Wall clock time and date at job start Tue Mar 31 2020 21:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46976 * 299.99701 * 3 2 1 6 6 H 1.48499 * 109.47229 * 60.00055 * 3 2 1 7 7 C 1.37879 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00072 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00129 * 269.99625 * 10 9 7 12 12 C 1.50709 * 109.47273 * 270.00327 * 11 10 9 13 13 C 1.38670 * 120.41651 * 269.72196 * 12 11 10 14 14 C 1.38628 * 118.41839 * 179.78393 * 13 12 11 15 15 C 1.38224 * 119.16052 * 0.50759 * 14 13 12 16 16 N 1.31859 * 120.76529 * 359.73075 * 15 14 13 17 17 C 1.31887 * 121.71915 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00345 * 90.00118 * 10 9 7 19 19 O 1.21613 * 120.00251 * 179.97438 * 18 10 9 20 20 C 1.47111 * 119.99716 * 359.97438 * 18 10 9 21 21 C 1.32991 * 119.99614 * 180.02562 * 20 18 10 22 22 C 1.50701 * 119.99575 * 179.72107 * 21 20 18 23 23 Br 1.96602 * 109.46798 * 125.27828 * 22 21 20 24 24 H 0.96997 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47562 * 59.99525 * 9 7 2 26 26 H 1.09002 * 109.47106 * 299.99843 * 9 7 2 27 27 H 1.09000 * 109.46889 * 29.99981 * 11 10 9 28 28 H 1.08993 * 109.47336 * 150.00348 * 11 10 9 29 29 H 1.08002 * 120.78904 * 0.02562 * 13 12 11 30 30 H 1.07997 * 120.42135 * 180.21849 * 14 13 12 31 31 H 1.08006 * 119.61997 * 179.74989 * 15 14 13 32 32 H 1.07999 * 119.61106 * 180.02562 * 17 16 15 33 33 H 1.07992 * 119.99779 * 0.02562 * 20 18 10 34 34 H 1.08002 * 120.00602 * 0.02562 * 21 20 18 35 35 H 1.08998 * 109.47474 * 245.27670 * 22 21 20 36 36 H 1.09001 * 109.47291 * 5.27957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6790 -4.1694 -1.2681 12 6 1.7622 -5.2837 -1.7032 13 6 2.0114 -6.5907 -1.3126 14 6 1.1387 -7.5826 -1.7328 15 6 0.0629 -7.2397 -2.5301 16 7 -0.1403 -5.9865 -2.8863 17 6 0.6658 -5.0165 -2.5005 18 6 2.6410 -4.1249 1.1677 19 8 3.4309 -5.0495 1.1677 20 6 2.1634 -3.5655 2.4417 21 6 2.5960 -4.0706 3.5934 22 6 2.1116 -3.4935 4.8985 23 35 1.3474 -4.9272 6.0056 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.6867 -3.3878 -2.0278 28 1 3.6884 -4.5594 -1.1379 29 1 2.8628 -6.8297 -0.6926 30 1 1.3000 -8.6108 -1.4446 31 1 -0.6193 -8.0071 -2.8650 32 1 0.4670 -4.0017 -2.8120 33 1 1.4616 -2.7447 2.4417 34 1 3.2981 -4.8912 3.5934 35 1 2.9479 -3.0342 5.4254 36 1 1.3485 -2.7404 4.7018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144465718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:51 Heat of formation + Delta-G solvation = -1.372059 kcal Electronic energy + Delta-G solvation = -20721.328448 eV Core-core repulsion = 17444.400366 eV Total energy + Delta-G solvation = -3276.928082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37909 -40.43776 -36.99862 -35.76800 -34.77414 -33.57189 -32.61525 -31.51561 -29.37771 -28.39160 -26.73464 -25.02346 -24.34576 -23.41773 -21.64071 -19.74509 -18.65529 -18.32210 -17.88437 -17.28296 -17.08107 -16.52184 -16.33916 -15.50179 -15.23173 -14.77215 -14.65673 -14.51944 -14.25953 -14.21307 -13.90798 -13.60886 -13.50620 -13.19745 -12.86346 -12.75004 -12.63639 -12.41430 -12.02124 -11.69600 -11.09779 -10.98289 -10.84383 -10.71765 -10.54994 -10.46639 -10.38253 -9.97572 -9.49081 -8.19418 -6.34072 0.04012 0.12507 0.32942 0.99998 1.41757 1.46231 1.55773 2.24855 2.39677 2.46106 2.94684 3.11547 3.46652 3.54137 3.86500 3.88299 3.92543 4.08265 4.09784 4.21852 4.27945 4.49084 4.54221 4.67791 4.73221 4.84023 4.87993 5.16660 5.19355 5.25735 5.36292 5.40297 5.66234 5.77371 5.80536 6.05153 6.51720 6.80623 7.00708 7.25665 7.39743 8.86260 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004798 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.680187 B = 5834.259113 C = 8933.417405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.253 3.747 10 N -0.586 5.586 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.101 3.899 18 C 0.541 3.459 19 O -0.588 6.588 20 C -0.190 4.190 21 C -0.074 4.074 22 C -0.044 4.044 23 Br -0.160 7.160 24 H 0.268 0.732 25 H 0.022 0.978 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -10.608 6.781 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.132 3.868 10 N -0.314 5.314 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.189 4.189 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.056 4.056 18 C 0.333 3.667 19 O -0.472 6.472 20 C -0.212 4.212 21 C -0.095 4.095 22 C -0.158 4.158 23 Br -0.079 7.079 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.153 0.847 30 H 0.184 0.816 31 H 0.203 0.797 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.955 -11.198 6.611 13.151 hybrid contribution 1.016 1.364 0.096 1.703 sum 2.971 -9.834 6.707 12.269 Atomic orbital electron populations 1.70021 1.07204 1.28121 1.50429 1.25605 0.95466 1.02149 0.94388 0.85549 0.78908 0.79663 0.77803 1.19496 1.20688 1.20306 1.21668 0.93329 0.91313 1.51795 0.92702 1.19138 0.87439 0.82681 0.97503 1.48109 1.44822 1.33704 1.04814 1.20190 0.96242 0.93816 0.85968 1.21270 0.98745 0.96214 0.99692 1.21772 0.99198 0.92197 0.95948 1.22469 0.95630 1.01647 0.99136 1.23346 0.96272 0.93259 0.93893 1.67720 1.29237 1.01908 1.23122 1.22726 0.90125 0.98692 0.94040 1.18764 0.80521 0.82093 0.85343 1.90637 1.37103 1.31124 1.88344 1.22863 1.03647 1.02598 0.92120 1.23478 0.96254 0.97576 0.92202 1.23871 1.04629 0.94302 0.93047 1.97400 1.86313 1.54158 1.70043 0.92336 0.95969 0.95315 0.89049 0.89572 0.84653 0.81630 0.79694 0.83301 0.85043 0.85146 0.83961 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.01 13.29 21.45 0.28 -48.72 16 2 C 0.02 1.24 5.46 84.65 0.46 1.70 16 3 Si 0.95 40.31 29.54 68.60 2.03 42.34 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -26.93 9.39 25.60 0.24 -26.69 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.25 11.64 4.88 85.63 0.42 12.06 16 10 N -0.59 -23.77 2.44 -834.80 -2.04 -25.80 16 11 C 0.16 5.73 5.56 85.64 0.48 6.21 16 12 C -0.16 -5.16 5.48 -19.77 -0.11 -5.27 16 13 C -0.06 -1.91 9.86 22.47 0.22 -1.69 16 14 C -0.17 -4.06 10.11 22.36 0.23 -3.84 16 15 C 0.09 2.26 11.18 84.69 0.95 3.20 16 16 N -0.51 -16.40 10.36 -195.84 -2.03 -18.43 16 17 C 0.10 3.40 10.86 84.67 0.92 4.32 16 18 C 0.54 21.60 7.62 86.57 0.66 22.26 16 19 O -0.59 -24.33 15.45 -4.07 -0.06 -24.40 16 20 C -0.19 -6.66 8.82 23.43 0.21 -6.45 16 21 C -0.07 -2.10 9.15 24.52 0.22 -1.88 16 22 C -0.04 -0.95 7.05 71.24 0.50 -0.45 16 23 Br -0.16 -3.63 33.92 -20.37 -0.69 -4.32 16 24 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 25 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 26 H 0.03 1.39 6.10 -2.39 -0.01 1.37 16 27 H 0.09 3.18 8.02 -2.39 -0.02 3.17 16 28 H 0.09 2.99 7.37 -2.39 -0.02 2.98 16 29 H 0.14 4.03 7.71 -2.91 -0.02 4.01 16 30 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.13 4.89 6.04 -2.91 -0.02 4.87 16 34 H 0.13 3.77 7.49 -2.91 -0.02 3.75 16 35 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.12 2.45 7.82 -2.39 -0.02 2.44 16 Total: -1.00 -59.72 338.79 3.97 -55.75 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.09 Total: 20.10 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.40 Total: 3.49 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -3.78 Total: -92.96 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 35 Polarization: -3.63 SS G_CDS: -0.69 Total: -4.32 kcal Total: -59.72 3.97 -55.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144465718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.379 kcal (2) G-P(sol) polarization free energy of solvation -59.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds