Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46991 * 181.13162 * 3 2 1 5 5 N 1.46500 * 109.47365 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99751 * 271.76151 * 5 4 3 7 7 C 1.50700 * 109.46938 * 265.21234 * 6 5 4 8 8 H 1.08006 * 120.00032 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99951 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46965 * 60.00021 * 11 9 7 13 13 H 1.48498 * 109.47205 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46758 * 299.99847 * 11 9 7 15 15 C 1.34774 * 119.99598 * 91.75887 * 5 4 3 16 16 O 1.21515 * 120.00621 * 354.64133 * 15 5 4 17 17 C 1.48145 * 119.99590 * 174.91501 * 15 5 4 18 18 C 1.39414 * 120.09304 * 173.45709 * 17 15 5 19 19 N 1.32089 * 119.90299 * 180.02562 * 18 17 15 20 20 C 1.32108 * 120.08561 * 0.02562 * 19 18 17 21 21 C 1.38864 * 120.18237 * 359.97438 * 20 19 18 22 22 Br 1.89098 * 119.95163 * 180.02562 * 21 20 19 23 23 N 1.31870 * 120.09678 * 359.72006 * 21 20 19 24 24 H 1.09004 * 109.47129 * 61.13943 * 3 2 1 25 25 H 1.08995 * 109.47499 * 301.13421 * 3 2 1 26 26 H 1.09004 * 109.46546 * 60.00424 * 4 3 2 27 27 H 1.08999 * 109.46992 * 300.00898 * 4 3 2 28 28 H 1.08998 * 109.47179 * 25.20961 * 6 5 4 29 29 H 1.08997 * 109.46638 * 145.21207 * 6 5 4 30 30 H 0.97000 * 119.99879 * 180.02562 * 10 9 7 31 31 H 1.07998 * 120.04163 * 359.97438 * 18 17 15 32 32 H 1.08003 * 119.91007 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4432 0.0285 5 7 4.5823 1.4439 0.0279 6 6 5.3153 1.3801 1.2947 7 6 5.6686 2.7753 1.7415 8 1 5.3767 3.6246 1.1415 9 6 6.3654 2.9675 2.9156 10 7 6.7221 1.9333 3.6453 11 14 6.8039 4.6969 3.4690 12 1 5.5606 5.4869 3.6563 13 1 7.5479 4.6322 4.7526 14 1 7.6525 5.3463 2.4378 15 6 5.2556 1.5033 -1.1381 16 8 4.6516 1.4580 -2.1916 17 6 6.7326 1.6178 -1.1355 18 6 7.4417 1.5423 -2.3335 19 7 8.7586 1.6443 -2.3268 20 6 9.4036 1.8171 -1.1869 21 6 8.7009 1.8928 0.0084 22 35 9.6307 2.1411 1.6362 23 7 7.3856 1.7979 0.0094 24 1 2.9715 -0.4952 -0.9001 25 1 2.9716 -0.5305 0.8796 26 1 2.7537 1.9391 0.9285 27 1 2.7536 1.9743 -0.8511 28 1 4.6923 0.9031 2.0513 29 1 6.2281 0.8004 1.1574 30 1 7.2120 2.0685 4.4715 31 1 6.9150 1.3997 -3.2655 32 1 10.4805 1.8998 -1.1846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147870933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = 66.828486 kcal Electronic energy + Delta-G solvation = -21049.971043 eV Core-core repulsion = 17672.460015 eV Total energy + Delta-G solvation = -3377.511028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01849 -39.06173 -36.72396 -35.49540 -34.18704 -32.79433 -32.33632 -30.96302 -29.58858 -27.22190 -25.69548 -24.18926 -23.31643 -22.83217 -19.49563 -17.79355 -17.42762 -16.88283 -16.62416 -16.35561 -15.57121 -14.99641 -14.83037 -14.58838 -14.16793 -14.11595 -13.48953 -13.15658 -12.64587 -12.46675 -12.34465 -12.22229 -12.07303 -11.69659 -11.47292 -11.01926 -10.99874 -10.78397 -10.49951 -10.30472 -10.18895 -9.91506 -9.88434 -9.72091 -8.87594 -8.54449 -8.35591 -7.99265 -6.08535 -4.05088 0.53872 1.21011 1.69232 2.78960 2.91129 3.02654 3.26466 3.30650 3.35283 3.43063 3.97658 4.19744 4.28820 4.37527 4.52675 4.54776 5.11981 5.25011 5.27773 5.28905 5.33328 5.36273 5.60996 5.95335 6.15892 6.25265 6.53334 7.19816 7.33479 7.40124 7.66683 7.78779 7.80688 8.03580 8.14909 8.55668 8.89203 9.53077 10.99180 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.005760 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.710481 B = 4859.708790 C = 6414.144024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.124 3.876 5 N -0.572 5.572 6 C 0.238 3.762 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.086 3.914 10 N -0.871 5.871 11 Si 0.869 3.131 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.573 3.427 16 O -0.558 6.558 17 C 0.034 3.966 18 C 0.106 3.894 19 N -0.445 5.445 20 C 0.092 3.908 21 C 0.059 3.941 22 Br 0.018 6.982 23 N -0.303 5.303 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.262 0.738 31 H 0.181 0.819 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -2.547 -4.997 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.001 4.001 5 N -0.300 5.300 6 C 0.119 3.881 7 C -0.543 4.543 8 H 0.069 0.931 9 C -0.118 4.118 10 N -0.509 5.509 11 Si 0.697 3.303 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.359 3.641 16 O -0.438 6.438 17 C -0.109 4.109 18 C -0.055 4.055 19 N -0.160 5.160 20 C -0.071 4.071 21 C -0.162 4.162 22 Br 0.101 6.899 23 N -0.022 5.022 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.198 0.802 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.534 -2.539 -4.743 7.718 hybrid contribution 0.668 1.099 0.306 1.322 sum 6.201 -1.440 -4.437 7.760 Atomic orbital electron populations 1.81183 1.13067 1.08749 1.09627 1.29072 0.95084 0.92989 0.92562 1.19761 0.81389 1.01312 1.06182 1.21238 0.80908 0.93542 1.04405 1.48251 1.05459 1.67765 1.08571 1.19936 0.92031 0.98561 0.77546 1.21063 1.35670 0.91592 1.05926 0.93117 1.24565 0.95225 0.95775 0.96268 1.69847 1.37955 1.28968 1.14150 0.86994 0.78815 0.86164 0.78305 1.20558 1.21122 1.20024 1.17602 0.85003 0.77409 0.84053 1.90727 1.68540 1.53229 1.31335 1.22322 0.96468 1.01787 0.90289 1.23822 0.90084 0.92249 0.99296 1.68666 1.08899 1.10802 1.27586 1.23924 1.01728 0.93973 0.87445 1.24214 0.93882 1.03929 0.94139 1.96820 1.69675 1.95340 1.28017 1.69615 1.05703 1.01072 1.25764 0.87184 0.86843 0.88900 0.89777 0.94866 0.91851 0.92825 0.80174 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.20 18.54 42.15 0.78 -6.42 16 2 C 0.22 3.00 15.43 -20.76 -0.32 2.68 16 3 C -0.05 -0.54 6.03 -29.51 -0.18 -0.72 16 4 C 0.12 1.83 5.32 -4.04 -0.02 1.81 16 5 N -0.57 -10.18 2.47 -176.06 -0.43 -10.62 16 6 C 0.24 4.92 4.75 -5.19 -0.02 4.90 16 7 C -0.50 -11.74 7.48 -34.44 -0.26 -12.00 16 8 H 0.05 1.26 7.81 -52.48 -0.41 0.85 16 9 C 0.09 2.06 5.46 -17.82 -0.10 1.97 16 10 N -0.87 -21.36 13.29 55.43 0.74 -20.62 16 11 Si 0.87 19.71 29.54 -169.99 -5.02 14.69 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.57 10.40 7.61 -12.19 -0.09 10.31 16 16 O -0.56 -10.38 15.97 5.35 0.09 -10.29 16 17 C 0.03 0.61 6.55 -82.84 -0.54 0.06 16 18 C 0.11 1.63 10.77 -17.00 -0.18 1.44 16 19 N -0.45 -6.62 10.49 -12.69 -0.13 -6.76 16 20 C 0.09 1.32 10.97 -17.20 -0.19 1.13 16 21 C 0.06 1.02 7.18 -17.30 -0.12 0.89 16 22 Br 0.02 0.30 33.89 -68.01 -2.30 -2.00 16 23 N -0.30 -5.82 4.98 -8.02 -0.04 -5.86 16 24 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 27 H 0.08 1.25 7.45 -51.93 -0.39 0.86 16 28 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 29 H 0.06 1.41 5.72 -51.93 -0.30 1.11 16 30 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.18 2.40 7.66 -52.49 -0.40 2.00 16 32 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -27.14 315.43 -6.34 -33.48 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -2.74 Total: -2.83 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -2.03 Total: 12.47 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.91 Total: -50.28 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.30 Total: -2.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.14 -6.34 -33.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147870933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.313 kcal (2) G-P(sol) polarization free energy of solvation -27.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds