Wall clock time and date at job start Tue Mar 31 2020 21:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46907 * 269.99507 * 3 2 1 5 5 H 1.48500 * 109.47463 * 29.99375 * 3 2 1 6 6 H 1.48500 * 109.47210 * 149.99783 * 3 2 1 7 7 C 1.38801 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00206 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47376 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00074 * 180.02562 * 11 10 9 14 14 N 1.40093 * 119.99925 * 179.97438 * 13 11 10 15 15 C 1.38553 * 120.00063 * 179.97438 * 14 13 11 16 16 C 1.38656 * 121.07036 * 0.02562 * 15 14 13 17 17 C 1.38862 * 119.56764 * 179.97438 * 16 15 14 18 18 Cl 1.73609 * 119.04124 * 180.02562 * 17 16 15 19 19 N 1.31466 * 121.91338 * 359.44660 * 17 16 15 20 20 C 1.33759 * 121.76481 * 0.84392 * 19 17 16 21 21 N 1.33720 * 120.77140 * 179.17605 * 20 19 17 22 22 C 1.31196 * 121.41259 * 180.02562 * 21 20 19 23 23 C 1.39111 * 121.79118 * 359.97438 * 22 21 20 24 24 C 1.36828 * 119.77986 * 0.02562 * 23 22 21 25 25 C 1.40296 * 118.13788 * 0.25898 * 24 23 22 26 26 H 0.96994 * 120.00214 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46914 * 59.99752 * 10 9 7 28 28 H 1.09004 * 109.46875 * 300.00343 * 10 9 7 29 29 H 0.96995 * 119.99663 * 359.97438 * 13 11 10 30 30 H 0.96995 * 120.00411 * 359.97438 * 14 13 11 31 31 H 1.07998 * 120.21213 * 359.95568 * 16 15 14 32 32 H 1.08001 * 119.10492 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.11048 * 179.97438 * 23 22 21 34 34 H 1.08002 * 120.92777 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 7 2.3530 -7.6551 0.0003 15 6 3.2338 -8.7246 0.0002 16 6 4.6054 -8.5221 0.0006 17 6 5.4598 -9.6168 0.0010 18 17 7.1748 -9.3474 0.0023 19 7 5.0076 -10.8512 0.0118 20 6 3.6976 -11.1213 0.0062 21 7 3.2596 -12.3848 0.0008 22 6 1.9777 -12.6641 -0.0052 23 6 1.0099 -11.6648 -0.0058 24 6 1.3902 -10.3504 -0.0006 25 6 2.7625 -10.0587 -0.0002 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1245 -3.7313 -0.8895 29 1 3.8010 -6.1834 0.0006 30 1 1.3963 -7.8148 0.0003 31 1 5.0067 -7.5194 0.0004 32 1 1.6653 -13.6979 -0.0099 33 1 -0.0381 -11.9256 -0.0113 34 1 0.6545 -9.5597 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177422056.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:20 Heat of formation + Delta-G solvation = 70.988041 kcal Electronic energy + Delta-G solvation = -22484.123763 eV Core-core repulsion = 18763.973664 eV Total energy + Delta-G solvation = -3720.150099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68001 -39.89409 -38.39210 -37.22239 -36.42871 -34.10508 -32.57126 -32.04681 -31.10433 -30.40896 -28.38255 -25.63940 -25.10785 -24.65180 -22.45038 -21.54116 -19.78146 -18.77052 -18.43432 -17.62236 -17.09094 -16.58983 -15.85299 -15.82442 -15.41278 -15.35418 -15.11326 -14.92656 -14.42197 -14.36622 -13.73914 -13.57822 -13.40712 -13.33403 -12.76926 -12.31732 -12.30902 -11.63820 -11.42142 -11.19760 -11.14784 -11.01548 -10.90350 -10.78200 -10.06929 -9.99483 -9.59751 -9.47558 -9.29270 -9.19841 -8.46594 -7.92747 -6.69554 -6.36016 -4.09195 -0.10289 0.15901 1.25881 1.45734 1.50344 2.32235 2.59865 3.01782 3.14162 3.21171 3.27421 3.47747 3.69458 3.74201 4.00145 4.03512 4.05789 4.30067 4.41817 4.62304 4.73164 4.90369 4.99689 5.00100 5.09814 5.33835 5.36381 5.54362 5.56526 5.61016 5.85004 6.06805 6.22021 6.80951 7.00195 7.16085 7.46379 7.77880 8.09333 8.21018 9.09809 10.71348 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002335 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.199490 B =11986.110936 C =13610.158602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.076 0.924 9 S -0.050 6.050 10 C -0.146 4.146 11 C 0.537 3.463 12 O -0.509 6.509 13 N -0.534 5.534 14 N -0.501 5.501 15 C 0.305 3.695 16 C -0.280 4.280 17 C 0.285 3.715 18 Cl -0.020 7.020 19 N -0.511 5.511 20 C 0.370 3.630 21 N -0.472 5.472 22 C 0.173 3.827 23 C -0.192 4.192 24 C -0.028 4.028 25 C -0.199 4.199 26 H 0.270 0.730 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.426 0.574 30 H 0.440 0.560 31 H 0.146 0.854 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -21.262 -0.035 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.094 0.906 9 S 0.176 5.824 10 C -0.298 4.298 11 C 0.323 3.677 12 O -0.380 6.380 13 N -0.285 5.285 14 N -0.220 5.220 15 C 0.185 3.815 16 C -0.310 4.310 17 C 0.106 3.894 18 Cl 0.009 6.991 19 N -0.228 5.228 20 C 0.130 3.870 21 N -0.181 5.181 22 C -0.001 4.001 23 C -0.213 4.213 24 C -0.055 4.055 25 C -0.209 4.209 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.268 0.732 30 H 0.285 0.715 31 H 0.164 0.836 32 H 0.187 0.813 33 H 0.164 0.836 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.034 -22.567 -0.017 23.360 hybrid contribution 1.000 2.679 -0.013 2.859 sum 7.034 -19.888 -0.030 21.095 Atomic orbital electron populations 1.69997 1.06003 1.27749 1.46418 1.25005 0.95062 0.99157 0.94260 0.86129 0.79412 0.81293 0.78464 1.20162 1.20675 1.19582 1.22845 0.95000 0.91273 1.59616 0.90620 1.85482 1.03761 0.96292 1.96818 1.23510 1.07573 0.92731 1.05963 1.20825 0.86423 0.85236 0.75171 1.90747 1.14973 1.84857 1.47473 1.45413 1.10306 0.93734 1.79055 1.43234 1.08094 0.94085 1.76607 1.17603 0.89600 0.85388 0.88929 1.20754 0.90476 1.00155 1.19628 1.21131 0.87436 0.88703 0.92146 1.98431 1.09301 1.95444 1.95921 1.66801 1.14278 1.20841 1.20885 1.18682 0.87307 0.88020 0.92992 1.67724 1.17246 1.18830 1.14341 1.23124 0.87032 1.00551 0.89430 1.21886 1.02008 0.93097 1.04307 1.21249 0.93648 0.97990 0.92649 1.19131 0.96375 0.92512 1.12897 0.91992 0.88212 0.88223 0.73171 0.71486 0.83632 0.81337 0.83582 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.90 13.22 55.49 0.73 -24.16 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.54 -14.32 9.50 30.94 0.29 -14.03 16 8 H 0.08 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.05 -1.23 20.57 -107.50 -2.21 -3.44 16 10 C -0.15 -2.50 6.16 36.00 0.22 -2.28 16 11 C 0.54 8.37 7.96 -10.99 -0.09 8.28 16 12 O -0.51 -9.77 15.70 5.55 0.09 -9.68 16 13 N -0.53 -5.98 6.22 31.22 0.19 -5.78 16 14 N -0.50 -5.24 6.36 32.66 0.21 -5.03 16 15 C 0.31 3.13 6.77 -83.43 -0.56 2.57 16 16 C -0.28 -2.79 9.27 -39.20 -0.36 -3.15 16 17 C 0.28 3.27 7.25 -17.48 -0.13 3.14 16 18 Cl -0.02 -0.20 29.07 -51.86 -1.51 -1.70 16 19 N -0.51 -6.90 10.38 -9.84 -0.10 -7.00 16 20 C 0.37 4.66 7.62 -157.82 -1.20 3.46 16 21 N -0.47 -5.54 10.43 -12.66 -0.13 -5.67 16 22 C 0.17 1.31 11.14 -17.50 -0.19 1.11 16 23 C -0.19 -1.22 10.04 -39.77 -0.40 -1.62 16 24 C -0.03 -0.22 9.61 -39.32 -0.38 -0.60 16 25 C -0.20 -2.10 5.75 -106.62 -0.61 -2.71 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 28 H 0.10 1.53 8.14 -51.91 -0.42 1.10 16 29 H 0.43 3.55 6.68 -182.61 -1.22 2.33 16 30 H 0.44 4.48 6.25 -182.61 -1.14 3.34 16 31 H 0.15 1.11 6.30 -52.49 -0.33 0.78 16 32 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.83 6.59 -52.49 -0.35 0.49 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -34.48 333.72 -10.51 -44.98 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.27 Total: 1.02 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.51 Total: -3.91 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.90 Total: -47.65 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.21 Total: -3.44 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.48 -10.51 -44.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177422056.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.972 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds