Wall clock time and date at job start Tue Mar 31 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47155 * 269.99642 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00100 * 3 2 1 6 6 H 1.48508 * 109.46746 * 149.99878 * 3 2 1 7 7 C 1.38643 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.35761 * 117.00207 * 185.42322 * 9 7 2 11 11 C 1.38782 * 120.08800 * 5.81940 * 10 9 7 12 12 C 1.38118 * 119.99871 * 179.97438 * 11 10 9 13 13 C 1.38438 * 120.19324 * 359.79324 * 12 11 10 14 14 Br 1.89102 * 119.91227 * 180.22856 * 13 12 11 15 15 C 1.38263 * 120.18091 * 0.46634 * 13 12 11 16 16 C 1.38690 * 119.99285 * 359.50707 * 15 13 12 17 17 N 1.40247 * 120.09734 * 180.23258 * 16 15 13 18 18 N 1.28723 * 125.94124 * 130.19824 * 17 16 15 19 19 N 1.28606 * 110.23730 * 179.97438 * 18 17 16 20 20 C 1.33764 * 109.06123 * 0.02562 * 19 18 17 21 21 C 1.35386 * 106.53560 * 359.75536 * 20 19 18 22 22 C 1.50698 * 126.97978 * 180.23351 * 21 20 19 23 23 N 1.46900 * 109.46869 * 95.28874 * 22 21 20 24 24 H 0.96998 * 120.00152 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99804 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.90014 * 180.02562 * 12 11 10 27 27 H 1.08003 * 120.00622 * 179.79025 * 15 13 12 28 28 H 1.08003 * 126.73396 * 180.02562 * 20 19 18 29 29 H 1.08992 * 109.47517 * 215.29382 * 22 21 20 30 30 H 1.09000 * 109.46847 * 335.29545 * 22 21 20 31 31 H 1.00905 * 110.99711 * 56.05236 * 23 22 21 32 32 H 1.00907 * 111.00060 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0016 10 6 2.0697 -3.5039 0.1164 11 6 3.4361 -3.4283 0.3469 12 6 4.1818 -4.5850 0.4639 13 6 3.5695 -5.8219 0.3562 14 35 4.5970 -7.4006 0.5241 15 6 2.2096 -5.9063 0.1213 16 6 1.4534 -4.7497 0.0031 17 7 0.0730 -4.8327 -0.2304 18 7 -0.8432 -4.2123 0.4274 19 7 -2.0041 -4.5074 -0.0407 20 6 -1.8602 -5.3644 -1.0576 21 6 -0.5306 -5.5793 -1.1951 22 6 0.1441 -6.4673 -2.2087 23 7 0.5581 -5.6627 -3.3659 24 1 -0.4850 0.8400 0.0004 25 1 3.9163 -2.4650 0.4355 26 1 5.2450 -4.5243 0.6436 27 1 1.7354 -6.8727 0.0344 28 1 -2.6495 -5.7964 -1.6549 29 1 1.0202 -6.9330 -1.7577 30 1 -0.5515 -7.2408 -2.5342 31 1 1.1527 -4.8988 -3.0811 32 1 1.0131 -6.2359 -4.0607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169310550.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:16 Heat of formation + Delta-G solvation = 87.272791 kcal Electronic energy + Delta-G solvation = -21150.164168 eV Core-core repulsion = 17773.539672 eV Total energy + Delta-G solvation = -3376.624496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.32126 -41.12513 -38.69066 -36.27247 -35.39099 -34.46238 -32.60824 -31.69420 -31.18154 -29.59469 -27.49222 -26.42000 -24.80384 -24.03833 -22.77524 -21.64648 -20.17665 -19.45079 -18.28577 -17.66823 -17.00768 -16.61512 -16.39805 -16.05912 -15.84634 -15.65923 -15.20402 -15.16165 -14.73764 -14.54299 -13.82263 -13.72905 -13.61601 -12.97858 -12.85558 -12.78438 -12.41969 -12.18412 -12.13821 -11.81930 -11.56464 -11.32258 -11.24310 -10.83954 -10.25509 -10.06617 -9.68099 -9.20204 -8.58225 -6.28968 -0.21390 0.12932 0.57670 0.78575 1.32166 1.41750 1.48520 1.51555 1.62531 2.07313 2.37403 2.94988 3.05425 3.42169 3.68374 3.73520 3.74007 3.95772 4.05270 4.10973 4.32239 4.45119 4.50449 4.63744 4.71942 4.91252 4.96770 5.15940 5.23331 5.26404 5.51441 5.78110 5.90149 5.97502 6.50061 6.81292 7.49688 7.56430 8.60523 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.005252 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.578270 B = 5330.491229 C = 7281.740048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.015 4.015 3 Si 1.021 2.979 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.242 1.242 7 C -0.422 4.422 8 H 0.119 0.881 9 O -0.187 6.187 10 C 0.147 3.853 11 C -0.219 4.219 12 C -0.011 4.011 13 C -0.162 4.162 14 Br -0.028 7.028 15 C -0.018 4.018 16 C 0.007 3.993 17 N -0.215 5.215 18 N -0.105 5.105 19 N -0.315 5.315 20 C -0.044 4.044 21 C -0.025 4.025 22 C 0.143 3.857 23 N -0.849 5.849 24 H 0.275 0.725 25 H 0.150 0.850 26 H 0.166 0.834 27 H 0.155 0.845 28 H 0.224 0.776 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.334 0.666 32 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 -15.712 -3.784 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.216 4.216 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.165 1.165 7 C -0.496 4.496 8 H 0.136 0.864 9 O -0.088 6.088 10 C 0.090 3.910 11 C -0.240 4.240 12 C -0.030 4.030 13 C -0.242 4.242 14 Br 0.057 6.943 15 C -0.040 4.040 16 C -0.086 4.086 17 N -0.004 5.004 18 N -0.082 5.082 19 N -0.179 5.179 20 C -0.202 4.202 21 C -0.156 4.156 22 C 0.011 3.989 23 N -0.381 5.381 24 H 0.084 0.916 25 H 0.167 0.833 26 H 0.183 0.817 27 H 0.172 0.828 28 H 0.241 0.759 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 10.420 -14.953 -2.673 18.420 hybrid contribution 0.728 0.579 -0.384 1.006 sum 11.147 -14.373 -3.057 18.445 Atomic orbital electron populations 1.70271 1.08424 1.29273 1.45314 1.26759 0.96670 1.03186 0.94953 0.84557 0.78100 0.73988 0.79413 1.18661 1.20131 1.16544 1.22056 0.93059 0.80678 1.53846 0.86405 1.84107 1.35606 1.12506 1.76600 1.19741 0.91944 0.86648 0.92671 1.21232 0.91720 1.00910 1.10127 1.21227 1.00997 0.89048 0.91777 1.21116 0.93407 0.93070 1.16625 1.96633 1.69697 1.30546 1.97468 1.20631 0.92396 0.95757 0.95174 1.16822 0.78576 0.92709 1.20451 1.44399 1.05990 1.28696 1.21308 1.78607 0.92015 1.17311 1.20289 1.75011 1.15548 1.14672 1.12686 1.23955 0.96208 1.00699 0.99363 1.23001 0.93779 1.02579 0.96227 1.20386 0.99295 0.92216 0.86997 1.58641 1.51043 1.14729 1.13674 0.91596 0.83299 0.81667 0.82799 0.75944 0.92654 0.84972 0.85511 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.80 13.67 21.61 0.30 -54.50 16 2 C -0.01 -0.79 5.49 84.83 0.47 -0.33 16 3 Si 1.02 40.50 29.55 68.60 2.03 42.53 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.24 -8.59 7.11 99.48 0.71 -7.88 16 7 C -0.42 -22.69 9.44 67.92 0.64 -22.05 16 8 H 0.12 5.50 5.30 -2.91 -0.02 5.49 16 9 O -0.19 -10.54 8.98 -22.59 -0.20 -10.74 16 10 C 0.15 6.63 6.64 22.69 0.15 6.78 16 11 C -0.22 -7.95 9.13 22.37 0.20 -7.75 16 12 C -0.01 -0.30 9.77 22.29 0.22 -0.08 16 13 C -0.16 -4.31 6.22 22.32 0.14 -4.17 16 14 Br -0.03 -0.57 33.69 -20.37 -0.69 -1.26 16 15 C -0.02 -0.53 8.27 22.38 0.19 -0.35 16 16 C 0.01 0.27 6.03 38.19 0.23 0.50 16 17 N -0.21 -9.20 3.29 -174.97 -0.58 -9.78 16 18 N -0.10 -5.39 12.49 37.02 0.46 -4.92 16 19 N -0.31 -14.90 12.39 -58.24 -0.72 -15.62 16 20 C -0.04 -1.60 11.99 83.74 1.00 -0.60 16 21 C -0.02 -0.85 6.37 41.24 0.26 -0.59 16 22 C 0.14 3.30 6.97 85.56 0.60 3.90 16 23 N -0.85 -20.53 9.61 -190.02 -1.83 -22.36 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.15 5.28 5.71 -2.91 -0.02 5.27 16 26 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.15 3.88 6.92 -2.91 -0.02 3.86 16 28 H 0.22 5.83 8.06 -2.91 -0.02 5.81 16 29 H 0.06 1.13 5.71 -2.39 -0.01 1.12 16 30 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.33 9.83 8.99 -89.69 -0.81 9.03 16 32 H 0.36 6.13 9.08 -89.69 -0.81 5.32 16 Total: -1.00 -74.96 305.61 2.47 -72.50 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.40 Total: 28.90 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.10 Total: -24.73 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -2.37 Total: -107.19 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.20 Total: -10.74 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.69 Total: -1.26 kcal Total: -74.96 2.47 -72.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169310550.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.770 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds