Wall clock time and date at job start Tue Mar 31 2020 21:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46976 * 299.99701 * 3 2 1 6 6 H 1.48499 * 109.47229 * 60.00055 * 3 2 1 7 7 C 1.37879 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00129 * 269.99625 * 10 9 7 12 12 C 1.50709 * 109.47273 * 270.00327 * 11 10 9 13 13 C 1.38670 * 120.41651 * 269.72196 * 12 11 10 14 14 C 1.38628 * 118.41839 * 179.78393 * 13 12 11 15 15 C 1.38224 * 119.16052 * 0.50759 * 14 13 12 16 16 N 1.31859 * 120.76529 * 359.73075 * 15 14 13 17 17 C 1.31887 * 121.71915 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00345 * 90.00118 * 10 9 7 19 19 O 1.21613 * 120.00251 * 179.97438 * 18 10 9 20 20 C 1.47111 * 119.99716 * 359.97438 * 18 10 9 21 21 C 1.32991 * 119.99614 * 180.02562 * 20 18 10 22 22 C 1.50701 * 119.99575 * 179.72107 * 21 20 18 23 23 Br 1.96602 * 109.46798 * 125.27828 * 22 21 20 24 24 H 0.96997 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47562 * 59.99525 * 9 7 2 26 26 H 1.09002 * 109.47106 * 299.99843 * 9 7 2 27 27 H 1.09000 * 109.46889 * 29.99981 * 11 10 9 28 28 H 1.08993 * 109.47336 * 150.00348 * 11 10 9 29 29 H 1.08002 * 120.78904 * 0.02562 * 13 12 11 30 30 H 1.07997 * 120.42135 * 180.21849 * 14 13 12 31 31 H 1.08006 * 119.61997 * 179.74989 * 15 14 13 32 32 H 1.07999 * 119.61106 * 180.02562 * 17 16 15 33 33 H 1.07992 * 119.99779 * 0.02562 * 20 18 10 34 34 H 1.08002 * 120.00602 * 0.02562 * 21 20 18 35 35 H 1.08998 * 109.47474 * 245.27670 * 22 21 20 36 36 H 1.09001 * 109.47291 * 5.27957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6790 -4.1694 -1.2681 12 6 1.7622 -5.2837 -1.7032 13 6 2.0114 -6.5907 -1.3126 14 6 1.1387 -7.5826 -1.7328 15 6 0.0629 -7.2397 -2.5301 16 7 -0.1403 -5.9865 -2.8863 17 6 0.6658 -5.0165 -2.5005 18 6 2.6410 -4.1249 1.1677 19 8 3.4309 -5.0495 1.1677 20 6 2.1634 -3.5655 2.4417 21 6 2.5960 -4.0706 3.5934 22 6 2.1116 -3.4935 4.8985 23 35 1.3474 -4.9272 6.0056 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.6867 -3.3878 -2.0278 28 1 3.6884 -4.5594 -1.1379 29 1 2.8628 -6.8297 -0.6926 30 1 1.3000 -8.6108 -1.4446 31 1 -0.6193 -8.0071 -2.8650 32 1 0.4670 -4.0017 -2.8120 33 1 1.4616 -2.7447 2.4417 34 1 3.2981 -4.8912 3.5934 35 1 2.9479 -3.0342 5.4254 36 1 1.3485 -2.7404 4.7018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144465718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:51 Heat of formation + Delta-G solvation = 12.640143 kcal Electronic energy + Delta-G solvation = -20720.720833 eV Core-core repulsion = 17444.400366 eV Total energy + Delta-G solvation = -3276.320467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09014 -39.01727 -35.46085 -34.47439 -33.08245 -32.16288 -31.38924 -30.41015 -27.69904 -27.05554 -25.45557 -23.45978 -22.90955 -22.19659 -20.34770 -18.28460 -16.99000 -16.88481 -16.45743 -15.85021 -15.78160 -15.14610 -14.61840 -14.16810 -13.99517 -13.58160 -13.43800 -13.23552 -12.96438 -12.73438 -12.45567 -12.31990 -11.87178 -11.82541 -11.43452 -11.19234 -11.03014 -10.76004 -10.27298 -9.99620 -9.89660 -9.87806 -9.62425 -9.32642 -9.24664 -9.11972 -8.78394 -8.63237 -7.88197 -6.27013 -4.35379 1.24009 1.29460 1.51580 2.14716 3.15894 3.25498 3.28817 3.70991 3.84987 4.17258 4.26185 4.66187 4.75375 4.93225 5.02104 5.06244 5.14766 5.23206 5.28606 5.30163 5.51647 5.68680 5.72004 5.87818 6.03695 6.12869 6.34341 6.50832 6.54336 6.57485 6.72270 6.92565 7.08194 7.38241 7.67239 7.94314 8.15356 8.18247 8.68417 8.84857 9.33218 10.79494 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004798 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.680187 B = 5834.259113 C = 8933.417405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.582 5.582 11 C 0.161 3.839 12 C -0.146 4.146 13 C -0.056 4.056 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.546 3.454 19 O -0.573 6.573 20 C -0.155 4.155 21 C -0.112 4.112 22 C -0.045 4.045 23 Br -0.162 7.162 24 H 0.266 0.734 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -9.717 5.901 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.311 5.311 11 C 0.037 3.963 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.042 4.042 18 C 0.337 3.663 19 O -0.456 6.456 20 C -0.178 4.178 21 C -0.132 4.132 22 C -0.159 4.159 23 Br -0.081 7.081 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.131 0.869 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.536 -10.302 5.735 11.890 hybrid contribution 1.136 1.222 0.318 1.698 sum 2.672 -9.080 6.053 11.235 Atomic orbital electron populations 1.69931 1.05988 1.27370 1.49365 1.24942 0.94838 0.99308 0.94640 0.86466 0.80134 0.83212 0.77842 1.19643 1.20775 1.20813 1.21515 0.93684 0.90278 1.52382 0.91902 1.19538 0.87499 0.82438 0.98942 1.48149 1.45103 1.34108 1.03708 1.20150 0.95923 0.93382 0.86888 1.21416 0.98695 0.95949 0.98865 1.21666 0.98628 0.92179 0.95733 1.22106 0.96943 1.00442 1.00622 1.22703 0.95752 0.93557 0.94713 1.67711 1.28928 1.00813 1.22331 1.22807 0.89590 0.98578 0.93243 1.18413 0.80840 0.82307 0.84784 1.90663 1.36353 1.30479 1.88089 1.23057 1.01492 1.01101 0.92112 1.23290 0.98751 0.99421 0.91767 1.23777 1.03360 0.94418 0.94364 1.97383 1.86272 1.54050 1.70437 0.92439 0.94362 0.94218 0.88906 0.89707 0.84455 0.85246 0.83276 0.82495 0.84002 0.85054 0.86863 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 13.29 55.43 0.74 -22.67 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.66 29.54 -169.99 -5.02 14.63 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.17 9.39 -34.44 -0.32 -13.49 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.23 4.88 -5.20 -0.03 5.21 16 10 N -0.58 -11.48 2.44 -177.84 -0.43 -11.91 16 11 C 0.16 2.77 5.56 -5.19 -0.03 2.74 16 12 C -0.15 -2.38 5.48 -104.48 -0.57 -2.95 16 13 C -0.06 -0.84 9.86 -39.28 -0.39 -1.23 16 14 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 15 C 0.09 1.23 11.18 -17.54 -0.20 1.04 16 16 N -0.49 -7.98 10.36 -13.25 -0.14 -8.12 16 17 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 18 C 0.55 10.76 7.62 -12.66 -0.10 10.67 16 19 O -0.57 -11.85 15.45 5.27 0.08 -11.77 16 20 C -0.16 -2.72 8.82 -37.80 -0.33 -3.05 16 21 C -0.11 -1.64 9.15 -36.13 -0.33 -1.97 16 22 C -0.04 -0.53 7.05 36.01 0.25 -0.27 16 23 Br -0.16 -2.00 33.92 -68.01 -2.31 -4.30 16 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16 27 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 28 H 0.08 1.44 7.37 -51.93 -0.38 1.05 16 29 H 0.14 2.09 7.71 -52.49 -0.40 1.68 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.14 2.58 6.04 -52.49 -0.32 2.26 16 34 H 0.13 2.00 7.49 -52.49 -0.39 1.60 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.11 1.26 7.82 -51.93 -0.41 0.86 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -28.02 338.79 -8.99 -37.01 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.29 Total: 4.86 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.73 Total: -2.84 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.17 Total: -42.70 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 35 Polarization: -2.00 SS G_CDS: -2.31 Total: -4.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.02 -8.99 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144465718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.651 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds