Wall clock time and date at job start Tue Mar 31 2020 20:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36875 * 120.00022 * 2 1 4 4 H 1.08003 * 119.99906 * 214.90232 * 3 2 1 5 5 C 1.39030 * 119.99874 * 34.90969 * 3 2 1 6 6 N 1.31367 * 120.00195 * 5.20536 * 5 3 2 7 7 Si 1.86806 * 120.00069 * 185.20928 * 5 3 2 8 8 H 1.48495 * 109.46955 * 89.99639 * 7 5 3 9 9 H 1.48497 * 109.46900 * 209.99935 * 7 5 3 10 10 H 1.48505 * 109.46798 * 329.99594 * 7 5 3 11 11 C 1.34774 * 119.99923 * 180.02562 * 2 1 3 12 12 O 1.21649 * 120.00246 * 5.44789 * 11 2 1 13 13 C 1.47298 * 119.99965 * 185.44490 * 11 2 1 14 14 N 1.31621 * 126.88469 * 355.09351 * 13 11 2 15 15 N 1.28330 * 111.95254 * 179.97438 * 14 13 11 16 16 C 1.46502 * 124.29513 * 180.02562 * 15 14 13 17 17 C 1.36959 * 111.41500 * 0.02562 * 15 14 13 18 18 N 1.32574 * 134.35782 * 180.26564 * 17 15 14 19 19 C 1.31546 * 121.57800 * 180.21760 * 18 17 15 20 20 C 1.38874 * 121.64053 * 359.47627 * 19 18 17 21 21 Br 1.89100 * 120.31411 * 180.23549 * 20 19 18 22 22 C 1.38315 * 119.37230 * 0.25201 * 20 19 18 23 23 C 1.39284 * 117.91472 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47646 * 264.99956 * 1 2 3 25 25 H 1.09004 * 109.46952 * 25.00283 * 1 2 3 26 26 H 1.09001 * 109.47525 * 144.99571 * 1 2 3 27 27 H 0.97003 * 120.00687 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.46785 * 89.97629 * 16 15 14 29 29 H 1.09000 * 109.47195 * 209.97869 * 16 15 14 30 30 H 1.09001 * 109.46408 * 329.98305 * 16 15 14 31 31 H 1.07998 * 119.18116 * 179.75246 * 19 18 17 32 32 H 1.07991 * 121.04117 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.0836 1.2695 -0.5352 5 6 1.6418 2.2811 0.6891 6 7 0.5603 2.1517 1.4234 7 14 2.4977 3.9373 0.5706 8 1 1.9334 4.7057 -0.5679 9 1 2.2882 4.6940 1.8310 10 1 3.9520 3.7284 0.3544 11 6 2.1388 -1.1672 -0.0005 12 8 1.5347 -2.2183 -0.1010 13 6 3.6068 -1.1701 0.1205 14 7 4.3995 -0.1197 0.1460 15 7 5.6335 -0.4526 0.2608 16 6 6.7440 0.5013 0.3169 17 6 5.7807 -1.8128 0.3243 18 7 6.8191 -2.6280 0.4455 19 6 6.6692 -3.9345 0.4767 20 6 5.4154 -4.5261 0.3952 21 35 5.2427 -6.4084 0.4504 22 6 4.2942 -3.7255 0.2728 23 6 4.4792 -2.3455 0.2363 24 1 -0.3634 -0.0896 1.0237 25 1 -0.3633 0.9314 -0.4344 26 1 -0.3634 -0.8418 -0.5895 27 1 0.2063 2.9161 1.9045 28 1 6.9343 0.7767 1.3542 29 1 7.6378 0.0438 -0.1074 30 1 6.4861 1.3930 -0.2544 31 1 7.5425 -4.5626 0.5726 32 1 3.3063 -4.1569 0.2077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157211217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:37 Heat of formation + Delta-G solvation = 93.103779 kcal Electronic energy + Delta-G solvation = -21042.893158 eV Core-core repulsion = 17666.521513 eV Total energy + Delta-G solvation = -3376.371646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.20209 -38.67053 -38.17743 -34.85459 -33.62057 -32.38310 -31.62046 -30.69168 -29.22905 -27.60272 -25.97135 -24.79386 -24.10862 -22.44386 -21.38406 -19.31924 -18.16907 -17.13582 -16.54924 -16.16535 -15.99600 -15.40435 -14.52413 -14.37139 -14.10910 -13.93122 -13.64825 -13.24934 -12.83743 -12.63336 -12.41536 -12.33960 -11.72454 -11.40419 -11.38522 -11.17256 -11.04285 -10.81188 -10.45361 -10.41467 -10.06549 -9.92436 -9.48845 -9.16500 -8.76864 -8.66489 -8.02343 -7.67831 -6.49615 -4.10823 0.92671 1.10655 1.59300 2.43925 2.53759 3.08968 3.13873 3.17471 3.68647 3.96575 4.13096 4.31418 4.45106 4.60399 4.87106 5.02428 5.04983 5.10804 5.29710 5.48833 5.54518 5.70080 5.92637 6.00182 6.40194 6.52578 6.72083 6.86924 6.93641 7.21917 7.42240 7.72361 7.73737 8.34636 8.39177 8.95840 9.35380 9.76206 10.53546 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003858 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.411906 B = 7256.228106 C = 8529.758439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.412 5.412 3 C -0.318 4.318 4 H 0.115 0.885 5 C 0.042 3.958 6 N -0.861 5.861 7 Si 0.926 3.074 8 H -0.275 1.275 9 H -0.282 1.282 10 H -0.265 1.265 11 C 0.521 3.479 12 O -0.603 6.603 13 C 0.065 3.935 14 N -0.179 5.179 15 N -0.323 5.323 16 C 0.100 3.900 17 C 0.262 3.738 18 N -0.483 5.483 19 C 0.177 3.823 20 C -0.189 4.189 21 Br -0.041 7.041 22 C 0.046 3.954 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.272 0.728 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.169 0.831 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.629 -9.012 -1.354 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.128 5.128 3 C -0.448 4.448 4 H 0.132 0.868 5 C -0.165 4.165 6 N -0.498 5.498 7 Si 0.752 3.248 8 H -0.201 1.201 9 H -0.208 1.208 10 H -0.190 1.190 11 C 0.309 3.691 12 O -0.490 6.490 13 C -0.106 4.106 14 N -0.005 5.005 15 N -0.115 5.115 16 C -0.041 4.041 17 C 0.024 3.976 18 N -0.197 5.197 19 C 0.005 3.995 20 C -0.272 4.272 21 Br 0.043 6.957 22 C 0.016 3.984 23 C -0.173 4.173 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.186 0.814 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.046 -8.285 -1.243 14.672 hybrid contribution -0.272 0.377 0.181 0.499 sum 11.774 -7.907 -1.061 14.222 Atomic orbital electron populations 1.21379 0.79957 0.99866 1.01166 1.43472 1.05935 1.04659 1.58766 1.20141 1.07340 0.86846 1.30471 0.86753 1.25570 0.96169 1.00573 0.94219 1.69936 1.20981 1.31823 1.27069 0.85940 0.80051 0.81027 0.77820 1.20118 1.20785 1.18967 1.16744 0.83007 0.84397 0.84935 1.90638 1.67943 1.31417 1.58995 1.23022 0.95112 0.86275 1.06211 1.73959 0.87883 1.25128 1.13487 1.45654 1.05850 1.01955 1.58072 1.22008 0.85863 0.92236 1.03959 1.19561 0.90620 0.87120 1.00295 1.66648 1.31731 1.03526 1.17833 1.22519 0.95294 0.88962 0.92708 1.22517 0.96993 0.91486 1.16248 1.96656 1.98540 1.02517 1.97987 1.21007 0.99017 0.90465 0.87877 1.20112 0.93490 0.94238 1.09458 0.92541 0.91432 0.94165 0.91750 0.90492 0.89050 0.88673 0.81438 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.86 8.70 59.84 0.52 3.38 16 2 N -0.41 -10.60 2.97 -123.47 -0.37 -10.97 16 3 C -0.32 -8.04 8.12 -15.01 -0.12 -8.16 16 4 H 0.12 2.84 5.75 -52.48 -0.30 2.54 16 5 C 0.04 1.04 5.18 -17.46 -0.09 0.95 16 6 N -0.86 -22.15 11.15 55.50 0.62 -21.53 16 7 Si 0.93 19.11 29.56 -169.99 -5.02 14.09 16 8 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 C 0.52 13.23 7.62 -12.58 -0.10 13.13 16 12 O -0.60 -15.91 16.14 5.23 0.08 -15.82 16 13 C 0.06 1.48 7.05 -80.80 -0.57 0.91 16 14 N -0.18 -3.84 8.59 34.44 0.30 -3.54 16 15 N -0.32 -5.86 3.73 -67.22 -0.25 -6.11 16 16 C 0.10 1.28 11.28 59.85 0.67 1.95 16 17 C 0.26 4.79 7.95 -156.15 -1.24 3.55 16 18 N -0.48 -7.71 10.39 -12.33 -0.13 -7.84 16 19 C 0.18 2.41 10.91 -17.44 -0.19 2.22 16 20 C -0.19 -2.74 6.25 -39.32 -0.25 -2.99 16 21 Br -0.04 -0.49 33.73 -68.01 -2.29 -2.78 16 22 C 0.05 0.81 9.80 -39.16 -0.38 0.43 16 23 C -0.16 -3.26 6.35 -105.02 -0.67 -3.92 16 24 H 0.06 1.40 7.73 -51.93 -0.40 1.00 16 25 H 0.07 1.60 7.29 -51.93 -0.38 1.22 16 26 H 0.04 0.91 7.50 -51.93 -0.39 0.52 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.16 2.81 7.75 -52.49 -0.41 2.40 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -29.55 303.57 -7.60 -37.15 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -2.70 Total: 1.33 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -2.41 Total: 11.45 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.17 Total: -49.99 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.55 -7.60 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157211217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.254 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds