Wall clock time and date at job start Tue Mar 31 2020 20:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46823 * 157.03253 * 3 2 1 5 5 C 1.36944 * 119.99637 * 269.71772 * 4 3 2 6 6 H 1.08002 * 119.99664 * 32.66001 * 5 4 3 7 7 C 1.38808 * 119.99938 * 212.66010 * 5 4 3 8 8 N 1.31622 * 120.00093 * 314.13424 * 7 5 4 9 9 Si 1.86798 * 120.00099 * 134.13713 * 7 5 4 10 10 H 1.48504 * 109.47296 * 89.99577 * 9 7 5 11 11 H 1.48492 * 109.47359 * 209.99805 * 9 7 5 12 12 H 1.48496 * 109.46896 * 329.99845 * 9 7 5 13 13 C 1.46495 * 120.00160 * 90.00201 * 4 3 2 14 14 C 1.50703 * 109.46939 * 262.49007 * 13 4 3 15 15 C 1.38247 * 120.00561 * 268.88020 * 14 13 4 16 16 C 1.38214 * 120.01023 * 179.79077 * 15 14 13 17 17 C 1.38271 * 120.01772 * 0.45925 * 16 15 14 18 18 N 1.48002 * 119.99266 * 179.76838 * 17 16 15 19 19 O 1.21797 * 120.00050 * 180.02562 * 18 17 16 20 20 O 1.21801 * 120.00087 * 0.02562 * 18 17 16 21 21 C 1.38195 * 120.01119 * 359.79132 * 17 16 15 22 22 C 1.38304 * 120.00564 * 89.15400 * 14 13 4 23 23 Br 1.89098 * 120.01065 * 359.97438 * 22 14 13 24 24 H 4.40635 * 5.51577 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47459 * 37.02493 * 3 2 1 26 26 H 1.09006 * 109.46738 * 277.02961 * 3 2 1 27 27 H 0.96997 * 120.00213 * 179.19455 * 8 7 5 28 28 H 1.09001 * 109.47536 * 22.48871 * 13 4 3 29 29 H 1.09002 * 109.47632 * 142.49463 * 13 4 3 30 30 H 1.08004 * 119.99423 * 0.02562 * 15 14 13 31 31 H 1.07999 * 119.99540 * 180.20756 * 16 15 14 32 32 H 1.08001 * 120.00416 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2726 -0.5390 5 6 3.3673 1.4025 -1.8821 6 1 2.7583 0.8610 -2.5909 7 6 4.3868 2.2299 -2.3324 8 7 4.5271 3.4367 -1.8259 9 14 5.5595 1.6309 -3.6572 10 1 5.0186 1.9849 -4.9941 11 1 6.8849 2.2748 -3.4731 12 1 5.7074 0.1567 -3.5576 13 6 3.3773 2.4036 0.3596 14 6 2.1861 3.3265 0.3399 15 6 2.1400 4.3768 -0.5579 16 6 1.0456 5.2207 -0.5789 17 6 0.0007 5.0206 0.3043 18 7 -1.1686 5.9276 0.2847 19 8 -2.0889 5.7518 1.0629 20 8 -1.2106 6.8500 -0.5097 21 6 0.0483 3.9740 1.2056 22 6 1.1414 3.1263 1.2238 23 35 1.2070 1.6941 2.4569 24 1 -1.0502 -0.0002 0.0003 25 1 3.0097 -0.8196 -0.6188 26 1 3.0093 -0.1250 1.0200 27 1 5.2466 4.0106 -2.1322 28 1 3.5347 2.0351 1.3733 29 1 4.2629 2.9464 0.0289 30 1 2.9576 4.5356 -1.2454 31 1 1.0083 6.0391 -1.2827 32 1 -0.7678 3.8181 1.8956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116917996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:36 Heat of formation + Delta-G solvation = 109.836629 kcal Electronic energy + Delta-G solvation = -21125.412994 eV Core-core repulsion = 17717.474188 eV Total energy + Delta-G solvation = -3407.938806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.27038 -40.57423 -37.83302 -37.69967 -34.56075 -33.96098 -33.08353 -32.41713 -30.49133 -29.04083 -27.92307 -26.24412 -23.98934 -23.61812 -22.26779 -20.20986 -19.80920 -19.26898 -18.66691 -18.59036 -17.16983 -16.71210 -16.37564 -15.74650 -15.53548 -15.40491 -14.89852 -14.74101 -14.28283 -13.92587 -13.59046 -13.24611 -12.84124 -12.74086 -12.64562 -12.42949 -12.32903 -12.29626 -12.12548 -12.00257 -11.77002 -11.25654 -10.93635 -10.66145 -10.31575 -10.06397 -9.82269 -9.02934 -8.28191 -5.27635 -1.19628 -0.09902 0.20844 0.36498 0.65294 1.45420 1.59913 1.66821 2.04889 2.21511 2.33363 2.53429 2.89936 3.50974 3.65444 3.76508 3.81309 3.88667 4.02371 4.13473 4.56038 4.65566 4.75183 4.80615 4.93897 5.01715 5.26984 5.32702 5.39834 5.62936 5.67766 5.87477 6.28950 6.53580 6.98150 7.04984 7.67092 8.22590 8.78520 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.006421 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.870999 B = 4359.747083 C = 6013.573737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.193 4.193 3 C 0.244 3.756 4 N -0.578 5.578 5 C -0.304 4.304 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.856 5.856 9 Si 0.912 3.088 10 H -0.295 1.295 11 H -0.286 1.286 12 H -0.281 1.281 13 C 0.150 3.850 14 C 0.000 4.000 15 C -0.097 4.097 16 C -0.056 4.056 17 C -0.072 4.072 18 N 0.041 4.959 19 O -0.180 6.180 20 O -0.185 6.185 21 C -0.038 4.038 22 C -0.101 4.101 23 Br -0.012 7.012 24 H 0.223 0.777 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.270 0.730 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.184 0.816 31 H 0.158 0.842 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 -2.033 8.178 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.195 4.195 3 C 0.119 3.881 4 N -0.296 5.296 5 C -0.431 4.431 6 H 0.078 0.922 7 C -0.170 4.170 8 N -0.495 5.495 9 Si 0.739 3.261 10 H -0.222 1.222 11 H -0.212 1.212 12 H -0.207 1.207 13 C 0.025 3.975 14 C -0.007 4.007 15 C -0.117 4.117 16 C -0.076 4.076 17 C -0.158 4.158 18 N 0.555 4.445 19 O -0.393 6.393 20 O -0.396 6.396 21 C -0.059 4.059 22 C -0.182 4.182 23 Br 0.074 6.926 24 H 0.240 0.760 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.201 0.799 31 H 0.175 0.825 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.171 -2.869 8.618 9.339 hybrid contribution -0.375 0.536 -1.285 1.442 sum -2.546 -2.333 7.333 8.105 Atomic orbital electron populations 1.25185 0.96417 1.01599 1.02941 1.25076 0.96546 0.99319 0.98588 1.18197 0.82335 0.88441 0.99138 1.44436 1.75313 1.05879 1.03959 1.18927 1.12038 1.28878 0.83268 0.92171 1.25489 0.97869 0.94653 0.98960 1.69753 1.30102 1.04368 1.45284 0.86251 0.80506 0.79493 0.79883 1.22241 1.21166 1.20650 1.21326 0.94487 0.87556 0.94084 1.21552 0.97326 0.92450 0.89333 1.22285 0.98518 0.92064 0.98820 1.21395 0.90683 0.99856 0.95631 1.20980 0.89886 0.97738 1.07151 1.43694 1.01916 1.00385 0.98533 1.94470 1.30036 1.78223 1.36580 1.94492 1.86238 1.23831 1.35076 1.20799 0.97843 0.90926 0.96318 1.21730 0.97512 0.97957 1.01044 1.96620 1.98542 1.42621 1.54829 0.76034 0.90071 0.89522 0.91948 0.91864 0.87443 0.79923 0.82452 0.82087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -7.81 18.38 74.32 1.37 -6.44 16 2 C -0.19 -6.72 11.06 31.13 0.34 -6.37 16 3 C 0.24 8.55 5.60 84.57 0.47 9.03 16 4 N -0.58 -23.57 2.48 -716.91 -1.78 -25.35 16 5 C -0.30 -14.02 9.35 84.03 0.79 -13.23 16 6 H 0.06 2.97 8.06 -2.91 -0.02 2.95 16 7 C 0.03 1.46 5.16 84.86 0.44 1.89 16 8 N -0.86 -37.59 7.76 21.65 0.17 -37.42 16 9 Si 0.91 37.18 29.69 68.60 2.04 39.22 16 10 H -0.30 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.15 5.77 4.95 85.63 0.42 6.19 16 14 C 0.00 -0.01 5.40 -19.85 -0.11 -0.12 16 15 C -0.10 -3.64 9.50 22.27 0.21 -3.43 16 16 C -0.06 -1.92 9.55 22.27 0.21 -1.71 16 17 C -0.07 -2.49 6.85 36.38 0.25 -2.24 16 18 N 0.04 1.45 4.45 -46.48 -0.21 1.25 16 19 O -0.18 -6.31 18.45 18.89 0.35 -5.96 16 20 O -0.18 -6.65 18.45 18.88 0.35 -6.31 16 21 C -0.04 -1.22 9.30 22.28 0.21 -1.01 16 22 C -0.10 -3.38 6.10 22.31 0.14 -3.25 16 23 Br -0.01 -0.34 27.32 -20.37 -0.56 -0.90 16 24 H 0.22 5.76 7.80 -4.41 -0.03 5.73 16 25 H 0.08 2.79 8.04 -2.39 -0.02 2.77 16 26 H 0.09 2.67 7.51 -2.38 -0.02 2.65 16 27 H 0.27 11.39 8.31 -92.71 -0.77 10.62 16 28 H 0.06 2.19 6.36 -2.39 -0.02 2.17 16 29 H 0.11 4.55 5.21 -2.39 -0.01 4.54 16 30 H 0.18 7.45 5.03 -2.91 -0.01 7.43 16 31 H 0.16 4.89 7.61 -2.91 -0.02 4.86 16 32 H 0.16 4.66 7.61 -2.91 -0.02 4.63 16 Total: -1.00 -47.66 302.66 6.27 -41.40 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.17 Total: 14.78 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.74 Total: -20.69 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -1.82 Total: -61.53 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.70 Total: -12.27 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.04 Total: 39.22 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.56 Total: -0.90 kcal Total: -47.66 6.27 -41.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116917996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.232 kcal (2) G-P(sol) polarization free energy of solvation -47.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds