Wall clock time and date at job start Tue Mar 31 2020 21:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48505 * 109.46734 * 275.30657 * 3 2 1 5 5 H 1.48502 * 109.46898 * 35.30210 * 3 2 1 6 6 H 1.48492 * 109.47130 * 155.30458 * 3 2 1 7 7 C 1.39933 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99376 * 346.74670 * 7 2 1 9 9 C 1.41410 * 120.00542 * 166.75050 * 7 2 1 10 10 C 1.40780 * 120.20293 * 331.36371 * 9 7 2 11 11 C 1.37650 * 119.88482 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32438 * 359.73674 * 11 10 9 13 13 C 1.39276 * 120.42759 * 0.51876 * 12 11 10 14 14 N 1.39842 * 119.95078 * 179.76062 * 13 12 11 15 15 C 1.34780 * 120.00034 * 326.45439 * 14 13 12 16 16 O 1.21705 * 119.99953 * 355.09560 * 15 14 13 17 17 C 1.46639 * 120.00030 * 175.10667 * 15 14 13 18 18 C 1.37897 * 126.23729 * 180.02562 * 17 15 14 19 19 C 1.39828 * 107.08628 * 179.72990 * 18 17 15 20 20 S 1.76196 * 126.06454 * 180.02562 * 19 18 17 21 21 O 1.42105 * 106.40569 * 203.53991 * 20 19 18 22 22 O 1.42104 * 106.40220 * 336.45678 * 20 19 18 23 23 F 1.61001 * 107.22223 * 89.99666 * 20 19 18 24 24 C 1.35449 * 107.86870 * 359.97438 * 19 18 17 25 25 N 1.35546 * 108.87670 * 0.02562 * 24 19 18 26 26 H 0.97001 * 125.68565 * 179.97438 * 25 24 19 27 27 C 1.38301 * 120.09630 * 359.48694 * 13 12 11 28 28 H 0.96994 * 119.99939 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.05996 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.83712 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.78612 * 180.28094 * 12 11 10 32 32 H 0.96996 * 120.00280 * 146.45212 * 14 13 12 33 33 H 1.08000 * 126.45284 * 359.72829 * 18 17 15 34 34 H 1.08008 * 125.56365 * 179.97438 * 24 19 18 35 35 H 1.08003 * 120.15844 * 180.23616 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3777 2.1111 -1.3941 5 1 1.5003 2.6178 0.8091 6 1 3.5914 1.4104 0.5849 7 6 2.0080 -1.2118 -0.0005 8 1 1.4895 -2.1348 0.2135 9 6 3.3938 -1.2281 -0.2812 10 6 3.9599 -0.2420 -1.1113 11 6 5.3096 -0.2643 -1.3806 12 6 6.1156 -1.2497 -0.8343 13 6 5.5687 -2.2348 -0.0156 14 7 6.3907 -3.2277 0.5265 15 6 7.4507 -3.6806 -0.1719 16 8 7.6414 -3.2913 -1.3091 17 6 8.3740 -4.6427 0.4383 18 6 9.4932 -5.1874 -0.1551 19 6 10.0784 -6.0451 0.7814 20 16 11.5391 -7.0009 0.5419 21 8 11.4635 -8.0856 1.4569 22 8 11.6783 -7.1763 -0.8614 23 9 12.7841 -6.0950 1.0125 24 6 9.3239 -6.0099 1.9057 25 7 8.2849 -5.1616 1.7102 26 1 7.5937 -4.9547 2.3584 27 6 4.2147 -2.2291 0.2665 28 1 -0.4850 0.8400 0.0004 29 1 3.3363 0.5302 -1.5367 30 1 5.7430 0.4923 -2.0178 31 1 7.1743 -1.2563 -1.0477 32 1 6.1981 -3.5904 1.4053 33 1 9.8504 -4.9889 -1.1548 34 1 9.5179 -6.5675 2.8101 35 1 3.7902 -2.9903 0.9043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121185179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:42 Heat of formation + Delta-G solvation = -94.382120 kcal Electronic energy + Delta-G solvation = -25196.052953 eV Core-core repulsion = 21008.102739 eV Total energy + Delta-G solvation = -4187.950214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.43130 -41.96976 -39.71276 -37.90585 -37.55032 -36.57787 -34.81177 -33.41072 -32.05847 -30.58388 -30.25081 -28.65349 -25.26945 -23.92056 -22.90705 -21.34832 -21.23121 -20.54836 -20.34409 -19.14249 -18.03179 -17.91690 -17.04217 -16.83398 -16.27810 -16.11204 -15.61516 -15.51874 -14.80824 -14.70282 -14.54243 -14.31962 -14.10338 -14.00681 -13.60572 -13.22957 -13.16147 -12.79480 -12.76985 -12.76504 -12.67063 -12.18129 -11.95533 -11.81525 -11.18464 -10.89859 -10.74902 -10.40697 -10.25716 -9.97902 -9.74467 -9.52428 -9.13219 -9.02840 -7.81883 -7.32231 -7.02128 -4.61677 -0.41339 0.92059 1.38585 2.31994 2.40099 2.52082 2.72662 3.04416 3.08914 3.11711 3.16325 3.22988 3.28216 3.69461 3.90133 4.28578 4.40670 4.50075 4.60786 5.01254 5.29121 5.30055 5.73957 5.90493 6.05060 6.17503 6.19488 6.33924 6.55952 6.59016 6.65129 6.99919 7.13561 7.31022 7.52137 7.67502 7.72294 7.92246 8.17675 8.25887 8.50505 8.69286 10.00148 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.035921 B = 0.002150 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.291808 B =13018.610822 C =13359.980149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.241 1.241 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.239 4.239 11 C -0.066 4.066 12 C -0.230 4.230 13 C 0.163 3.837 14 N -0.665 5.665 15 C 0.580 3.420 16 O -0.498 6.498 17 C -0.042 4.042 18 C -0.020 4.020 19 C -0.775 4.775 20 S 2.701 3.299 21 O -0.936 6.936 22 O -0.927 6.927 23 F -0.476 7.476 24 C 0.157 3.843 25 N -0.521 5.521 26 H 0.428 0.572 27 C -0.231 4.231 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.396 0.604 33 H 0.171 0.829 34 H 0.198 0.802 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.333 -9.835 7.592 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.164 1.164 7 C -0.473 4.473 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.258 4.258 11 C -0.085 4.085 12 C -0.251 4.251 13 C 0.072 3.928 14 N -0.308 5.308 15 C 0.366 3.634 16 O -0.372 6.372 17 C -0.154 4.154 18 C -0.045 4.045 19 C -0.870 4.870 20 S 2.789 3.211 21 O -0.934 6.934 22 O -0.925 6.925 23 F -0.475 7.475 24 C 0.012 3.988 25 N -0.115 5.115 26 H 0.267 0.733 27 C -0.252 4.252 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.230 0.770 33 H 0.188 0.812 34 H 0.214 0.786 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.623 -9.751 6.726 22.071 hybrid contribution -0.960 1.038 0.925 1.689 sum 17.663 -8.713 7.651 21.129 Atomic orbital electron populations 1.69650 1.08030 1.30345 1.35406 1.26181 0.94849 1.01803 0.90885 0.86270 0.81160 0.79474 0.78796 1.19731 1.22144 1.16415 1.19465 0.91356 0.95667 1.40841 0.89166 1.17477 0.93075 0.90351 0.88944 1.21033 0.95057 1.03770 1.05942 1.20486 0.93547 0.96762 0.97679 1.20332 0.99117 0.98073 1.07609 1.17441 0.89279 0.88138 0.97944 1.43330 1.27719 1.39502 1.20234 1.16929 0.80448 0.80377 0.85633 1.90913 1.72744 1.57036 1.16459 1.20878 1.02399 1.05855 0.86239 1.20980 0.92194 0.92501 0.98779 1.30554 1.25553 1.26779 1.04123 1.02881 0.71562 0.72272 0.74369 1.93731 1.86375 1.48133 1.65204 1.93751 1.85553 1.83731 1.29471 1.93682 1.73271 1.86483 1.94066 1.21936 0.86663 0.91738 0.98502 1.42462 1.22631 1.33077 1.13307 0.73293 1.20654 0.90194 1.05192 1.09194 0.90338 0.88219 0.88220 0.87322 0.77050 0.81152 0.78562 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.06 13.93 55.55 0.77 -20.28 16 2 C 0.08 2.08 5.47 -17.35 -0.09 1.98 16 3 Si 0.92 20.20 24.37 -169.99 -4.14 16.06 16 4 H -0.27 -5.85 6.77 56.52 0.38 -5.47 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.24 -5.38 6.48 56.52 0.37 -5.01 16 7 C -0.44 -11.58 9.61 -37.74 -0.36 -11.94 16 8 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.11 2.56 5.19 -106.85 -0.55 2.01 16 10 C -0.24 -5.62 6.91 -38.84 -0.27 -5.89 16 11 C -0.07 -1.43 10.02 -39.69 -0.40 -1.82 16 12 C -0.23 -4.87 8.66 -39.09 -0.34 -5.21 16 13 C 0.16 3.25 6.26 -83.79 -0.52 2.73 16 14 N -0.66 -9.92 5.33 -11.10 -0.06 -9.98 16 15 C 0.58 8.80 7.52 -12.87 -0.10 8.71 16 16 O -0.50 -9.55 14.55 5.18 0.08 -9.47 16 17 C -0.04 -0.46 7.05 -81.99 -0.58 -1.04 16 18 C -0.02 -0.21 10.44 -39.11 -0.41 -0.62 16 19 C -0.78 -6.09 6.23 -39.98 -0.25 -6.34 16 20 S 2.70 19.81 7.00 -107.50 -0.75 19.05 16 21 O -0.94 -8.38 17.87 -57.17 -1.02 -9.40 16 22 O -0.93 -9.93 17.89 -57.17 -1.02 -10.96 16 23 F -0.48 -3.38 17.91 2.25 0.04 -3.34 16 24 C 0.16 0.90 11.64 -16.91 -0.20 0.70 16 25 N -0.52 -3.48 6.00 -9.39 -0.06 -3.54 16 26 H 0.43 1.49 8.20 -40.82 -0.33 1.15 16 27 C -0.23 -4.99 9.70 -38.68 -0.38 -5.36 16 28 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 29 H 0.10 2.34 4.20 -52.49 -0.22 2.12 16 30 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 31 H 0.11 2.25 6.40 -52.48 -0.34 1.91 16 32 H 0.40 4.21 7.95 -40.82 -0.32 3.89 16 33 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.20 0.32 8.06 -52.48 -0.42 -0.11 16 35 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -35.35 325.23 -8.23 -43.58 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -2.52 Total: 5.48 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -4.45 Total: -22.10 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.66 Total: -33.80 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.97 Total: -29.83 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.14 Total: 16.06 kcal Atomic # 16 Polarization: 19.81 SS G_CDS: -0.75 Total: 19.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.35 -8.23 -43.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121185179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.799 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds