Wall clock time and date at job start Tue Mar 31 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47460 * 337.64583 * 3 2 1 5 5 N 1.46893 * 109.47356 * 177.80810 * 4 3 2 6 6 C 1.46894 * 111.00439 * 195.49641 * 5 4 3 7 7 C 1.50704 * 109.46867 * 66.04810 * 6 5 4 8 8 H 1.07998 * 120.00080 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99987 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99799 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00148 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46803 * 90.00034 * 11 9 7 13 13 H 1.48497 * 109.46939 * 209.99907 * 11 9 7 14 14 H 1.48500 * 109.46990 * 330.00166 * 11 9 7 15 15 C 1.46912 * 110.99676 * 71.54404 * 5 4 3 16 16 C 1.50699 * 109.46946 * 198.48284 * 15 5 4 17 17 C 1.38341 * 120.44199 * 254.04890 * 16 15 5 18 18 C 1.38913 * 118.49822 * 179.76108 * 17 16 15 19 19 Br 1.89091 * 120.34862 * 180.24189 * 18 17 16 20 20 C 1.38151 * 119.30234 * 0.51586 * 18 17 16 21 21 N 1.31947 * 120.84473 * 359.74809 * 20 18 17 22 22 C 1.32418 * 121.62768 * 359.97438 * 21 20 18 23 23 N 1.39055 * 119.68659 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47270 * 217.64925 * 3 2 1 25 25 H 1.09001 * 109.47053 * 97.64750 * 3 2 1 26 26 H 1.09010 * 109.46443 * 57.81182 * 4 3 2 27 27 H 1.08993 * 109.47341 * 297.81525 * 4 3 2 28 28 H 1.08998 * 109.47572 * 186.05039 * 6 5 4 29 29 H 1.09003 * 109.47111 * 306.05384 * 6 5 4 30 30 H 0.96996 * 119.99700 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.46565 * 318.48301 * 15 5 4 32 32 H 1.08997 * 109.46946 * 78.47915 * 15 5 4 33 33 H 1.08002 * 120.75576 * 0.02562 * 17 16 15 34 34 H 1.08001 * 119.57216 * 179.72513 * 20 18 17 35 35 H 0.97004 * 119.99280 * 186.19938 * 23 22 21 36 36 H 0.96996 * 120.00386 * 6.19316 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3332 0.5486 5 7 4.5866 -1.3530 0.4998 6 6 5.1005 -2.7193 0.6636 7 6 4.6911 -3.5554 -0.5216 8 1 4.1079 -3.1156 -1.3170 9 6 5.0612 -4.8818 -0.5903 10 7 5.7710 -5.4175 0.3787 11 14 4.5543 -5.9180 -2.0596 12 1 5.5987 -5.8294 -3.1116 13 1 4.3964 -7.3327 -1.6367 14 1 3.2650 -5.4155 -2.5985 15 6 5.1591 -0.4508 1.5081 16 6 6.5903 -0.1422 1.1512 17 6 7.6293 -0.7140 1.8636 18 6 8.9331 -0.4054 1.4969 19 35 10.3928 -1.1627 2.4304 20 6 9.1521 0.4651 0.4467 21 7 8.1408 0.9995 -0.2111 22 6 6.8844 0.7257 0.1050 23 7 5.8496 1.3122 -0.6152 24 1 2.9710 0.8145 0.6277 25 1 2.9712 0.1376 -1.0185 26 1 2.7239 -2.1498 -0.0562 27 1 2.7878 -1.4524 1.5803 28 1 6.1881 -2.6929 0.7312 29 1 4.6903 -3.1550 1.5746 30 1 6.0310 -6.3507 0.3305 31 1 4.5839 0.4746 1.5359 32 1 5.1237 -0.9301 2.4863 33 1 7.4313 -1.3885 2.6835 34 1 10.1640 0.7115 0.1609 35 1 4.9302 1.1869 -0.3324 36 1 6.0470 1.8466 -1.4002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139454052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:59 Heat of formation + Delta-G solvation = 47.833506 kcal Electronic energy + Delta-G solvation = -20930.944610 eV Core-core repulsion = 17688.442993 eV Total energy + Delta-G solvation = -3242.501617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32973 -38.88787 -37.40725 -35.75380 -34.74208 -33.93920 -32.59450 -31.73402 -29.62781 -28.70748 -26.75305 -24.85547 -23.97856 -23.02732 -21.42346 -18.98992 -18.43150 -18.35328 -18.10707 -16.77479 -16.47714 -16.33473 -15.95651 -15.64784 -15.22015 -15.13997 -14.89401 -14.36479 -14.13199 -14.00373 -13.85423 -13.48450 -13.39657 -13.19418 -12.78054 -12.62470 -12.53559 -12.38425 -12.23173 -11.84284 -11.64722 -11.28020 -11.21850 -10.99448 -10.55852 -10.44422 -10.41694 -9.02285 -8.58602 -8.14342 -6.21238 0.24435 0.37458 0.80355 1.42177 1.43769 1.52332 1.78667 1.87011 2.42571 2.65269 2.86617 3.04346 3.20447 3.58789 3.71918 3.95268 3.99737 4.14353 4.16666 4.35221 4.39849 4.65750 4.68658 4.80350 5.00930 5.05203 5.07627 5.19265 5.35347 5.42157 5.54108 5.71559 6.12388 6.32430 6.43457 6.59726 6.62626 6.68398 6.95537 7.36138 7.47502 8.95829 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.004524 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.419143 B = 6187.360209 C = 8260.744929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.242 3.758 3 C -0.018 4.018 4 C 0.061 3.939 5 N -0.522 5.522 6 C 0.214 3.786 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.952 3.048 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.095 3.905 16 C -0.185 4.185 17 C -0.011 4.011 18 C -0.216 4.216 19 Br -0.048 7.048 20 C 0.176 3.824 21 N -0.555 5.555 22 C 0.432 3.568 23 N -0.821 5.821 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.010 0.990 29 H -0.036 1.036 30 H 0.260 0.740 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.131 0.869 34 H 0.180 0.820 35 H 0.417 0.583 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 15.291 3.045 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.075 4.075 3 C -0.058 4.058 4 C -0.068 4.068 5 N -0.246 5.246 6 C 0.088 3.912 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.779 3.221 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.188 1.188 15 C -0.033 4.033 16 C -0.194 4.194 17 C -0.039 4.039 18 C -0.301 4.301 19 Br 0.035 6.965 20 C 0.016 3.984 21 N -0.274 5.274 22 C 0.192 3.808 23 N -0.365 5.365 24 H 0.157 0.843 25 H 0.154 0.846 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.028 0.972 29 H -0.018 1.018 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.149 0.851 34 H 0.196 0.804 35 H 0.250 0.750 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.597 15.596 2.289 16.727 hybrid contribution -0.509 -1.928 0.598 2.081 sum 5.089 13.668 2.887 14.868 Atomic orbital electron populations 1.81227 1.14829 1.10491 1.11188 1.29490 0.95455 0.91351 0.91166 1.19516 0.79299 0.99838 1.07191 1.21884 0.88234 0.96947 0.99771 1.62001 1.05282 1.09774 1.47574 1.19295 0.94313 0.83705 0.93911 1.21502 1.33044 0.94571 1.06135 0.91397 1.25738 0.95537 0.99465 0.98588 1.70066 1.39200 1.13732 1.34104 0.85636 0.78892 0.77793 0.79821 1.20513 1.21528 1.18806 1.20999 0.90652 0.98003 0.93678 1.20113 0.96747 1.02362 1.00147 1.21314 0.90761 0.94303 0.97481 1.22474 0.93270 1.09265 1.05056 1.96613 1.40933 1.83692 1.75215 1.22653 0.98461 0.89186 0.88076 1.67369 0.98636 1.29390 1.31982 1.18310 0.87552 0.87346 0.87603 1.42196 1.06285 1.56055 1.31940 0.84277 0.84581 0.91239 0.94496 0.97199 1.01781 0.93108 0.86936 0.94240 0.85082 0.80353 0.74951 0.75843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.79 18.54 20.01 0.37 -14.42 16 2 C 0.24 5.56 15.43 89.44 1.38 6.94 16 3 C -0.02 -0.31 4.76 28.79 0.14 -0.17 16 4 C 0.06 1.66 4.76 86.31 0.41 2.07 16 5 N -0.52 -16.64 4.31 -905.36 -3.90 -20.54 16 6 C 0.21 9.82 4.55 85.56 0.39 10.21 16 7 C -0.51 -26.31 8.29 25.60 0.21 -26.10 16 8 H 0.07 3.35 7.25 -2.91 -0.02 3.33 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -53.80 13.29 21.45 0.28 -53.51 16 11 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.09 2.42 4.20 85.55 0.36 2.78 16 16 C -0.19 -5.26 4.78 -19.64 -0.09 -5.35 16 17 C -0.01 -0.34 8.94 22.46 0.20 -0.13 16 18 C -0.22 -6.17 6.25 22.41 0.14 -6.03 16 19 Br -0.05 -1.25 33.73 -20.37 -0.69 -1.94 16 20 C 0.18 4.70 10.93 84.65 0.93 5.62 16 21 N -0.55 -15.46 10.39 -193.17 -2.01 -17.46 16 22 C 0.43 11.44 7.73 133.03 1.03 12.47 16 23 N -0.82 -15.35 9.00 -55.43 -0.50 -15.85 16 24 H 0.14 1.24 6.17 -2.39 -0.01 1.23 16 25 H 0.14 1.86 8.03 -2.39 -0.02 1.84 16 26 H 0.07 2.35 6.59 -2.38 -0.02 2.33 16 27 H 0.04 0.99 8.06 -2.39 -0.02 0.97 16 28 H 0.01 0.51 6.87 -2.39 -0.02 0.49 16 29 H -0.04 -1.81 8.12 -2.39 -0.02 -1.83 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.11 1.87 5.45 -2.39 -0.01 1.86 16 32 H 0.04 1.08 7.86 -2.39 -0.02 1.06 16 33 H 0.13 4.05 8.04 -2.91 -0.02 4.02 16 34 H 0.18 3.79 8.06 -2.91 -0.02 3.76 16 35 H 0.42 6.09 5.51 -92.71 -0.51 5.58 16 36 H 0.41 6.37 8.95 -92.71 -0.83 5.54 16 Total: -1.00 -67.52 329.48 0.94 -66.57 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -0.19 Total: 9.11 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.55 Total: 3.06 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -5.75 Total: -121.78 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.69 Total: -1.94 kcal Total: -67.52 0.94 -66.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139454052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.408 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds