Wall clock time and date at job start Tue Mar 31 2020 21:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99924 * 2 1 4 4 O 1.20828 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00303 * 179.72542 * 3 2 1 6 6 H 1.08994 * 109.46858 * 59.99658 * 5 3 2 7 7 N 1.46500 * 109.47537 * 180.02562 * 5 3 2 8 8 C 1.38403 * 120.00014 * 205.00423 * 7 5 3 9 9 N 1.32750 * 119.43403 * 359.97438 * 8 7 5 10 10 C 1.31473 * 121.73648 * 179.97438 * 9 8 7 11 11 C 1.40785 * 120.39379 * 0.02562 * 10 9 8 12 12 C 1.41189 * 120.56968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99890 * 23.64996 * 12 11 10 14 14 C 1.39866 * 120.00106 * 203.65848 * 12 11 10 15 15 N 1.30908 * 120.00037 * 17.63018 * 14 12 11 16 16 Si 1.86799 * 120.00183 * 197.63247 * 14 12 11 17 17 H 1.48502 * 109.47076 * 89.99542 * 16 14 12 18 18 H 1.48498 * 109.47541 * 209.99716 * 16 14 12 19 19 H 1.48507 * 109.47023 * 330.00152 * 16 14 12 20 20 C 1.41292 * 118.86700 * 359.97438 * 11 10 9 21 21 C 1.36666 * 118.40135 * 359.74604 * 20 11 10 22 22 Cl 1.73599 * 120.26389 * 180.25979 * 21 20 11 23 23 C 1.53007 * 109.46907 * 300.00460 * 5 3 2 24 24 F 1.39898 * 109.47069 * 59.99454 * 23 5 3 25 25 F 1.39895 * 109.46978 * 179.97438 * 23 5 3 26 26 F 1.39897 * 109.46858 * 299.99513 * 23 5 3 27 27 H 1.08997 * 109.46990 * 59.99776 * 1 2 3 28 28 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46608 * 299.99423 * 1 2 3 30 30 H 0.97002 * 119.99988 * 24.99485 * 7 5 3 31 31 H 1.08003 * 119.80068 * 179.97438 * 10 9 8 32 32 H 0.96998 * 120.00131 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.80020 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 0.0063 6 1 3.9599 0.7789 -0.8809 7 7 3.9818 2.6798 0.0056 8 6 5.2218 3.0346 -0.4964 9 7 6.0260 2.0926 -0.9740 10 6 7.2129 2.3787 -1.4620 11 6 7.6691 3.7103 -1.4908 12 6 8.9427 4.0218 -2.0145 13 1 9.4130 3.3557 -2.7227 14 6 9.5954 5.1928 -1.6159 15 7 9.2146 5.8173 -0.5302 16 14 11.0106 5.8657 -2.6327 17 1 10.4827 6.8037 -3.6559 18 1 11.9600 6.5843 -1.7454 19 1 11.7139 4.7441 -3.3055 20 6 6.8301 4.7298 -0.9878 21 6 5.6036 4.3793 -0.4971 22 17 4.5312 5.5937 0.1266 23 6 4.1081 0.5840 1.2593 24 9 3.7114 -0.7576 1.2605 25 9 5.5051 0.6568 1.2649 26 9 3.6030 1.2206 2.3981 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 3.3876 3.3614 0.3568 31 1 7.8419 1.5874 -1.8422 32 1 9.6670 6.6297 -0.2540 33 1 7.1488 5.7617 -0.9943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159878280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:18 Heat of formation + Delta-G solvation = -204.143223 kcal Electronic energy + Delta-G solvation = -27569.112621 eV Core-core repulsion = 22820.129572 eV Total energy + Delta-G solvation = -4748.983048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.80162 -47.37019 -47.18425 -40.76294 -38.92667 -36.95257 -35.70777 -35.50106 -33.86222 -30.81672 -30.68796 -28.70320 -27.48835 -25.13297 -24.00929 -22.39635 -21.48185 -20.77008 -18.75898 -18.32034 -18.19393 -17.60625 -17.38619 -17.09932 -16.33570 -16.19398 -15.46962 -14.99666 -14.42549 -14.22456 -14.14320 -13.93332 -13.71946 -13.66826 -13.47477 -13.35995 -13.27301 -13.17031 -13.03401 -12.37372 -12.26597 -12.05272 -11.91378 -11.50863 -11.33007 -11.09471 -11.04364 -10.92375 -10.78290 -10.47112 -9.98858 -9.80574 -9.19243 -8.51851 -8.28731 -7.20039 -6.91573 -4.49066 1.71751 2.15389 2.34670 2.64535 2.95039 2.99406 3.01978 3.06098 3.12369 3.44872 3.79287 3.93832 4.19196 4.41840 4.49646 4.78501 4.89171 4.97668 5.14145 5.29976 5.38587 5.63267 6.00804 6.12275 6.47898 6.72440 6.88103 6.98185 7.33128 7.41866 7.51782 7.75544 7.99893 8.19613 8.49826 8.55481 9.27792 9.96684 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.003614 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.703068 B = 7745.193452 C = 8340.639442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.462 3.538 4 O -0.478 6.478 5 C 0.143 3.857 6 H 0.159 0.841 7 N -0.710 5.710 8 C 0.260 3.740 9 N -0.489 5.489 10 C 0.015 3.985 11 C 0.049 3.951 12 C -0.444 4.444 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.788 5.788 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.260 1.260 20 C -0.095 4.095 21 C -0.081 4.081 22 Cl -0.107 7.107 23 C 0.440 3.560 24 F -0.178 7.178 25 F -0.153 7.153 26 F -0.186 7.186 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.416 0.584 31 H 0.139 0.861 32 H 0.286 0.714 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 -7.187 0.832 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.261 6.261 3 C 0.302 3.698 4 O -0.364 6.364 5 C 0.030 3.970 6 H 0.176 0.824 7 N -0.354 5.354 8 C 0.030 3.970 9 N -0.203 5.203 10 C -0.145 4.145 11 C 0.043 3.957 12 C -0.474 4.474 13 H 0.105 0.895 14 C -0.147 4.147 15 N -0.413 5.413 16 Si 0.738 3.262 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.184 1.184 20 C -0.122 4.122 21 C -0.112 4.112 22 Cl -0.079 7.079 23 C 0.382 3.618 24 F -0.160 7.160 25 F -0.134 7.134 26 F -0.167 7.167 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.257 0.743 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.863 -7.568 1.036 13.280 hybrid contribution 0.550 1.569 0.110 1.666 sum -10.313 -5.999 1.146 11.986 Atomic orbital electron populations 1.23363 0.75510 1.04102 1.02841 1.86556 1.23954 1.31902 1.83641 1.23163 0.90892 0.82333 0.73461 1.90693 1.65987 1.36151 1.43525 1.20945 0.88133 0.89362 0.98530 0.82383 1.43379 1.17544 1.02863 1.71601 1.17117 0.87800 0.87574 1.04539 1.66620 1.06227 1.34201 1.13291 1.22308 0.92080 0.94990 1.05112 1.18352 0.94014 0.90807 0.92488 1.19435 1.00496 1.05102 1.22393 0.89515 1.25973 0.98678 0.96012 0.93997 1.69791 1.37899 1.15596 1.17985 0.86196 0.80022 0.79738 0.80203 1.19143 1.20199 1.18392 1.21313 0.89510 1.01495 0.99857 1.20800 0.94370 0.86880 1.09188 1.98267 1.65996 1.56781 1.86834 1.21119 0.77765 0.77029 0.85849 1.93198 1.90687 1.35397 1.96713 1.93302 1.27737 1.95851 1.96512 1.93171 1.87218 1.81915 1.54419 0.91532 0.87607 0.91605 0.74328 0.84353 0.90329 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.27 9.54 -39.25 -0.37 -4.65 16 3 C 0.46 6.82 7.05 36.01 0.25 7.07 16 4 O -0.48 -7.84 15.59 -18.75 -0.29 -8.13 16 5 C 0.14 2.31 2.58 -69.08 -0.18 2.13 16 6 H 0.16 2.44 7.51 -51.93 -0.39 2.05 16 7 N -0.71 -13.24 4.94 -54.96 -0.27 -13.51 16 8 C 0.26 5.58 7.02 -155.05 -1.09 4.49 16 9 N -0.49 -10.63 7.93 -11.75 -0.09 -10.72 16 10 C 0.02 0.34 10.97 -16.74 -0.18 0.16 16 11 C 0.05 1.18 5.59 -106.65 -0.60 0.59 16 12 C -0.44 -10.58 9.06 -37.85 -0.34 -10.92 16 13 H 0.09 1.94 7.90 -52.49 -0.41 1.53 16 14 C 0.07 1.66 5.17 -17.34 -0.09 1.57 16 15 N -0.79 -18.87 10.92 55.54 0.61 -18.26 16 16 Si 0.91 17.24 29.59 -169.99 -5.03 12.21 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 20 C -0.10 -2.28 8.53 -38.99 -0.33 -2.62 16 21 C -0.08 -1.80 6.32 -39.57 -0.25 -2.05 16 22 Cl -0.11 -2.09 27.56 -51.86 -1.43 -3.52 16 23 C 0.44 7.23 2.82 37.16 0.10 7.33 16 24 F -0.18 -2.65 16.21 2.25 0.04 -2.61 16 25 F -0.15 -2.89 15.55 2.25 0.04 -2.86 16 26 F -0.19 -3.12 16.94 2.25 0.04 -3.08 16 27 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.42 7.71 6.40 -40.82 -0.26 7.45 16 31 H 0.14 2.82 8.06 -52.48 -0.42 2.40 16 32 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 33 H 0.14 3.54 6.19 -52.49 -0.32 3.21 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -26.21 320.54 -5.80 -32.00 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.22 Total: 9.17 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.64 Total: 9.13 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.24 Total: -42.49 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.67 Total: -12.78 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 0.11 Total: -8.55 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -1.43 Total: -3.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.21 -5.80 -32.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159878280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.139 kcal (2) G-P(sol) polarization free energy of solvation -26.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds