Wall clock time and date at job start Tue Mar 31 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47155 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00100 * 3 2 1 6 6 H 1.48508 * 109.46746 * 149.99878 * 3 2 1 7 7 C 1.38643 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.35761 * 117.00207 * 185.42322 * 9 7 2 11 11 C 1.38782 * 120.08800 * 5.81940 * 10 9 7 12 12 C 1.38118 * 119.99871 * 179.97438 * 11 10 9 13 13 C 1.38438 * 120.19324 * 359.79324 * 12 11 10 14 14 Br 1.89102 * 119.91227 * 180.22856 * 13 12 11 15 15 C 1.38263 * 120.18091 * 0.46634 * 13 12 11 16 16 C 1.38690 * 119.99285 * 359.50707 * 15 13 12 17 17 N 1.40247 * 120.09734 * 180.23258 * 16 15 13 18 18 N 1.28723 * 125.94124 * 130.19824 * 17 16 15 19 19 N 1.28606 * 110.23730 * 179.97438 * 18 17 16 20 20 C 1.33764 * 109.06123 * 0.02562 * 19 18 17 21 21 C 1.35386 * 106.53560 * 359.75536 * 20 19 18 22 22 C 1.50698 * 126.97978 * 180.23351 * 21 20 19 23 23 N 1.46900 * 109.46869 * 95.28874 * 22 21 20 24 24 H 0.96998 * 120.00152 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99804 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.90014 * 180.02562 * 12 11 10 27 27 H 1.08003 * 120.00622 * 179.79025 * 15 13 12 28 28 H 1.08003 * 126.73396 * 180.02562 * 20 19 18 29 29 H 1.08992 * 109.47517 * 215.29382 * 22 21 20 30 30 H 1.09000 * 109.46847 * 335.29545 * 22 21 20 31 31 H 1.00905 * 110.99711 * 56.05236 * 23 22 21 32 32 H 1.00907 * 111.00060 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0697 -3.5039 0.1164 11 6 3.4361 -3.4283 0.3469 12 6 4.1818 -4.5850 0.4639 13 6 3.5695 -5.8219 0.3562 14 35 4.5970 -7.4006 0.5241 15 6 2.2096 -5.9063 0.1213 16 6 1.4534 -4.7497 0.0031 17 7 0.0730 -4.8327 -0.2304 18 7 -0.8432 -4.2123 0.4274 19 7 -2.0041 -4.5074 -0.0407 20 6 -1.8602 -5.3644 -1.0576 21 6 -0.5306 -5.5793 -1.1951 22 6 0.1441 -6.4673 -2.2087 23 7 0.5581 -5.6627 -3.3659 24 1 -0.4850 0.8400 0.0004 25 1 3.9163 -2.4650 0.4355 26 1 5.2450 -4.5243 0.6436 27 1 1.7354 -6.8727 0.0344 28 1 -2.6495 -5.7964 -1.6549 29 1 1.0202 -6.9330 -1.7577 30 1 -0.5515 -7.2408 -2.5342 31 1 1.1527 -4.8988 -3.0811 32 1 1.0131 -6.2359 -4.0607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169310550.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:16 Heat of formation + Delta-G solvation = 110.234281 kcal Electronic energy + Delta-G solvation = -21149.168483 eV Core-core repulsion = 17773.539672 eV Total energy + Delta-G solvation = -3375.628811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.77166 -39.54120 -37.10620 -35.04052 -33.93451 -32.70821 -31.21777 -30.28362 -29.71331 -28.11953 -25.73591 -25.13928 -23.33930 -22.49897 -21.26511 -20.16346 -18.51233 -17.89261 -16.76809 -16.14826 -15.79519 -15.09556 -14.88327 -14.70723 -14.36835 -14.07100 -13.85005 -13.75321 -13.28569 -13.07388 -12.54295 -12.37156 -12.04632 -11.54483 -11.40267 -11.26198 -10.93903 -10.68363 -10.61288 -10.30579 -10.12420 -9.92859 -9.81933 -9.13613 -8.85944 -8.61866 -8.52463 -7.65151 -6.79392 -4.38579 1.26807 1.59556 1.92071 2.25982 2.92538 2.95295 2.96719 3.01882 3.17033 3.66140 3.86412 4.58521 4.66188 4.75609 4.83406 4.98629 5.11319 5.28027 5.33915 5.53526 5.57973 5.86929 5.90026 6.01230 6.06941 6.37878 6.44783 6.65293 6.71158 6.82608 6.99419 7.05826 7.39605 7.45926 7.57832 8.58842 9.14926 9.16973 10.33067 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.005252 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.578270 B = 5330.491229 C = 7281.740048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.047 3.953 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.101 0.899 9 O -0.125 6.125 10 C 0.169 3.831 11 C -0.217 4.217 12 C -0.024 4.024 13 C -0.183 4.183 14 Br -0.073 7.073 15 C -0.023 4.023 16 C 0.017 3.983 17 N -0.209 5.209 18 N -0.040 5.040 19 N -0.283 5.283 20 C -0.037 4.037 21 C -0.036 4.036 22 C 0.140 3.860 23 N -0.842 5.842 24 H 0.279 0.721 25 H 0.147 0.853 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.184 0.816 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.347 0.653 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -12.431 -2.941 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.119 0.881 9 O -0.022 6.022 10 C 0.107 3.893 11 C -0.237 4.237 12 C -0.044 4.044 13 C -0.264 4.264 14 Br 0.012 6.988 15 C -0.045 4.045 16 C -0.076 4.076 17 N 0.002 4.998 18 N -0.019 5.019 19 N -0.148 5.148 20 C -0.195 4.195 21 C -0.166 4.166 22 C 0.008 3.992 23 N -0.373 5.373 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.201 0.799 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.160 0.840 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.226 -11.593 -1.836 13.783 hybrid contribution 1.471 0.175 -0.613 1.603 sum 8.697 -11.418 -2.449 14.560 Atomic orbital electron populations 1.70092 1.06167 1.28880 1.39901 1.25515 0.95961 0.99380 0.95508 0.85607 0.79032 0.79138 0.79133 1.19401 1.19749 1.18723 1.21574 0.92197 0.80274 1.53329 0.88131 1.84090 1.34274 1.11523 1.72353 1.19051 0.90468 0.86615 0.93157 1.21043 0.92839 0.99349 1.10505 1.20820 0.99391 0.90171 0.94028 1.20685 0.93401 0.91220 1.21050 1.96543 1.71122 1.33443 1.97741 1.20354 0.92068 0.95999 0.96114 1.16332 0.78475 0.92144 1.20615 1.44220 1.05940 1.28833 1.20818 1.78639 0.90933 1.14690 1.17597 1.75102 1.15442 1.13346 1.10903 1.23184 0.94571 1.01616 1.00122 1.22143 0.93742 1.03829 0.96879 1.20128 0.98225 0.92800 0.88050 1.58681 1.50854 1.14564 1.13204 0.91045 0.83569 0.85506 0.85285 0.79877 0.94093 0.88581 0.83976 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.01 13.67 55.48 0.76 -22.25 16 2 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.95 18.86 29.55 -169.99 -5.02 13.84 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.40 -10.16 9.44 30.88 0.29 -9.87 16 8 H 0.10 2.27 5.30 -52.48 -0.28 1.99 16 9 O -0.13 -3.32 8.98 0.09 0.00 -3.32 16 10 C 0.17 3.72 6.64 -38.93 -0.26 3.46 16 11 C -0.22 -4.04 9.13 -39.42 -0.36 -4.40 16 12 C -0.02 -0.37 9.77 -39.55 -0.39 -0.76 16 13 C -0.18 -2.82 6.22 -39.50 -0.25 -3.06 16 14 Br -0.07 -0.93 33.69 -68.01 -2.29 -3.22 16 15 C -0.02 -0.38 8.27 -39.41 -0.33 -0.71 16 16 C 0.02 0.34 6.03 -83.39 -0.50 -0.16 16 17 N -0.21 -4.41 3.29 -6.66 -0.02 -4.43 16 18 N -0.04 -0.98 12.49 60.35 0.75 -0.22 16 19 N -0.28 -6.42 12.39 30.24 0.37 -6.05 16 20 C -0.04 -0.69 11.99 -17.73 -0.21 -0.90 16 21 C -0.04 -0.64 6.37 -81.71 -0.52 -1.16 16 22 C 0.14 1.85 6.97 -4.98 -0.03 1.82 16 23 N -0.84 -11.19 9.61 -11.41 -0.11 -11.30 16 24 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.15 2.64 5.71 -52.49 -0.30 2.34 16 26 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.13 1.90 6.92 -52.48 -0.36 1.54 16 28 H 0.18 2.58 8.06 -52.48 -0.42 2.16 16 29 H 0.04 0.51 5.71 -51.93 -0.30 0.21 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.35 5.31 8.99 -39.29 -0.35 4.95 16 32 H 0.34 3.45 9.08 -39.29 -0.36 3.09 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -30.48 305.61 -5.96 -36.43 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.35 Total: 10.57 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.65 Total: -14.64 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.76 Total: -44.25 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.00 Total: -3.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -2.29 Total: -3.22 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.48 -5.96 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169310550.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.668 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds