Wall clock time and date at job start Tue Mar 31 2020 20:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36875 * 120.00022 * 2 1 4 4 H 1.08003 * 119.99906 * 214.90232 * 3 2 1 5 5 C 1.39030 * 119.99874 * 34.90969 * 3 2 1 6 6 N 1.31367 * 120.00195 * 5.20536 * 5 3 2 7 7 Si 1.86806 * 120.00069 * 185.20928 * 5 3 2 8 8 H 1.48495 * 109.46955 * 89.99639 * 7 5 3 9 9 H 1.48497 * 109.46900 * 209.99935 * 7 5 3 10 10 H 1.48505 * 109.46798 * 329.99594 * 7 5 3 11 11 C 1.34774 * 119.99923 * 180.02562 * 2 1 3 12 12 O 1.21649 * 120.00246 * 5.44789 * 11 2 1 13 13 C 1.47298 * 119.99965 * 185.44490 * 11 2 1 14 14 N 1.31621 * 126.88469 * 355.09351 * 13 11 2 15 15 N 1.28330 * 111.95254 * 179.97438 * 14 13 11 16 16 C 1.46502 * 124.29513 * 180.02562 * 15 14 13 17 17 C 1.36959 * 111.41500 * 0.02562 * 15 14 13 18 18 N 1.32574 * 134.35782 * 180.26564 * 17 15 14 19 19 C 1.31546 * 121.57800 * 180.21760 * 18 17 15 20 20 C 1.38874 * 121.64053 * 359.47627 * 19 18 17 21 21 Br 1.89100 * 120.31411 * 180.23549 * 20 19 18 22 22 C 1.38315 * 119.37230 * 0.25201 * 20 19 18 23 23 C 1.39284 * 117.91472 * 0.02562 * 22 20 19 24 24 H 1.08999 * 109.47646 * 264.99956 * 1 2 3 25 25 H 1.09004 * 109.46952 * 25.00283 * 1 2 3 26 26 H 1.09001 * 109.47525 * 144.99571 * 1 2 3 27 27 H 0.97003 * 120.00687 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.46785 * 89.97629 * 16 15 14 29 29 H 1.09000 * 109.47195 * 209.97869 * 16 15 14 30 30 H 1.09001 * 109.46408 * 329.98305 * 16 15 14 31 31 H 1.07998 * 119.18116 * 179.75246 * 19 18 17 32 32 H 1.07991 * 121.04117 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.0836 1.2695 -0.5352 5 6 1.6418 2.2811 0.6891 6 7 0.5603 2.1517 1.4234 7 14 2.4977 3.9373 0.5706 8 1 1.9334 4.7057 -0.5679 9 1 2.2882 4.6940 1.8310 10 1 3.9520 3.7284 0.3544 11 6 2.1388 -1.1672 -0.0005 12 8 1.5347 -2.2183 -0.1010 13 6 3.6068 -1.1701 0.1205 14 7 4.3995 -0.1197 0.1460 15 7 5.6335 -0.4526 0.2608 16 6 6.7440 0.5013 0.3169 17 6 5.7807 -1.8128 0.3243 18 7 6.8191 -2.6280 0.4455 19 6 6.6692 -3.9345 0.4767 20 6 5.4154 -4.5261 0.3952 21 35 5.2427 -6.4084 0.4504 22 6 4.2942 -3.7255 0.2728 23 6 4.4792 -2.3455 0.2363 24 1 -0.3634 -0.0896 1.0237 25 1 -0.3633 0.9314 -0.4344 26 1 -0.3634 -0.8418 -0.5895 27 1 0.2063 2.9161 1.9045 28 1 6.9343 0.7767 1.3542 29 1 7.6378 0.0438 -0.1074 30 1 6.4861 1.3930 -0.2544 31 1 7.5425 -4.5626 0.5726 32 1 3.3063 -4.1569 0.2077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157211217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:37 Heat of formation + Delta-G solvation = 75.473127 kcal Electronic energy + Delta-G solvation = -21043.657681 eV Core-core repulsion = 17666.521513 eV Total energy + Delta-G solvation = -3377.136168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.64633 -40.27375 -39.80402 -36.78179 -34.98716 -33.66188 -33.46953 -32.05742 -30.44815 -29.22060 -27.66701 -26.49806 -25.51759 -23.84712 -22.92630 -21.05698 -19.77560 -18.74375 -18.00380 -17.57201 -17.30780 -17.07992 -16.31065 -16.14005 -15.81145 -15.44661 -14.82418 -14.72906 -14.40669 -13.89649 -13.86564 -13.47485 -13.31755 -13.20445 -13.17306 -12.81235 -12.59931 -12.39373 -12.07672 -11.75693 -11.48820 -11.21410 -11.07615 -10.89536 -10.56011 -10.01989 -9.71167 -9.31890 -8.35728 -6.06042 -0.47761 -0.16668 0.42588 0.81121 1.24111 1.45539 1.48010 1.58521 2.24225 2.32053 2.54188 2.63287 3.01364 3.12314 3.22068 3.63501 3.67982 3.77363 4.24350 4.35302 4.36675 4.43114 4.62069 4.67227 4.73138 4.90775 5.05355 5.14557 5.22518 5.45562 5.65042 5.82244 6.39656 6.44815 6.85718 7.07624 7.44422 7.83807 8.68831 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003858 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.411906 B = 7256.228106 C = 8529.758439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.430 5.430 3 C -0.336 4.336 4 H 0.117 0.883 5 C 0.001 3.999 6 N -0.895 5.895 7 Si 0.989 3.011 8 H -0.269 1.269 9 H -0.283 1.283 10 H -0.253 1.253 11 C 0.514 3.486 12 O -0.625 6.625 13 C 0.024 3.976 14 N -0.184 5.184 15 N -0.315 5.315 16 C 0.088 3.912 17 C 0.255 3.745 18 N -0.477 5.477 19 C 0.191 3.809 20 C -0.176 4.176 21 Br -0.008 7.008 22 C 0.029 3.971 23 C -0.187 4.187 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.274 0.726 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.215 0.785 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.845 -9.474 -1.368 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.146 5.146 3 C -0.465 4.465 4 H 0.134 0.866 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.812 3.188 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.176 1.176 11 C 0.303 3.697 12 O -0.514 6.514 13 C -0.146 4.146 14 N -0.012 5.012 15 N -0.109 5.109 16 C -0.051 4.051 17 C 0.018 3.982 18 N -0.191 5.191 19 C 0.019 3.981 20 C -0.259 4.259 21 Br 0.076 6.924 22 C -0.001 4.001 23 C -0.198 4.198 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.232 0.768 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.267 -8.748 -1.263 17.641 hybrid contribution -1.118 0.270 0.193 1.166 sum 14.149 -8.478 -1.071 16.530 Atomic orbital electron populations 1.21215 0.79952 0.99868 1.00162 1.43691 1.06319 1.05147 1.59437 1.20337 1.07769 0.87015 1.31386 0.86604 1.26413 0.96641 1.03738 0.93470 1.70044 1.22338 1.32840 1.28033 0.84976 0.79606 0.76480 0.77742 1.19406 1.20811 1.17630 1.17170 0.84464 0.84008 0.84080 1.90582 1.69013 1.32048 1.59726 1.22666 0.94199 0.88261 1.09433 1.73775 0.89318 1.25296 1.12812 1.46038 1.05650 1.02976 1.56270 1.22473 0.85033 0.91990 1.05571 1.19630 0.90440 0.87313 1.00819 1.66813 1.30357 1.04160 1.17732 1.23328 0.96304 0.88531 0.89955 1.22732 0.96376 0.93067 1.13756 1.96706 1.98571 0.99380 1.97772 1.21009 0.99702 0.90112 0.89234 1.20255 0.93812 0.94716 1.11033 0.94118 0.91637 0.93607 0.91617 0.88831 0.86424 0.87647 0.76847 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.59 8.70 127.77 1.11 7.70 16 2 N -0.43 -23.01 2.97 -662.80 -1.97 -24.97 16 3 C -0.34 -17.40 8.12 84.10 0.68 -16.72 16 4 H 0.12 5.84 5.75 -2.91 -0.02 5.83 16 5 C 0.00 0.05 5.18 84.95 0.44 0.49 16 6 N -0.90 -47.19 11.15 21.68 0.24 -46.95 16 7 Si 0.99 38.96 29.56 68.60 2.03 40.98 16 8 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 9 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 11 C 0.51 27.25 7.62 86.63 0.66 27.91 16 12 O -0.63 -34.55 16.14 -4.19 -0.07 -34.62 16 13 C 0.02 1.14 7.05 43.81 0.31 1.44 16 14 N -0.18 -7.93 8.59 -44.96 -0.39 -8.32 16 15 N -0.32 -11.04 3.73 -366.58 -1.37 -12.40 16 16 C 0.09 2.01 11.28 127.77 1.44 3.45 16 17 C 0.25 8.95 7.95 134.13 1.07 10.01 16 18 N -0.48 -13.72 10.39 -192.91 -2.00 -15.72 16 19 C 0.19 4.50 10.91 84.89 0.93 5.42 16 20 C -0.18 -4.71 6.25 22.44 0.14 -4.57 16 21 Br -0.01 -0.18 33.73 -20.37 -0.69 -0.87 16 22 C 0.03 1.03 9.80 22.54 0.22 1.25 16 23 C -0.19 -7.57 6.35 -20.12 -0.13 -7.70 16 24 H 0.04 2.13 7.73 -2.39 -0.02 2.11 16 25 H 0.06 3.24 7.29 -2.39 -0.02 3.22 16 26 H 0.05 2.18 7.50 -2.39 -0.02 2.16 16 27 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.12 2.08 8.13 -2.39 -0.02 2.06 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.14 5.33 7.75 -2.92 -0.02 5.30 16 Total: -1.00 -65.93 303.57 3.83 -62.09 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.18 Total: 12.08 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 6.87 Total: 28.69 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -5.48 Total: -108.37 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.07 Total: -34.62 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -65.93 3.83 -62.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157211217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.565 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds