Wall clock time and date at job start Tue Mar 31 2020 20:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47291 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47123 * 119.99807 * 3 2 1 7 7 C 1.37880 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99524 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46692 * 179.97438 * 9 7 2 11 11 O 1.21272 * 119.99915 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99766 * 179.97438 * 10 9 7 13 13 C 1.39316 * 119.99813 * 175.49227 * 12 10 9 14 14 C 1.38851 * 120.17252 * 34.74192 * 13 12 10 15 15 C 1.38017 * 120.25245 * 179.71358 * 14 13 12 16 16 C 1.38774 * 120.29531 * 0.60237 * 15 14 13 17 17 Br 1.89102 * 119.93745 * 179.69316 * 16 15 14 18 18 C 1.37481 * 120.12522 * 359.66643 * 16 15 14 19 19 C 1.39805 * 120.36763 * 0.02562 * 18 16 15 20 20 C 1.47189 * 108.31891 * 179.97438 * 19 18 16 21 21 O 1.21594 * 124.82618 * 180.02562 * 20 19 18 22 22 N 1.34410 * 110.35602 * 359.97438 * 20 19 18 23 23 C 1.46739 * 108.75267 * 0.02562 * 22 20 19 24 24 H 0.96994 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47293 * 59.99683 * 9 7 2 26 26 H 1.09002 * 109.47097 * 299.99201 * 9 7 2 27 27 H 0.97003 * 120.00145 * 355.49654 * 12 10 9 28 28 H 1.07998 * 119.87415 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.85617 * 180.27025 * 15 14 13 30 30 H 0.97009 * 125.62937 * 179.97438 * 22 20 19 31 31 H 1.08998 * 110.11370 * 240.81928 * 23 22 20 32 32 H 1.09005 * 110.10919 * 119.17648 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4227 -3.4229 0.0001 12 7 1.7812 -4.9153 0.0011 13 6 2.6830 -5.9729 -0.0938 14 6 3.9339 -5.8790 0.5015 15 6 4.8264 -6.9281 0.4136 16 6 4.4860 -8.0804 -0.2807 17 35 5.7199 -9.5083 -0.4021 18 6 3.2532 -8.1861 -0.8801 19 6 2.3341 -7.1361 -0.7960 20 6 1.1162 -7.5278 -1.5239 21 8 0.1240 -6.8348 -1.6411 22 7 1.2571 -8.7601 -2.0418 23 6 2.5866 -9.2711 -1.6887 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 0.8300 -5.0934 0.0674 28 1 4.2077 -4.9835 1.0396 29 1 5.7960 -6.8499 0.8827 30 1 0.5897 -9.2340 -2.5624 31 1 3.1627 -9.4725 -2.5918 32 1 2.4930 -10.1790 -1.0928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:39 Heat of formation + Delta-G solvation = -55.387874 kcal Electronic energy + Delta-G solvation = -20388.284533 eV Core-core repulsion = 16973.181055 eV Total energy + Delta-G solvation = -3415.103478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47614 -40.94009 -39.11146 -37.27160 -35.78638 -35.16623 -32.87036 -31.92300 -31.24592 -29.65423 -27.65200 -26.03473 -24.72072 -23.45769 -21.69908 -21.03473 -18.95730 -18.60381 -18.07714 -17.87850 -17.46043 -16.94533 -16.56873 -16.40877 -16.16207 -15.55792 -14.94463 -14.82283 -14.60023 -14.37707 -14.24683 -13.99976 -13.41204 -13.25121 -12.95333 -12.84309 -12.62927 -12.24249 -12.06807 -11.52717 -11.38067 -11.20566 -11.03669 -10.71748 -10.65239 -10.43708 -10.11349 -9.23288 -8.27606 -6.36928 -0.52145 -0.11984 0.49334 1.40545 1.43677 1.50950 1.52121 1.63996 1.99286 2.11264 2.42310 2.51921 2.89674 3.07979 3.24148 3.81170 3.91518 4.02389 4.28642 4.30265 4.42382 4.51371 4.65567 4.88670 4.93456 5.02061 5.14563 5.20321 5.52897 5.62031 5.71308 5.89751 5.93447 6.35577 6.75636 7.07190 7.10834 7.33117 8.84627 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003131 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.080062 B = 8941.195029 C =10195.688041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.009 3.991 10 C 0.525 3.475 11 O -0.543 6.543 12 N -0.671 5.671 13 C 0.226 3.774 14 C -0.148 4.148 15 C -0.026 4.026 16 C -0.102 4.102 17 Br -0.017 7.017 18 C -0.027 4.027 19 C -0.219 4.219 20 C 0.558 3.442 21 O -0.568 6.568 22 N -0.702 5.702 23 C 0.142 3.858 24 H 0.268 0.732 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.422 0.578 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.440 0.560 31 H 0.133 0.867 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -27.404 -1.486 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.030 4.030 10 C 0.316 3.684 11 O -0.419 6.419 12 N -0.315 5.315 13 C 0.128 3.872 14 C -0.169 4.169 15 C -0.046 4.046 16 C -0.183 4.183 17 Br 0.068 6.932 18 C -0.031 4.031 19 C -0.226 4.226 20 C 0.346 3.654 21 O -0.449 6.449 22 N -0.359 5.359 23 C 0.018 3.982 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.260 0.740 28 H 0.157 0.843 29 H 0.187 0.813 30 H 0.284 0.716 31 H 0.151 0.849 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.733 -27.204 -1.581 29.287 hybrid contribution -1.044 1.327 -0.100 1.692 sum 9.688 -25.877 -1.681 27.682 Atomic orbital electron populations 1.70044 1.07384 1.28351 1.50734 1.25855 0.95832 1.03011 0.94250 0.85432 0.78260 0.77870 0.79076 1.19671 1.20087 1.19302 1.21311 0.93894 0.90644 1.51844 0.91825 1.19110 0.94186 0.90539 0.99162 1.21759 0.90509 0.83578 0.72519 1.90504 1.18191 1.84767 1.48442 1.43841 1.11238 1.04578 1.71867 1.17988 0.91197 0.86083 0.91967 1.21340 0.93005 1.00756 1.01806 1.21424 0.99801 0.89381 0.93989 1.20832 0.94304 0.96457 1.06670 1.96739 1.56865 1.41763 1.97795 1.20272 0.91870 0.95576 0.95347 1.20157 0.98854 0.97220 1.06406 1.18158 0.85832 0.82534 0.78921 1.90833 1.34606 1.57132 1.62296 1.45652 1.18733 1.16289 1.55246 1.20870 0.81911 0.94812 1.00558 0.92290 0.94200 0.93376 0.73995 0.84250 0.81323 0.71554 0.84925 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -31.72 8.92 25.60 0.23 -31.49 16 8 H 0.06 3.84 6.75 -2.91 -0.02 3.82 16 9 C 0.01 0.50 5.46 29.10 0.16 0.66 16 10 C 0.52 24.63 7.66 87.66 0.67 25.30 16 11 O -0.54 -27.35 12.87 -3.01 -0.04 -27.39 16 12 N -0.67 -26.01 5.21 -302.92 -1.58 -27.59 16 13 C 0.23 7.61 6.33 38.59 0.24 7.85 16 14 C -0.15 -4.53 8.68 22.36 0.19 -4.34 16 15 C -0.03 -0.57 9.78 22.35 0.22 -0.35 16 16 C -0.10 -1.94 6.21 22.22 0.14 -1.81 16 17 Br -0.02 -0.23 33.52 -20.37 -0.68 -0.91 16 18 C -0.03 -0.53 6.19 -19.62 -0.12 -0.65 16 19 C -0.22 -6.17 6.20 -20.05 -0.12 -6.30 16 20 C 0.56 15.74 8.32 86.65 0.72 16.46 16 21 O -0.57 -20.94 17.21 -4.01 -0.07 -21.01 16 22 N -0.70 -11.60 6.41 -470.12 -3.01 -14.61 16 23 C 0.14 1.62 7.55 85.63 0.65 2.27 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 25 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.42 15.58 8.08 -92.71 -0.75 14.83 16 28 H 0.14 4.90 6.19 -2.91 -0.02 4.88 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.44 4.88 8.96 -92.70 -0.83 4.05 16 31 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.14 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -74.23 305.05 0.00 -74.23 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.37 Total: 16.20 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 3.44 Total: 8.61 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -4.31 Total: -97.02 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.11 Total: -48.40 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.68 Total: -0.91 kcal Total: -74.23 0.00 -74.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.846 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds