 21 21 C 1.38195 * 120.01119 * 359.79132 * 17 16 15 22 22 C 1.38304 * 120.00564 * 89.15400 * 14 13 4 23 23 Br 1.89098 * 120.01065 * 359.97438 * 22 14 13 24 24 H 4.40635 * 5.51577 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47459 * 37.02493 * 3 2 1 26 26 H 1.09006 * 109.46738 * 277.02961 * 3 2 1 27 27 H 0.96997 * 120.00213 * 179.19455 * 8 7 5 28 28 H 1.09001 * 109.47536 * 22.48871 * 13 4 3 29 29 H 1.09002 * 109.47632 * 142.49463 * 13 4 3 30 30 H 1.08004 * 119.99423 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.99540 * 180.20756 * 16 15 14 32 32 H 1.08001 * 120.00416 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2726 -0.5390 5 6 3.3673 1.4025 -1.8821 6 1 2.7583 0.8610 -2.5909 7 6 4.3868 2.2299 -2.3324 8 7 4.5271 3.4367 -1.8259 9 14 5.5595 1.6309 -3.6572 10 1 5.0186 1.9849 -4.9941 11 1 6.8849 2.2748 -3.4731 12 1 5.7074 0.1567 -3.5576 13 6 3.3773 2.4036 0.3596 14 6 2.1861 3.3265 0.3399 15 6 2.1400 4.3768 -0.5579 16 6 1.0456 5.2207 -0.5789 17 6 0.0007 5.0206 0.3043 18 7 -1.1686 5.9276 0.2847 19 8 -2.0889 5.7518 1.0629 20 8 -1.2106 6.8500 -0.5097 21 6 0.0483 3.9740 1.2056 22 6 1.1414 3.1263 1.2238 23 35 1.2070 1.6941 2.4569 24 1 -1.0502 -0.0002 0.0003 25 1 3.0097 -0.8196 -0.6188 26 1 3.0093 -0.1250 1.0200 27 1 5.2466 4.0106 -2.1322 28 1 3.5347 2.0351 1.3733 29 1 4.2629 2.9464 0.0289 30 1 2.9576 4.5356 -1.2454 31 1 1.0083 6.0391 -1.2827 32 1 -0.7678 3.8181 1.8956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116917996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:37 Heat of formation + Delta-G solvation = 117.271093 kcal Electronic energy + Delta-G solvation = -21125.090611 eV Core-core repulsion = 17717.474188 eV Total energy + Delta-G solvation = -3407.616423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.78399 -39.11425 -36.32780 -36.20720 -33.06074 -32.52040 -31.59939 -30.94243 -29.11170 -27.55851 -26.39051 -24.72994 -22.49401 -22.14173 -20.76639 -18.74955 -18.32563 -17.79506 -17.18037 -17.09657 -15.65526 -15.24015 -14.80911 -14.24716 -14.07109 -13.85265 -13.50348 -13.31968 -12.84676 -12.39875 -12.02563 -11.71755 -11.33711 -11.24926 -11.10976 -10.86038 -10.83559 -10.81263 -10.60786 -10.47382 -10.18785 -9.88969 -9.57004 -9.27904 -8.79348 -8.50855 -8.37534 -7.45763 -6.61690 -3.57990 0.26389 1.32868 1.64065 1.83744 2.06858 3.11837 3.27658 3.31525 3.47694 3.58192 3.78530 4.18021 4.59603 4.90679 5.07387 5.12476 5.22907 5.34286 5.47673 5.58750 5.97971 6.09619 6.16189 6.23706 6.35469 6.46655 6.63890 6.77602 6.87860 7.20311 7.22138 7.56476 7.91463 8.03286 8.34998 8.66885 9.27345 9.84441 10.46021 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.006421 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.870999 B = 4359.747083 C = 6013.573737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.168 4.168 3 C 0.246 3.754 4 N -0.567 5.567 5 C -0.285 4.285 6 H 0.081 0.919 7 C 0.054 3.946 8 N -0.852 5.852 9 Si 0.869 3.131 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.005 3.995 15 C -0.085 4.085 16 C -0.061 4.061 17 C -0.069 4.069 18 N 0.042 4.958 19 O -0.185 6.185 20 O -0.179 6.179 21 C -0.042 4.042 22 C -0.098 4.098 23 Br -0.037 7.037 24 H 0.199 0.801 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.269 0.731 28 H 0.049 0.951 29 H 0.126 0.874 30 H 0.197 0.803 31 H 0.144 0.856 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -1.956 7.145 7.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.171 4.171 3 C 0.120 3.880 4 N -0.284 5.284 5 C -0.411 4.411 6 H 0.099 0.901 7 C -0.149 4.149 8 N -0.491 5.491 9 Si 0.694 3.306 10 H -0.211 1.211 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.020 3.980 14 C -0.002 4.002 15 C -0.105 4.105 16 C -0.081 4.081 17 C -0.155 4.155 18 N 0.556 4.444 19 O -0.397 6.397 20 O -0.391 6.391 21 C -0.064 4.064 22 C -0.180 4.180 23 Br 0.049 6.951 24 H 0.216 0.784 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.213 0.787 31 H 0.162 0.838 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.285 -2.803 7.586 8.189 hybrid contribution -0.550 0.475 -1.059 1.284 sum -1.835 -2.328 6.527 7.169 Atomic orbital electron populations 1.24574 0.95681 1.02736 1.03905 1.24970 0.96158 0.98307 0.97636 1.18118 0.82103 0.89413 0.98363 1.44537 1.74338 1.04769 1.04726 1.19111 1.11253 1.28340 0.82406 0.90108 1.25215 0.97381 0.94537 0.97730 1.69679 1.30093 1.04539 1.44809 0.86874 0.81695 0.80471 0.81541 1.21150 1.20983 1.19923 1.21544 0.94935 0.87691 0.93821 1.21517 0.97378 0.92204 0.89054 1.22387 0.98242 0.91313 0.98587 1.21304 0.91226 0.99937 0.95635 1.20863 0.90074 0.97606 1.06929 1.43630 1.01843 1.00373 0.98598 1.94475 1.30042 1.78370 1.36781 1.94485 1.86123 1.23613 1.34912 1.20602 0.97595 0.91639 0.96557 1.21618 0.98061 0.97364 1.00913 1.96602 1.98592 1.43822 1.56113 0.78366 0.90069 0.91214 0.92012 0.93249 0.85625 0.78713 0.83837 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.30 18.38 29.55 0.54 -3.75 16 2 C -0.17 -3.05 11.06 -37.12 -0.41 -3.46 16 3 C 0.25 4.41 5.60 -6.83 -0.04 4.38 16 4 N -0.57 -11.65 2.48 -177.95 -0.44 -12.10 16 5 C -0.28 -6.50 9.35 -15.06 -0.14 -6.64 16 6 H 0.08 1.94 8.06 -52.49 -0.42 1.52 16 7 C 0.05 1.20 5.16 -17.43 -0.09 1.11 16 8 N -0.85 -18.62 7.76 55.49 0.43 -18.18 16 9 Si 0.87 17.88 29.69 -169.99 -5.05 12.83 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 13 C 0.14 2.82 4.95 -5.20 -0.03 2.79 16 14 C 0.01 0.10 5.40 -104.59 -0.57 -0.46 16 15 C -0.09 -1.63 9.50 -39.59 -0.38 -2.01 16 16 C -0.06 -1.09 9.55 -39.58 -0.38 -1.47 16 17 C -0.07 -1.26 6.85 -79.96 -0.55 -1.81 16 18 N 0.04 0.79 4.45 33.96 0.15 0.95 16 19 O -0.19 -3.48 18.45 -29.46 -0.54 -4.03 16 20 O -0.18 -3.38 18.45 -29.46 -0.54 -3.92 16 21 C -0.04 -0.74 9.30 -39.56 -0.37 -1.11 16 22 C -0.10 -1.74 6.10 -39.52 -0.24 -1.98 16 23 Br -0.04 -0.57 27.32 -68.01 -1.86 -2.43 16 24 H 0.20 2.88 7.80 -54.08 -0.42 2.46 16 25 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 26 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 27 H 0.27 5.66 8.31 -40.82 -0.34 5.32 16 28 H 0.05 0.88 6.36 -51.93 -0.33 0.55 16 29 H 0.13 2.66 5.21 -51.93 -0.27 2.39 16 30 H 0.20 3.96 5.03 -52.48 -0.26 3.70 16 31 H 0.14 2.32 7.61 -52.49 -0.40 1.93 16 32 H 0.14 2.31 7.61 -52.49 -0.40 1.91 16 LS Contribution 302.66 15.07 4.56 4.56 Total: -1.00 -23.39 302.66 -8.38 -31.77 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.45 Total: 4.97 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.64 Total: -14.41 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.14 Total: -29.34 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -1.09 Total: -7.95 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.05 Total: 12.83 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -1.86 Total: -2.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -23.39 -8.38 -31.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116917996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.036 kcal (2) G-P(sol) polarization free energy of solvation -23.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds