Wall clock time and date at job start Tue Mar 31 2020 20:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46991 * 181.13162 * 3 2 1 5 5 N 1.46500 * 109.47365 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99751 * 271.76151 * 5 4 3 7 7 C 1.50700 * 109.46938 * 265.21234 * 6 5 4 8 8 H 1.08006 * 120.00032 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31507 * 119.99867 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99951 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46965 * 60.00021 * 11 9 7 13 13 H 1.48498 * 109.47205 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46758 * 299.99847 * 11 9 7 15 15 C 1.34774 * 119.99598 * 91.75887 * 5 4 3 16 16 O 1.21515 * 120.00621 * 354.64133 * 15 5 4 17 17 C 1.48145 * 119.99590 * 174.91501 * 15 5 4 18 18 C 1.39414 * 120.09304 * 173.45709 * 17 15 5 19 19 N 1.32089 * 119.90299 * 180.02562 * 18 17 15 20 20 C 1.32108 * 120.08561 * 0.02562 * 19 18 17 21 21 C 1.38864 * 120.18237 * 359.97438 * 20 19 18 22 22 Br 1.89098 * 119.95163 * 180.02562 * 21 20 19 23 23 N 1.31870 * 120.09678 * 359.72006 * 21 20 19 24 24 H 1.09004 * 109.47129 * 61.13943 * 3 2 1 25 25 H 1.08995 * 109.47499 * 301.13421 * 3 2 1 26 26 H 1.09004 * 109.46546 * 60.00424 * 4 3 2 27 27 H 1.08999 * 109.46992 * 300.00898 * 4 3 2 28 28 H 1.08998 * 109.47179 * 25.20961 * 6 5 4 29 29 H 1.08997 * 109.46638 * 145.21207 * 6 5 4 30 30 H 0.97000 * 119.99879 * 180.02562 * 10 9 7 31 31 H 1.07998 * 120.04163 * 359.97438 * 18 17 15 32 32 H 1.08003 * 119.91007 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4432 0.0285 5 7 4.5823 1.4439 0.0279 6 6 5.3153 1.3801 1.2947 7 6 5.6686 2.7753 1.7415 8 1 5.3767 3.6246 1.1415 9 6 6.3654 2.9675 2.9156 10 7 6.7221 1.9333 3.6453 11 14 6.8039 4.6969 3.4690 12 1 5.5606 5.4869 3.6563 13 1 7.5479 4.6322 4.7526 14 1 7.6525 5.3463 2.4378 15 6 5.2556 1.5033 -1.1381 16 8 4.6516 1.4580 -2.1916 17 6 6.7326 1.6178 -1.1355 18 6 7.4417 1.5423 -2.3335 19 7 8.7586 1.6443 -2.3268 20 6 9.4036 1.8171 -1.1869 21 6 8.7009 1.8928 0.0084 22 35 9.6307 2.1411 1.6362 23 7 7.3856 1.7979 0.0094 24 1 2.9715 -0.4952 -0.9001 25 1 2.9716 -0.5305 0.8796 26 1 2.7537 1.9391 0.9285 27 1 2.7536 1.9743 -0.8511 28 1 4.6923 0.9031 2.0513 29 1 6.2281 0.8004 1.1574 30 1 7.2120 2.0685 4.4715 31 1 6.9150 1.3997 -3.2655 32 1 10.4805 1.8998 -1.1846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147870933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:42 Heat of formation + Delta-G solvation = 51.785391 kcal Electronic energy + Delta-G solvation = -21050.623361 eV Core-core repulsion = 17672.460015 eV Total energy + Delta-G solvation = -3378.163345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31797 -40.42598 -37.92669 -36.91211 -35.46438 -34.46510 -33.67505 -32.25106 -30.86878 -28.88599 -26.95433 -25.47680 -24.83536 -24.24722 -20.86814 -19.10152 -18.65914 -18.29171 -18.02210 -17.79002 -16.93174 -16.40728 -16.30609 -15.94495 -15.50666 -15.41965 -14.77842 -14.42711 -14.13670 -13.86700 -13.75109 -13.56381 -13.41571 -12.96152 -12.89102 -12.70129 -12.59794 -12.08679 -12.00130 -11.74393 -11.62163 -11.55726 -11.29682 -11.22625 -10.23821 -10.14729 -9.82236 -9.48240 -7.92511 -5.91477 -0.71212 -0.06948 0.40487 1.43073 1.47838 1.50588 1.60215 1.72340 1.81138 2.13352 2.55646 2.68310 3.01819 3.11142 3.24912 3.30735 3.46224 3.84202 4.04236 4.14092 4.16967 4.27273 4.56793 4.85967 4.99835 5.03856 5.10781 5.57683 5.82719 5.94183 6.04834 6.37530 6.45273 6.56892 6.57540 7.03328 7.18625 7.69117 9.14055 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.005760 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.710481 B = 4859.708790 C = 6414.144024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.121 3.879 5 N -0.574 5.574 6 C 0.256 3.744 7 C -0.502 4.502 8 H 0.032 0.968 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.893 3.107 12 H -0.286 1.286 13 H -0.285 1.285 14 H -0.278 1.278 15 C 0.573 3.427 16 O -0.564 6.564 17 C 0.013 3.987 18 C 0.120 3.880 19 N -0.442 5.442 20 C 0.113 3.887 21 C 0.043 3.957 22 Br 0.012 6.988 23 N -0.333 5.333 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.259 0.741 31 H 0.202 0.798 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -2.957 -6.143 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.003 4.003 5 N -0.302 5.302 6 C 0.136 3.864 7 C -0.542 4.542 8 H 0.050 0.950 9 C -0.135 4.135 10 N -0.525 5.525 11 Si 0.721 3.279 12 H -0.212 1.212 13 H -0.210 1.210 14 H -0.204 1.204 15 C 0.359 3.641 16 O -0.445 6.445 17 C -0.129 4.129 18 C -0.040 4.040 19 N -0.156 5.156 20 C -0.049 4.049 21 C -0.179 4.179 22 Br 0.095 6.905 23 N -0.052 5.052 24 H 0.142 0.858 25 H 0.148 0.852 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.219 0.781 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.365 -2.943 -5.894 9.160 hybrid contribution 0.480 1.248 0.554 1.447 sum 6.845 -1.696 -5.340 8.846 Atomic orbital electron populations 1.81213 1.14348 1.10053 1.11213 1.29193 0.95049 0.91705 0.91176 1.19693 0.80087 0.99661 1.07659 1.21327 0.79310 0.95349 1.04306 1.48146 1.06490 1.67943 1.07657 1.19522 0.91746 0.96745 0.78383 1.21084 1.35311 0.92237 1.05545 0.94990 1.24770 0.95528 0.96626 0.96559 1.69881 1.38936 1.29341 1.14350 0.86637 0.78257 0.84996 0.77975 1.21185 1.21047 1.20370 1.17709 0.85366 0.77063 0.83913 1.90716 1.68830 1.53673 1.31296 1.22379 0.96371 1.03389 0.90805 1.24115 0.90265 0.90424 0.99193 1.68819 1.08581 1.10751 1.27460 1.24460 1.03229 0.91173 0.86079 1.24425 0.93567 1.04950 0.94933 1.96806 1.69390 1.95441 1.28873 1.69391 1.07052 1.01695 1.27037 0.85756 0.85232 0.89140 0.89837 0.95507 0.92885 0.93151 0.78130 0.77149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.30 18.54 20.01 0.37 -14.93 16 2 C 0.25 6.33 15.43 89.44 1.38 7.71 16 3 C -0.03 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.12 3.43 5.32 86.38 0.46 3.89 16 5 N -0.57 -19.88 2.47 -829.22 -2.05 -21.93 16 6 C 0.26 10.46 4.75 85.63 0.41 10.87 16 7 C -0.50 -23.38 7.48 25.60 0.19 -23.19 16 8 H 0.03 1.59 7.81 -2.91 -0.02 1.56 16 9 C 0.07 3.22 5.46 84.66 0.46 3.69 16 10 N -0.89 -43.22 13.29 21.45 0.28 -42.94 16 11 Si 0.89 39.95 29.54 68.60 2.03 41.97 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.57 20.04 7.61 86.88 0.66 20.70 16 16 O -0.56 -19.98 15.97 -3.76 -0.06 -20.04 16 17 C 0.01 0.45 6.55 41.88 0.27 0.72 16 18 C 0.12 3.39 10.77 84.94 0.91 4.30 16 19 N -0.44 -11.82 10.49 -194.05 -2.04 -13.86 16 20 C 0.11 2.92 10.97 84.80 0.93 3.85 16 21 C 0.04 1.40 7.18 84.84 0.61 2.01 16 22 Br 0.01 0.38 33.89 -20.37 -0.69 -0.31 16 23 N -0.33 -12.47 4.98 -179.30 -0.89 -13.37 16 24 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.09 2.59 8.09 -2.38 -0.02 2.57 16 27 H 0.08 2.38 7.45 -2.39 -0.02 2.36 16 28 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 29 H 0.05 2.34 5.72 -2.39 -0.01 2.33 16 30 H 0.26 12.50 8.31 -92.71 -0.77 11.73 16 31 H 0.20 4.76 7.66 -2.91 -0.02 4.74 16 32 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -56.79 315.43 4.59 -52.20 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 1.17 Total: -0.86 kcal Atomic # 6 Polarization: 27.61 SS G_CDS: 6.46 Total: 34.07 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.32 Total: -107.03 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -0.69 Total: -0.31 kcal Total: -56.79 4.59 -52.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147870933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.983 kcal (2) G-P(sol) polarization free energy of solvation -56.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds