Wall clock time and date at job start Tue Mar 31 2020 21:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99924 * 2 1 4 4 O 1.20828 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00303 * 179.72542 * 3 2 1 6 6 H 1.08994 * 109.46858 * 59.99658 * 5 3 2 7 7 N 1.46500 * 109.47537 * 180.02562 * 5 3 2 8 8 C 1.38403 * 120.00014 * 205.00423 * 7 5 3 9 9 N 1.32750 * 119.43403 * 359.97438 * 8 7 5 10 10 C 1.31473 * 121.73648 * 179.97438 * 9 8 7 11 11 C 1.40785 * 120.39379 * 0.02562 * 10 9 8 12 12 C 1.41189 * 120.56968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99890 * 23.64996 * 12 11 10 14 14 C 1.39866 * 120.00106 * 203.65848 * 12 11 10 15 15 N 1.30908 * 120.00037 * 17.63018 * 14 12 11 16 16 Si 1.86799 * 120.00183 * 197.63247 * 14 12 11 17 17 H 1.48502 * 109.47076 * 89.99542 * 16 14 12 18 18 H 1.48498 * 109.47541 * 209.99716 * 16 14 12 19 19 H 1.48507 * 109.47023 * 330.00152 * 16 14 12 20 20 C 1.41292 * 118.86700 * 359.97438 * 11 10 9 21 21 C 1.36666 * 118.40135 * 359.74604 * 20 11 10 22 22 Cl 1.73599 * 120.26389 * 180.25979 * 21 20 11 23 23 C 1.53007 * 109.46907 * 300.00460 * 5 3 2 24 24 F 1.39898 * 109.47069 * 59.99454 * 23 5 3 25 25 F 1.39895 * 109.46978 * 179.97438 * 23 5 3 26 26 F 1.39897 * 109.46858 * 299.99513 * 23 5 3 27 27 H 1.08997 * 109.46990 * 59.99776 * 1 2 3 28 28 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46608 * 299.99423 * 1 2 3 30 30 H 0.97002 * 119.99988 * 24.99485 * 7 5 3 31 31 H 1.08003 * 119.80068 * 179.97438 * 10 9 8 32 32 H 0.96998 * 120.00131 * 180.02562 * 15 14 12 33 33 H 1.08001 * 120.80020 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 0.0063 6 1 3.9599 0.7789 -0.8809 7 7 3.9818 2.6798 0.0056 8 6 5.2218 3.0346 -0.4964 9 7 6.0260 2.0926 -0.9740 10 6 7.2129 2.3787 -1.4620 11 6 7.6691 3.7103 -1.4908 12 6 8.9427 4.0218 -2.0145 13 1 9.4130 3.3557 -2.7227 14 6 9.5954 5.1928 -1.6159 15 7 9.2146 5.8173 -0.5302 16 14 11.0106 5.8657 -2.6327 17 1 10.4827 6.8037 -3.6559 18 1 11.9600 6.5843 -1.7454 19 1 11.7139 4.7441 -3.3055 20 6 6.8301 4.7298 -0.9878 21 6 5.6036 4.3793 -0.4971 22 17 4.5312 5.5937 0.1266 23 6 4.1081 0.5840 1.2593 24 9 3.7114 -0.7576 1.2605 25 9 5.5051 0.6568 1.2649 26 9 3.6030 1.2206 2.3981 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 3.3876 3.3614 0.3568 31 1 7.8419 1.5874 -1.8422 32 1 9.6670 6.6297 -0.2540 33 1 7.1488 5.7617 -0.9943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159878280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:18 Heat of formation + Delta-G solvation = -217.087266 kcal Electronic energy + Delta-G solvation = -27569.673916 eV Core-core repulsion = 22820.129572 eV Total energy + Delta-G solvation = -4749.544344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.14507 -48.68408 -48.57512 -41.90746 -40.60193 -38.10573 -37.35897 -36.99676 -35.51952 -32.44217 -32.33776 -30.18997 -28.44834 -26.80193 -25.33313 -24.01019 -23.12535 -22.10162 -20.07164 -19.64350 -19.51889 -19.33058 -18.76823 -18.30846 -17.79072 -17.38821 -17.01931 -16.49342 -16.02921 -15.60017 -15.49842 -15.29729 -15.12728 -15.04714 -14.83530 -14.75339 -14.68725 -14.54381 -14.20102 -13.97924 -13.65810 -13.53825 -13.17061 -13.03575 -12.90730 -12.73447 -12.49861 -12.03921 -11.98954 -11.94443 -11.66848 -11.43117 -10.84327 -10.26935 -10.04128 -8.90532 -8.61247 -6.27235 0.49498 0.62769 0.89763 1.05248 1.35472 1.44916 1.52456 1.57558 1.72012 1.99846 2.22752 2.58499 2.73832 2.97493 3.20195 3.54524 3.60827 3.84266 3.97351 4.24610 4.32241 4.40981 4.69462 4.72103 4.98287 5.00130 5.13458 5.25030 5.68487 5.73148 6.04134 6.26252 6.39813 6.43162 6.73744 6.80171 7.53087 8.28404 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.003614 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.703068 B = 7745.193452 C = 8340.639442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.471 3.529 4 O -0.497 6.497 5 C 0.141 3.859 6 H 0.167 0.833 7 N -0.709 5.709 8 C 0.266 3.734 9 N -0.488 5.488 10 C 0.013 3.987 11 C 0.024 3.976 12 C -0.471 4.471 13 H 0.093 0.907 14 C 0.035 3.965 15 N -0.822 5.822 16 Si 0.984 3.016 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.253 1.253 20 C -0.111 4.111 21 C -0.094 4.094 22 Cl -0.086 7.086 23 C 0.444 3.556 24 F -0.166 7.166 25 F -0.169 7.169 26 F -0.188 7.188 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.067 0.933 30 H 0.417 0.583 31 H 0.157 0.843 32 H 0.291 0.709 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 -8.131 0.475 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.259 6.259 3 C 0.311 3.689 4 O -0.384 6.384 5 C 0.028 3.972 6 H 0.184 0.816 7 N -0.352 5.352 8 C 0.035 3.965 9 N -0.202 5.202 10 C -0.147 4.147 11 C 0.018 3.982 12 C -0.501 4.501 13 H 0.111 0.889 14 C -0.181 4.181 15 N -0.447 5.447 16 Si 0.805 3.195 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.177 1.177 20 C -0.138 4.138 21 C -0.126 4.126 22 Cl -0.058 7.058 23 C 0.387 3.613 24 F -0.147 7.147 25 F -0.150 7.150 26 F -0.169 7.169 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.257 0.743 31 H 0.174 0.826 32 H 0.102 0.898 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.593 -8.552 0.692 14.423 hybrid contribution 0.571 1.760 0.295 1.874 sum -11.022 -6.792 0.987 12.985 Atomic orbital electron populations 1.23776 0.73048 1.06597 1.03215 1.86543 1.26205 1.30219 1.82893 1.22757 0.90090 0.82836 0.73180 1.90691 1.66145 1.36924 1.44657 1.21050 0.89640 0.87806 0.98665 0.81601 1.43318 1.16551 1.04213 1.71095 1.17295 0.88465 0.87353 1.03427 1.66701 1.06060 1.34054 1.13382 1.22610 0.92483 0.94970 1.04648 1.18639 0.94644 0.91567 0.93315 1.19710 1.00873 1.06304 1.23202 0.88851 1.26769 1.00957 0.95790 0.94572 1.69849 1.39352 1.16182 1.19326 0.85150 0.76867 0.79023 0.78461 1.18960 1.19859 1.17671 1.21245 0.90441 1.00944 1.01178 1.20900 0.94469 0.88013 1.09212 1.98261 1.65070 1.55978 1.86493 1.21027 0.76951 0.77567 0.85775 1.93222 1.90447 1.34401 1.96656 1.93272 1.29183 1.95989 1.96589 1.93169 1.87127 1.82052 1.54572 0.91070 0.84089 0.91399 0.74274 0.82617 0.89849 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.34 -7.68 9.54 -51.38 -0.49 -8.17 16 3 C 0.47 13.10 7.05 71.24 0.50 13.60 16 4 O -0.50 -15.58 15.59 21.96 0.34 -15.23 16 5 C 0.14 4.35 2.58 44.25 0.11 4.46 16 6 H 0.17 4.88 7.51 -2.39 -0.02 4.87 16 7 N -0.71 -25.83 4.94 -327.78 -1.62 -27.45 16 8 C 0.27 11.32 7.02 133.32 0.94 12.25 16 9 N -0.49 -20.94 7.93 -191.09 -1.52 -22.45 16 10 C 0.01 0.57 10.97 85.37 0.94 1.51 16 11 C 0.02 1.17 5.59 -21.18 -0.12 1.05 16 12 C -0.47 -22.65 9.06 23.39 0.21 -22.44 16 13 H 0.09 4.20 7.90 -2.91 -0.02 4.17 16 14 C 0.04 1.61 5.17 85.22 0.44 2.05 16 15 N -0.82 -40.02 10.92 21.82 0.24 -39.78 16 16 Si 0.98 35.16 29.59 68.60 2.03 37.19 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 18 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 19 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 20 C -0.11 -5.45 8.53 22.65 0.19 -5.26 16 21 C -0.09 -4.21 6.32 22.28 0.14 -4.07 16 22 Cl -0.09 -3.36 27.56 -2.72 -0.07 -3.43 16 23 C 0.44 14.00 2.82 71.98 0.20 14.21 16 24 F -0.17 -4.60 16.21 44.97 0.73 -3.87 16 25 F -0.17 -6.26 15.55 44.97 0.70 -5.56 16 26 F -0.19 -6.07 16.94 44.97 0.76 -5.31 16 27 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.14 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.42 15.10 6.40 -92.71 -0.59 14.50 16 31 H 0.16 6.27 8.06 -2.91 -0.02 6.25 16 32 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 33 H 0.13 6.56 6.19 -2.91 -0.02 6.54 16 Total: -1.00 -55.57 320.54 6.47 -49.10 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.62 Total: 26.03 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 4.76 Total: 18.94 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -2.90 Total: -89.68 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.15 Total: -23.41 kcal Atomic # 9 Polarization: -16.93 SS G_CDS: 2.19 Total: -14.74 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.07 Total: -3.43 kcal Total: -55.57 6.47 -49.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159878280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.991 kcal (2) G-P(sol) polarization free energy of solvation -55.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds