Wall clock time and date at job start Tue Mar 31 2020 20:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47291 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47123 * 119.99807 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99524 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46692 * 179.97438 * 9 7 2 11 11 O 1.21272 * 119.99915 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99766 * 179.97438 * 10 9 7 13 13 C 1.39316 * 119.99813 * 175.49227 * 12 10 9 14 14 C 1.38851 * 120.17252 * 34.74192 * 13 12 10 15 15 C 1.38017 * 120.25245 * 179.71358 * 14 13 12 16 16 C 1.38774 * 120.29531 * 0.60237 * 15 14 13 17 17 Br 1.89102 * 119.93745 * 179.69316 * 16 15 14 18 18 C 1.37481 * 120.12522 * 359.66643 * 16 15 14 19 19 C 1.39805 * 120.36763 * 0.02562 * 18 16 15 20 20 C 1.47189 * 108.31891 * 179.97438 * 19 18 16 21 21 O 1.21594 * 124.82618 * 180.02562 * 20 19 18 22 22 N 1.34410 * 110.35602 * 359.97438 * 20 19 18 23 23 C 1.46739 * 108.75267 * 0.02562 * 22 20 19 24 24 H 0.96994 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47293 * 59.99683 * 9 7 2 26 26 H 1.09002 * 109.47097 * 299.99201 * 9 7 2 27 27 H 0.97003 * 120.00145 * 355.49654 * 12 10 9 28 28 H 1.07998 * 119.87415 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.85617 * 180.27025 * 15 14 13 30 30 H 0.97009 * 125.62937 * 179.97438 * 22 20 19 31 31 H 1.08998 * 110.11370 * 240.81928 * 23 22 20 32 32 H 1.09005 * 110.10919 * 119.17648 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4227 -3.4229 0.0001 12 7 1.7812 -4.9153 0.0011 13 6 2.6830 -5.9729 -0.0938 14 6 3.9339 -5.8790 0.5015 15 6 4.8264 -6.9281 0.4136 16 6 4.4860 -8.0804 -0.2807 17 35 5.7199 -9.5083 -0.4021 18 6 3.2532 -8.1861 -0.8801 19 6 2.3341 -7.1361 -0.7960 20 6 1.1162 -7.5278 -1.5239 21 8 0.1240 -6.8348 -1.6411 22 7 1.2571 -8.7601 -2.0418 23 6 2.5866 -9.2711 -1.6887 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 0.8300 -5.0934 0.0674 28 1 4.2077 -4.9835 1.0396 29 1 5.7960 -6.8499 0.8827 30 1 0.5897 -9.2340 -2.5624 31 1 3.1627 -9.4725 -2.5918 32 1 2.4930 -10.1790 -1.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:39 Heat of formation + Delta-G solvation = -31.393271 kcal Electronic energy + Delta-G solvation = -20387.244048 eV Core-core repulsion = 16973.181055 eV Total energy + Delta-G solvation = -3414.062994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40254 -39.45264 -37.92899 -36.12283 -34.44228 -33.03764 -31.76371 -30.94165 -29.56258 -28.34192 -26.68062 -24.34084 -23.41992 -22.24777 -20.41789 -19.64396 -17.81998 -16.98390 -16.85659 -16.40364 -16.04636 -15.82008 -15.15687 -15.04237 -14.53679 -14.13688 -13.88808 -13.62248 -13.39560 -13.01558 -12.98717 -12.32554 -12.19994 -11.89633 -11.50388 -11.10045 -10.86407 -10.67525 -10.54821 -10.12754 -10.04317 -9.88581 -9.55435 -9.38231 -9.16879 -8.88236 -8.48757 -8.05953 -6.10836 -4.12284 0.55667 0.91570 1.39133 2.62510 2.92691 3.24243 3.34647 3.37079 3.38467 3.47884 3.70381 3.81489 4.17832 4.43576 4.82677 4.88311 4.97443 5.09387 5.20042 5.27261 5.47677 5.54598 5.94623 5.98364 6.10505 6.36144 6.49960 6.72309 6.90182 7.08554 7.21432 7.72528 7.90781 8.04232 8.20190 8.81154 8.97322 9.52828 11.01230 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003131 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.080062 B = 8941.195029 C =10195.688041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.007 3.993 10 C 0.517 3.483 11 O -0.518 6.518 12 N -0.680 5.680 13 C 0.262 3.738 14 C -0.132 4.132 15 C -0.037 4.037 16 C -0.107 4.107 17 Br -0.053 7.053 18 C -0.038 4.038 19 C -0.205 4.205 20 C 0.568 3.432 21 O -0.519 6.519 22 N -0.725 5.725 23 C 0.144 3.856 24 H 0.264 0.736 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.420 0.580 28 H 0.162 0.838 29 H 0.144 0.856 30 H 0.426 0.574 31 H 0.101 0.899 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -24.772 -0.940 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.392 6.392 12 N -0.324 5.324 13 C 0.161 3.839 14 C -0.153 4.153 15 C -0.057 4.057 16 C -0.187 4.187 17 Br 0.032 6.968 18 C -0.042 4.042 19 C -0.213 4.213 20 C 0.356 3.644 21 O -0.396 6.396 22 N -0.383 5.383 23 C 0.020 3.980 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.257 0.743 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.267 0.733 31 H 0.118 0.882 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.934 -24.464 -1.018 26.065 hybrid contribution -0.584 0.774 -0.252 1.002 sum 8.350 -23.691 -1.271 25.151 Atomic orbital electron populations 1.69947 1.06070 1.27251 1.50374 1.25007 0.94922 0.99547 0.94958 0.86449 0.79362 0.82125 0.78882 1.20070 1.21290 1.20053 1.21066 0.94175 0.88860 1.51218 0.90584 1.19310 0.93959 0.89680 1.00231 1.22525 0.91608 0.82717 0.72190 1.90529 1.17789 1.84047 1.46841 1.44308 1.10728 1.05144 1.72239 1.17755 0.90863 0.85810 0.89518 1.21480 0.92592 1.00229 1.00985 1.21179 0.99653 0.90138 0.94753 1.20658 0.93835 0.95973 1.08283 1.96684 1.58214 1.43941 1.97956 1.19866 0.92456 0.95700 0.96184 1.20048 0.97759 0.97116 1.06338 1.17968 0.86392 0.81403 0.78618 1.90860 1.33031 1.55444 1.60233 1.45703 1.17706 1.18056 1.56839 1.20459 0.83162 0.95208 0.99214 0.92662 0.92615 0.92736 0.74255 0.82015 0.83803 0.73285 0.88160 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.58 8.92 -34.44 -0.31 -14.88 16 8 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 9 C 0.01 0.18 5.46 -29.03 -0.16 0.02 16 10 C 0.52 11.42 7.66 -10.98 -0.08 11.34 16 11 O -0.52 -12.40 12.87 5.56 0.07 -12.32 16 12 N -0.68 -12.38 5.21 -9.68 -0.05 -12.43 16 13 C 0.26 4.26 6.33 -83.47 -0.53 3.73 16 14 C -0.13 -1.98 8.68 -39.44 -0.34 -2.32 16 15 C -0.04 -0.44 9.78 -39.46 -0.39 -0.82 16 16 C -0.11 -1.18 6.21 -39.66 -0.25 -1.42 16 17 Br -0.05 -0.47 33.52 -68.01 -2.28 -2.75 16 18 C -0.04 -0.43 6.19 -104.24 -0.65 -1.08 16 19 C -0.21 -2.94 6.20 -104.91 -0.65 -3.59 16 20 C 0.57 8.18 8.32 -12.79 -0.11 8.07 16 21 O -0.52 -9.29 17.21 5.28 0.09 -9.20 16 22 N -0.73 -6.98 6.41 -62.50 -0.40 -7.39 16 23 C 0.14 1.15 7.55 -4.99 -0.04 1.11 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.42 7.17 8.08 -40.82 -0.33 6.84 16 28 H 0.16 2.68 6.19 -52.49 -0.32 2.36 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.43 2.98 8.96 -40.82 -0.37 2.62 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -32.78 305.05 -8.47 -41.25 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.62 Total: 5.16 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.59 Total: 1.67 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.29 Total: -45.20 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.16 Total: -21.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.28 Total: -2.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.78 -8.47 -41.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.860 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds