Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21637 * 119.99895 * 0.02562 * 12 11 10 14 14 C 1.47176 * 120.00228 * 180.02562 * 12 11 10 15 15 C 1.44475 * 123.45572 * 359.70793 * 14 12 11 16 16 C 1.32891 * 113.05106 * 179.76635 * 15 14 12 17 17 Cl 1.73595 * 124.72049 * 180.19435 * 16 15 14 18 18 S 1.75502 * 110.55982 * 0.48403 * 16 15 14 19 19 C 1.35973 * 123.45943 * 180.02562 * 14 12 11 20 20 S 1.76192 * 124.57475 * 359.96356 * 19 14 12 21 21 N 1.65605 * 107.21627 * 150.00213 * 20 19 14 22 22 O 1.42103 * 106.40319 * 263.53812 * 20 19 14 23 23 O 1.42100 * 106.40486 * 36.46294 * 20 19 14 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 29 29 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 30 30 H 1.08000 * 123.47277 * 359.97438 * 15 14 12 31 31 H 0.97003 * 120.00063 * 359.97438 * 21 20 19 32 32 H 0.97000 * 119.99986 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1866 -6.0981 -0.0047 13 8 3.4029 -6.0980 -0.0051 14 6 1.4507 -7.3727 -0.0058 15 6 0.0086 -7.4598 0.0007 16 6 -0.4370 -8.7117 -0.0066 17 17 -2.1128 -9.1647 -0.0066 18 16 0.9043 -9.8435 -0.0081 19 6 2.0583 -8.5891 -0.0068 20 16 3.8030 -8.8353 -0.0078 21 7 4.0973 -10.2607 0.7821 22 8 4.1782 -9.0425 -1.3627 23 8 4.3540 -7.8062 0.8026 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5576 0.8880 27 1 2.8719 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.5427 -4.9308 -0.0033 30 1 -0.6403 -6.5965 0.0073 31 1 3.3590 -10.7792 1.1385 32 1 5.0081 -10.5772 0.8885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154131055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -80.760296 kcal Electronic energy + Delta-G solvation = -22026.280051 eV Core-core repulsion = 18266.867756 eV Total energy + Delta-G solvation = -3759.412295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95919 -37.82464 -37.04081 -36.77809 -35.75811 -35.01539 -33.51866 -32.89246 -30.41658 -29.83270 -26.17618 -24.18417 -22.08697 -21.15757 -20.68990 -19.46492 -19.23552 -17.56828 -17.00225 -16.82492 -16.46530 -15.76340 -15.67486 -15.36690 -15.16530 -14.78125 -14.45598 -14.19690 -13.60630 -13.40005 -13.13277 -12.42098 -12.32186 -12.30248 -12.10319 -11.89993 -11.89294 -11.54245 -11.33728 -11.22666 -11.02691 -10.78820 -10.66800 -10.36521 -9.90363 -9.70369 -9.56338 -9.28434 -9.08672 -8.60265 -8.39140 -6.10564 -4.13418 -0.32391 0.16291 0.34293 0.93633 1.32640 1.50995 2.90724 3.24788 3.31879 3.34780 3.35908 3.42194 3.58048 4.39192 4.46122 4.50306 4.91530 4.92023 5.14047 5.26799 5.42528 5.66905 6.25993 6.31273 6.66131 6.68017 6.75610 7.46536 7.57584 7.77227 7.87544 8.22861 8.39879 8.92071 9.51600 11.01027 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.003229 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.724801 B = 8669.816397 C =10563.295364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.119 3.881 11 N -0.703 5.703 12 C 0.534 3.466 13 O -0.492 6.492 14 C 0.007 3.993 15 C -0.112 4.112 16 C -0.128 4.128 17 Cl 0.007 6.993 18 S 0.300 5.700 19 C -0.768 4.768 20 S 2.720 3.280 21 N -1.258 6.258 22 O -0.947 6.947 23 O -0.895 6.895 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.398 0.602 30 H 0.174 0.826 31 H 0.410 0.590 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -26.211 2.041 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.003 4.003 11 N -0.354 5.354 12 C 0.316 3.684 13 O -0.369 6.369 14 C -0.015 4.015 15 C -0.143 4.143 16 C -0.273 4.273 17 Cl 0.035 6.965 18 S 0.567 5.433 19 C -0.968 4.968 20 S 2.799 3.201 21 N -0.933 5.933 22 O -0.936 6.936 23 O -0.883 6.883 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.232 0.768 30 H 0.191 0.809 31 H 0.236 0.764 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.046 -26.923 1.558 26.989 hybrid contribution -1.273 1.926 0.350 2.335 sum -2.319 -24.998 1.908 25.178 Atomic orbital electron populations 1.69939 1.06104 1.27035 1.50275 1.24986 0.94894 0.99426 0.94905 0.86555 0.79504 0.82545 0.78840 1.20068 1.21269 1.20070 1.21000 0.93299 0.90269 1.51545 0.92152 1.19340 0.94190 0.91039 0.97941 1.21902 0.96192 0.80591 1.01582 1.46188 1.10552 1.06187 1.72436 1.17720 0.87722 0.83213 0.79786 1.91059 1.11553 1.86414 1.47848 1.20083 0.92328 0.93030 0.96077 1.21603 0.93736 0.97278 1.01681 1.25480 0.92159 0.98364 1.11298 1.98418 1.09322 1.91972 1.96761 1.82592 0.89513 1.03321 1.67894 1.35553 1.32261 1.04848 1.24177 1.01826 0.71241 0.72379 0.74642 1.53328 1.17260 1.44492 1.78250 1.93621 1.79241 1.85370 1.35404 1.93753 1.73019 1.52641 1.68914 0.92775 0.95844 0.95827 0.91734 0.91858 0.76778 0.80913 0.76432 0.74574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 11 N -0.70 -12.24 5.53 -61.45 -0.34 -12.58 16 12 C 0.53 9.46 7.75 -12.63 -0.10 9.36 16 13 O -0.49 -10.45 12.32 -19.95 -0.25 -10.70 16 14 C 0.01 0.09 5.98 -104.63 -0.63 -0.53 16 15 C -0.11 -1.20 9.84 -38.97 -0.38 -1.58 16 16 C -0.13 -1.19 7.01 28.89 0.20 -0.99 16 17 Cl 0.01 0.05 29.27 -51.86 -1.52 -1.47 16 18 S 0.30 2.42 22.39 -107.50 -2.41 0.01 16 19 C -0.77 -9.31 6.29 29.92 0.19 -9.12 16 20 S 2.72 35.52 5.67 -107.50 -0.61 34.91 16 21 N -1.26 -8.89 9.53 60.35 0.57 -8.31 16 22 O -0.95 -15.12 18.02 -57.17 -1.03 -16.15 16 23 O -0.89 -15.57 14.32 -67.43 -0.97 -16.54 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.40 5.75 7.02 -40.82 -0.29 5.46 16 30 H 0.17 1.53 7.10 -52.49 -0.37 1.16 16 31 H 0.41 1.71 8.34 -34.48 -0.29 1.42 16 32 H 0.42 2.13 8.96 -34.47 -0.31 1.82 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -36.60 323.37 -9.73 -46.33 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.49 Total: 1.78 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.29 Total: -13.34 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.97 Total: -46.05 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -2.24 Total: -43.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 37.94 SS G_CDS: -3.02 Total: 34.92 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.52 Total: -1.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.60 -9.73 -46.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154131055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.430 kcal (2) G-P(sol) polarization free energy of solvation -36.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds