Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47196 * 239.99790 * 3 2 1 5 5 H 1.48494 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 120.00287 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21637 * 119.99895 * 0.02562 * 12 11 10 14 14 C 1.47176 * 120.00228 * 180.02562 * 12 11 10 15 15 C 1.44475 * 123.45572 * 359.70793 * 14 12 11 16 16 C 1.32891 * 113.05106 * 179.76635 * 15 14 12 17 17 Cl 1.73595 * 124.72049 * 180.19435 * 16 15 14 18 18 S 1.75502 * 110.55982 * 0.48403 * 16 15 14 19 19 C 1.35973 * 123.45943 * 180.02562 * 14 12 11 20 20 S 1.76192 * 124.57475 * 359.96356 * 19 14 12 21 21 N 1.65605 * 107.21627 * 150.00213 * 20 19 14 22 22 O 1.42103 * 106.40319 * 263.53812 * 20 19 14 23 23 O 1.42100 * 106.40486 * 36.46294 * 20 19 14 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 29 29 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 30 30 H 1.08000 * 123.47277 * 359.97438 * 15 14 12 31 31 H 0.97003 * 120.00063 * 359.97438 * 21 20 19 32 32 H 0.97000 * 119.99986 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1866 -6.0981 -0.0047 13 8 3.4029 -6.0980 -0.0051 14 6 1.4507 -7.3727 -0.0058 15 6 0.0086 -7.4598 0.0007 16 6 -0.4370 -8.7117 -0.0066 17 17 -2.1128 -9.1647 -0.0066 18 16 0.9043 -9.8435 -0.0081 19 6 2.0583 -8.5891 -0.0068 20 16 3.8030 -8.8353 -0.0078 21 7 4.0973 -10.2607 0.7821 22 8 4.1782 -9.0425 -1.3627 23 8 4.3540 -7.8062 0.8026 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5576 0.8880 27 1 2.8719 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.5427 -4.9308 -0.0033 30 1 -0.6403 -6.5965 0.0073 31 1 3.3590 -10.7792 1.1385 32 1 5.0081 -10.5772 0.8885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154131055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -110.444445 kcal Electronic energy + Delta-G solvation = -22027.567252 eV Core-core repulsion = 18266.867756 eV Total energy + Delta-G solvation = -3760.699496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24086 -38.70556 -38.18807 -37.66147 -36.95434 -36.63305 -34.87112 -34.25832 -31.76671 -31.22824 -27.68739 -25.77156 -23.20220 -22.83171 -21.79790 -20.63998 -20.19084 -18.55014 -18.47738 -17.91084 -17.76336 -17.02315 -16.83280 -16.53697 -16.48992 -16.27732 -15.92102 -15.33607 -14.94459 -14.61944 -14.38504 -14.22894 -13.35211 -13.27452 -13.26959 -13.10100 -13.05724 -12.98380 -12.87239 -12.55110 -12.52747 -12.23799 -12.08161 -11.68035 -11.52638 -11.46996 -11.03288 -10.59768 -10.50494 -10.17596 -9.77726 -8.23760 -6.33762 -1.26884 -0.83803 -0.42363 0.08710 0.39646 0.76490 1.42595 1.44703 1.52566 1.94762 1.96061 2.11880 2.43258 2.59528 3.11316 3.39050 3.58957 3.89573 3.95077 4.22705 4.47169 4.47997 4.60039 4.84335 5.13154 5.18426 5.45506 5.57566 5.77570 6.15579 6.20958 6.38853 6.78374 7.03011 7.35310 8.87848 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.003229 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.724801 B = 8669.816397 C =10563.295364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.137 3.863 11 N -0.699 5.699 12 C 0.531 3.469 13 O -0.534 6.534 14 C -0.020 4.020 15 C -0.115 4.115 16 C -0.134 4.134 17 Cl 0.025 6.975 18 S 0.407 5.593 19 C -0.786 4.786 20 S 2.731 3.269 21 N -1.232 6.232 22 O -0.984 6.984 23 O -0.946 6.946 24 H 0.266 0.734 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.412 0.588 30 H 0.186 0.814 31 H 0.426 0.574 32 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -28.198 2.321 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.014 3.986 11 N -0.351 5.351 12 C 0.315 3.685 13 O -0.413 6.413 14 C -0.043 4.043 15 C -0.146 4.146 16 C -0.280 4.280 17 Cl 0.053 6.947 18 S 0.675 5.325 19 C -0.988 4.988 20 S 2.813 3.187 21 N -0.915 5.915 22 O -0.973 6.973 23 O -0.935 6.935 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.249 0.751 30 H 0.203 0.797 31 H 0.257 0.743 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.104 -28.964 1.844 29.098 hybrid contribution -1.046 2.318 0.282 2.559 sum -3.151 -26.645 2.126 26.915 Atomic orbital electron populations 1.70037 1.07447 1.28066 1.50899 1.25825 0.95786 1.02945 0.94368 0.85525 0.78337 0.78262 0.79092 1.19440 1.20515 1.19417 1.21430 0.93626 0.91913 1.51726 0.92333 1.19142 0.94170 0.91435 0.96676 1.21390 0.95257 0.81433 1.00524 1.45930 1.11159 1.05193 1.72779 1.18259 0.87501 0.84346 0.78350 1.91043 1.13465 1.87226 1.49516 1.19664 0.93593 0.91279 0.99810 1.21578 0.92267 0.98583 1.02140 1.25659 0.93569 0.98582 1.10218 1.98435 1.07959 1.91684 1.96572 1.82221 0.86451 0.99839 1.64011 1.35423 1.32816 1.06310 1.24276 1.00908 0.71200 0.72717 0.73847 1.52735 1.18781 1.42616 1.77400 1.93578 1.80272 1.86037 1.37422 1.93701 1.74615 1.55525 1.69639 0.92516 0.96960 0.96936 0.92928 0.92908 0.75079 0.79664 0.74348 0.72947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -30.77 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.14 6.02 5.61 86.38 0.48 6.50 16 11 N -0.70 -25.04 5.53 -466.58 -2.58 -27.63 16 12 C 0.53 19.39 7.75 86.59 0.67 20.06 16 13 O -0.53 -23.72 12.32 19.95 0.25 -23.47 16 14 C -0.02 -0.54 5.98 -19.87 -0.12 -0.66 16 15 C -0.12 -2.29 9.84 22.68 0.22 -2.06 16 16 C -0.13 -2.12 7.01 66.64 0.47 -1.65 16 17 Cl 0.02 0.32 29.27 -2.72 -0.08 0.24 16 18 S 0.41 5.22 22.39 -56.49 -1.26 3.95 16 19 C -0.79 -18.11 6.29 67.29 0.42 -17.69 16 20 S 2.73 71.03 5.67 -56.49 -0.32 70.71 16 21 N -1.23 -15.15 9.53 37.02 0.35 -14.80 16 22 O -0.98 -31.63 18.02 -128.00 -2.31 -33.94 16 23 O -0.95 -34.15 14.32 -118.20 -1.69 -35.85 16 24 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.41 12.10 7.02 -92.71 -0.65 11.45 16 30 H 0.19 3.01 7.10 -2.91 -0.02 2.99 16 31 H 0.43 2.26 8.34 -96.74 -0.81 1.46 16 32 H 0.44 3.58 8.96 -96.74 -0.87 2.72 16 Total: -1.00 -81.23 323.37 -3.43 -84.66 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -1.10 Total: 7.62 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.00 Total: -23.70 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -1.94 Total: -96.09 kcal Atomic # 8 Polarization: -89.51 SS G_CDS: -3.75 Total: -93.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 76.25 SS G_CDS: -1.58 Total: 74.66 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -81.23 -3.43 -84.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154131055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds