Wall clock time and date at job start Tue Mar 31 2020 21:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47052 * 2 1 4 4 C 1.46894 * 110.99962 * 302.18972 * 3 2 1 5 5 C 1.50709 * 109.46952 * 289.06725 * 4 3 2 6 6 H 1.08002 * 119.99846 * 4.77562 * 5 4 3 7 7 C 1.37871 * 119.99830 * 184.77724 * 5 4 3 8 8 N 1.31511 * 120.00518 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99870 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47202 * 89.99315 * 9 7 5 11 11 H 1.48500 * 109.47264 * 209.99927 * 9 7 5 12 12 H 1.48502 * 109.47080 * 329.99817 * 9 7 5 13 13 C 1.46901 * 110.99796 * 66.13981 * 3 2 1 14 14 C 1.50704 * 109.47019 * 76.12432 * 13 3 2 15 15 C 1.35459 * 126.41649 * 94.02880 * 14 13 3 16 16 N 1.33339 * 108.60379 * 179.73688 * 15 14 13 17 17 C 1.32327 * 109.13247 * 359.97438 * 16 15 14 18 18 C 1.40901 * 133.22410 * 179.97438 * 17 16 15 19 19 N 1.31148 * 119.72019 * 180.02562 * 18 17 16 20 20 C 1.33558 * 121.36177 * 359.97438 * 19 18 17 21 21 Br 1.89111 * 119.38127 * 180.02562 * 20 19 18 22 22 C 1.35091 * 121.23423 * 359.97438 * 20 19 18 23 23 N 1.36029 * 126.41753 * 273.70781 * 14 13 3 24 24 H 1.08999 * 109.46990 * 66.13227 * 1 2 3 25 25 H 1.08999 * 109.47033 * 186.13659 * 1 2 3 26 26 H 1.09000 * 109.47207 * 306.13302 * 1 2 3 27 27 H 1.08999 * 109.47020 * 240.00394 * 2 1 3 28 28 H 1.09004 * 109.47051 * 120.00134 * 2 1 3 29 29 H 1.08998 * 109.47685 * 49.06328 * 4 3 2 30 30 H 1.09003 * 109.47381 * 169.07244 * 4 3 2 31 31 H 0.97005 * 120.00119 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47589 * 316.12258 * 13 3 2 33 33 H 1.09002 * 109.47133 * 196.12129 * 13 3 2 34 34 H 1.07998 * 125.70303 * 359.72494 * 15 14 13 35 35 H 1.07996 * 120.14255 * 0.04693 * 18 17 16 36 36 H 1.07997 * 120.14211 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5064 2.1248 -1.1606 5 6 2.1744 1.6200 -2.4137 6 1 2.8488 0.7779 -2.3643 7 6 1.9245 2.2332 -3.6230 8 7 1.1029 3.2583 -3.6832 9 14 2.7519 1.6069 -5.1763 10 1 1.8981 0.5692 -5.8081 11 1 2.9440 2.7342 -6.1237 12 1 4.0716 1.0195 -4.8318 13 6 1.6721 2.0662 1.2542 14 6 2.5900 1.5952 2.3528 15 6 3.7417 2.1887 2.7481 16 7 4.2643 1.4790 3.7487 17 6 3.4774 0.4466 4.0053 18 6 3.5415 -0.6071 4.9386 19 7 2.5931 -1.5126 4.9631 20 6 1.5597 -1.4598 4.1187 21 35 0.2230 -2.7949 4.2035 22 6 1.4508 -0.4699 3.2058 23 7 2.4141 0.4978 3.1371 24 1 -0.3633 0.4158 -0.9398 25 1 -0.3633 -1.0218 0.1099 26 1 -0.3633 0.6060 0.8300 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4292 1.9771 -1.2384 30 1 1.7195 3.1868 -1.0379 31 1 0.9269 3.6894 -4.5341 32 1 0.6402 1.8357 1.5192 33 1 1.7822 3.1430 1.1255 34 1 4.1660 3.0866 2.3237 35 1 4.3679 -0.6686 5.6312 36 1 0.6074 -0.4441 2.5318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140240475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:09 Heat of formation + Delta-G solvation = 99.355152 kcal Electronic energy + Delta-G solvation = -21242.411457 eV Core-core repulsion = 18002.143986 eV Total energy + Delta-G solvation = -3240.267471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.33490 -39.80411 -38.98485 -35.57955 -34.70968 -33.37722 -32.43414 -30.94715 -30.22847 -28.92338 -26.84299 -25.39738 -25.02612 -24.02019 -22.66709 -21.18001 -19.39587 -18.46892 -18.28064 -17.68907 -16.98712 -16.89798 -16.54452 -16.33417 -15.68653 -15.35107 -14.92484 -14.74054 -14.43120 -14.18039 -13.88803 -13.46473 -13.18173 -13.06328 -12.91632 -12.69868 -12.59827 -12.46940 -11.95787 -11.89073 -11.73768 -11.67153 -11.50188 -11.30086 -11.22975 -10.58355 -10.01531 -9.28396 -9.01755 -8.18168 -6.25992 -0.79383 -0.14234 -0.04530 1.24569 1.40761 1.42541 1.52655 1.57524 2.26523 2.41301 2.86070 2.97516 3.13737 3.20457 3.37169 3.56415 3.76216 3.82214 4.07439 4.14797 4.28567 4.29837 4.43464 4.58704 4.75893 4.81525 4.93784 4.96803 5.15894 5.29999 5.36950 5.42708 5.49309 5.66461 6.05967 6.22242 6.29415 6.53348 6.56469 6.87666 7.42665 8.91658 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.003572 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.174120 B = 7836.236765 C = 9007.819563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.123 3.877 14 C -0.016 4.016 15 C 0.046 3.954 16 N -0.469 5.469 17 C 0.138 3.862 18 C 0.221 3.779 19 N -0.459 5.459 20 C 0.046 3.954 21 Br 0.037 6.963 22 C 0.051 3.949 23 N -0.350 5.350 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.059 0.941 29 H -0.012 1.012 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.206 0.794 35 H 0.230 0.770 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -9.937 18.602 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.068 4.068 3 N -0.262 5.262 4 C 0.080 3.920 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.006 4.006 14 C -0.133 4.133 15 C -0.107 4.107 16 N -0.191 5.191 17 C -0.106 4.106 18 C 0.036 3.964 19 N -0.172 5.172 20 C -0.152 4.152 21 Br 0.120 6.880 22 C -0.077 4.077 23 N -0.025 5.025 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.005 0.995 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.222 0.778 35 H 0.246 0.754 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.371 -10.899 19.357 22.256 hybrid contribution -1.082 0.810 -2.194 2.577 sum -2.453 -10.089 17.162 20.059 Atomic orbital electron populations 1.22339 0.97400 1.02775 1.01760 1.22013 0.93572 0.90429 1.00799 1.62227 1.59989 1.02468 1.01542 1.19498 0.92887 0.92647 0.86986 1.21385 1.26400 1.15247 0.92543 0.92796 1.25703 0.95951 0.95159 1.02089 1.70040 1.37239 1.23048 1.26721 0.85558 0.78999 0.77903 0.79212 1.20066 1.20827 1.19505 1.20560 0.94140 0.99780 0.86148 1.21508 1.02651 0.90123 0.98977 1.22881 0.91882 1.01494 0.94452 1.70565 1.27248 1.04354 1.16886 1.22502 0.88247 1.01296 0.98575 1.23380 0.96627 0.83602 0.92773 1.68121 1.01272 1.25555 1.22218 1.21997 0.98364 0.97160 0.97634 1.96834 1.44246 1.48640 1.98285 1.22541 0.95116 0.89019 1.00982 1.42787 1.17408 1.17677 1.24613 0.93417 0.90234 0.92261 0.92175 0.92311 0.99460 0.96960 0.92762 0.92938 0.87716 0.77757 0.75357 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 8.36 71.98 0.60 -5.03 16 2 C 0.06 2.10 5.58 86.30 0.48 2.58 16 3 N -0.54 -21.00 4.58 -905.34 -4.15 -25.14 16 4 C 0.21 9.90 4.52 85.56 0.39 10.28 16 5 C -0.52 -27.84 8.68 25.60 0.22 -27.62 16 6 H 0.05 2.93 7.27 -2.91 -0.02 2.91 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -53.34 13.29 21.44 0.28 -53.06 16 9 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.12 3.84 5.35 85.56 0.46 4.30 16 14 C -0.02 -0.46 6.07 41.27 0.25 -0.21 16 15 C 0.05 1.30 11.76 83.82 0.99 2.29 16 16 N -0.47 -13.40 11.30 -194.17 -2.19 -15.60 16 17 C 0.14 3.63 7.85 134.07 1.05 4.68 16 18 C 0.22 4.54 11.34 85.45 0.97 5.51 16 19 N -0.46 -10.35 10.38 -190.39 -1.98 -12.32 16 20 C 0.05 1.06 7.09 83.71 0.59 1.65 16 21 Br 0.04 0.69 33.84 -20.37 -0.69 0.00 16 22 C 0.05 1.22 8.82 83.21 0.73 1.96 16 23 N -0.35 -9.53 2.76 -338.88 -0.93 -10.47 16 24 H 0.05 1.76 6.49 -2.39 -0.02 1.75 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.61 5.66 -2.39 -0.01 1.60 16 27 H 0.06 2.38 7.16 -2.39 -0.02 2.37 16 28 H 0.06 1.85 5.01 -2.39 -0.01 1.84 16 29 H -0.01 -0.62 5.85 -2.39 -0.01 -0.63 16 30 H 0.01 0.64 7.70 -2.39 -0.02 0.62 16 31 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.05 1.52 5.86 -2.39 -0.01 1.51 16 33 H 0.10 3.20 7.66 -2.39 -0.02 3.19 16 34 H 0.21 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.23 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.18 4.05 6.15 -2.91 -0.02 4.03 16 Total: -1.00 -62.71 315.24 0.69 -62.02 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.12 Total: 7.95 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 7.20 Total: 1.36 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -8.97 Total: -116.59 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 35 Polarization: 0.69 SS G_CDS: -0.69 Total: 0.00 kcal Total: -62.71 0.69 -62.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140240475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.375 kcal (2) G-P(sol) polarization free energy of solvation -62.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds